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 Bayesian Inference


Efficient Bayesian network structure learning via local Markov boundary search

arXiv.org Machine Learning

We analyze the complexity of learning directed acyclic graphical models from observational data in general settings without specific distributional assumptions. Our approach is information-theoretic and uses a local Markov boundary search procedure in order to recursively construct ancestral sets in the underlying graphical model. Perhaps surprisingly, we show that for certain graph ensembles, a simple forward greedy search algorithm (i.e. without a backward pruning phase) suffices to learn the Markov boundary of each node. This substantially improves the sample complexity, which we show is at most polynomial in the number of nodes. This is then applied to learn the entire graph under a novel identifiability condition that generalizes existing conditions from the literature. As a matter of independent interest, we establish finite-sample guarantees for the problem of recovering Markov boundaries from data. Moreover, we apply our results to the special case of polytrees, for which the assumptions simplify, and provide explicit conditions under which polytrees are identifiable and learnable in polynomial time. We further illustrate the performance of the algorithm, which is easy to implement, in a simulation study. Our approach is general, works for discrete or continuous distributions without distributional assumptions, and as such sheds light on the minimal assumptions required to efficiently learn the structure of directed graphical models from data.


Information Theoretic Structured Generative Modeling

arXiv.org Machine Learning

R\'enyi's information provides a theoretical foundation for tractable and data-efficient non-parametric density estimation, based on pair-wise evaluations in a reproducing kernel Hilbert space (RKHS). This paper extends this framework to parametric probabilistic modeling, motivated by the fact that R\'enyi's information can be estimated in closed-form for Gaussian mixtures. Based on this special connection, a novel generative model framework called the structured generative model (SGM) is proposed that makes straightforward optimization possible, because costs are scale-invariant, avoiding high gradient variance while imposing less restrictions on absolute continuity, which is a huge advantage in parametric information theoretic optimization. The implementation employs a single neural network driven by an orthonormal input appended to a single white noise source adapted to learn an infinite Gaussian mixture model (IMoG), which provides an empirically tractable model distribution in low dimensions. To train SGM, we provide three novel variational cost functions, based on R\'enyi's second-order entropy and divergence, to implement minimization of cross-entropy, minimization of variational representations of $f$-divergence, and maximization of the evidence lower bound (conditional probability). We test the framework for estimation of mutual information and compare the results with the mutual information neural estimation (MINE), for density estimation, for conditional probability estimation in Markov models as well as for training adversarial networks. Our preliminary results show that SGM significantly improves MINE estimation in terms of data efficiency and variance, conventional and variational Gaussian mixture models, as well as the performance of generative adversarial networks.


Review of Kernel Learning for Intra-Hour Solar Forecasting with Infrared Sky Images and Cloud Dynamic Feature Extraction

arXiv.org Artificial Intelligence

The uncertainty of the energy generated by photovoltaic systems incurs an additional cost for a guaranteed, reliable supply of energy (i.e., energy storage). This investigation aims to decrease the additional cost by introducing probabilistic multi-task intra-hour solar forecasting (feasible in real time applications) to increase the penetration of photovoltaic systems in power grids. The direction of moving clouds is estimated in consecutive sequences of sky images by extracting features of cloud dynamics with the objective of forecasting the global solar irradiance that reaches photovoltaic systems. The sky images are acquired using a low-cost infrared sky imager mounted on a solar tracker. The solar forecasting algorithm is based on kernel learning methods, and uses the clear sky index as predictor and features extracted from clouds as feature vectors. The proposed solar forecasting algorithm achieved 16.45\% forecasting skill 8 minutes ahead with a resolution of 15 seconds. In contrast, previous work reached 15.4\% forecasting skill with the resolution of 1 minute. Therefore, this solar forecasting algorithm increases the performances with respect to the state-of-the-art, providing grid operators with the capability of managing the inherent uncertainties of power grids with a high penetration of photovoltaic systems.


Partial Counterfactual Identification from Observational and Experimental Data

arXiv.org Artificial Intelligence

This paper investigates the problem of bounding counterfactual queries from an arbitrary collection of observational and experimental distributions and qualitative knowledge about the underlying data-generating model represented in the form of a causal diagram. We show that all counterfactual distributions in an arbitrary structural causal model (SCM) could be generated by a canonical family of SCMs with the same causal diagram where unobserved (exogenous) variables are discrete with a finite domain. Utilizing the canonical SCMs, we translate the problem of bounding counterfactuals into that of polynomial programming whose solution provides optimal bounds for the counterfactual query. Solving such polynomial programs is in general computationally expensive. We therefore develop effective Monte Carlo algorithms to approximate the optimal bounds from an arbitrary combination of observational and experimental data. Our algorithms are validated extensively on synthetic and real-world datasets.


Bayesian Regularization for Functional Graphical Models

arXiv.org Machine Learning

Graphical models, used to express conditional dependence between random variables observed at various nodes, are used extensively in many fields such as genetics, neuroscience, and social network analysis. While most current statistical methods for estimating graphical models focus on scalar data, there is interest in estimating analogous dependence structures when the data observed at each node are functional, such as signals or images. In this paper, we propose a fully Bayesian regularization scheme for estimating functional graphical models. We first consider a direct Bayesian analog of the functional graphical lasso proposed by Qiao et al. (2019). We then propose a regularization strategy via the graphical horseshoe. We compare these approaches via simulation study and apply our proposed functional graphical horseshoe to two motivating applications, electroencephalography data for comparing brain activation between an alcoholic group and controls, as well as changes in structural connectivity in the presence of traumatic brain injury (TBI). Our results yield insight into how the brain attempts to compensate for disconnected networks after injury.


Estimating IRI based on pavement distress type, density, and severity: Insights from machine learning techniques

arXiv.org Machine Learning

Surface roughness is primary measure of pavement performance that has been associated with ride quality and vehicle operating costs. Of all the surface roughness indicators, the International Roughness Index (IRI) is the most widely used. However, it is costly to measure IRI, and for this reason, certain road classes are excluded from IRI measurements at a network level. Higher levels of distresses are generally associated with higher roughness. However, for a given roughness level, pavement data typically exhibits a great deal of variability in the distress types, density, and severity. It is hypothesized that it is feasible to estimate the IRI of a pavement section given its distress types and their respective densities and severities. To investigate this hypothesis, this paper uses data from in-service pavements and machine learning methods to ascertain the extent to which IRI can be predicted given a set of pavement attributes. The results suggest that machine learning can be used reliably to estimate IRI based on the measured distress types and their respective densities and severities. The analysis also showed that IRI estimated this way depends on the pavement type and functional class. The paper also includes an exploratory section that addresses the reverse situation, that is, estimating the probability of pavement distress type distribution and occurrence severity/extent based on a given roughness level.


Structure learning in polynomial time: Greedy algorithms, Bregman information, and exponential families

arXiv.org Machine Learning

Greedy algorithms have long been a workhorse for learning graphical models, and more broadly for learning statistical models with sparse structure. In the context of learning directed acyclic graphs, greedy algorithms are popular despite their worst-case exponential runtime. In practice, however, they are very efficient. We provide new insight into this phenomenon by studying a general greedy score-based algorithm for learning DAGs. Unlike edge-greedy algorithms such as the popular GES and hill-climbing algorithms, our approach is vertex-greedy and requires at most a polynomial number of score evaluations. We then show how recent polynomial-time algorithms for learning DAG models are a special case of this algorithm, thereby illustrating how these order-based algorithms can be rigourously interpreted as score-based algorithms. This observation suggests new score functions and optimality conditions based on the duality between Bregman divergences and exponential families, which we explore in detail. Explicit sample and computational complexity bounds are derived. Finally, we provide extensive experiments suggesting that this algorithm indeed optimizes the score in a variety of settings.


Fitting large mixture models using stochastic component selection

arXiv.org Machine Learning

Traditional methods for unsupervised learning of finite mixture models require to evaluate the likelihood of all components of the mixture. This becomes computationally prohibitive when the number of components is large, as it is, for example, in the sum-product (transform) networks. Therefore, we propose to apply a combination of the expectation maximization and the Metropolis-Hastings algorithm to evaluate only a small number of, stochastically sampled, components, thus substantially reducing the computational cost. The Markov chain of component assignments is sequentially generated across the algorithm's iterations, having a non-stationary target distribution whose parameters vary via a gradient-descent scheme. We put emphasis on generality of our method, equipping it with the ability to train both shallow and deep mixture models which involve complex, and possibly nonlinear, transformations. The performance of our method is illustrated in a variety of synthetic and real-data contexts, considering deep models, such as mixtures of normalizing flows and sum-product (transform) networks.


Procedure Planning in Instructional Videos via Contextual Modeling and Model-based Policy Learning

arXiv.org Artificial Intelligence

Learning new skills by observing humans' behaviors is an essential capability of AI. In this work, we leverage instructional videos to study humans' decision-making processes, focusing on learning a model to plan goal-directed actions in real-life videos. In contrast to conventional action recognition, goal-directed actions are based on expectations of their outcomes requiring causal knowledge of potential consequences of actions. Thus, integrating the environment structure with goals is critical for solving this task. Previous works learn a single world model will fail to distinguish various tasks, resulting in an ambiguous latent space; planning through it will gradually neglect the desired outcomes since the global information of the future goal degrades quickly as the procedure evolves. We address these limitations with a new formulation of procedure planning and propose novel algorithms to model human behaviors through Bayesian Inference and model-based Imitation Learning. Experiments conducted on real-world instructional videos show that our method can achieve state-of-the-art performance in reaching the indicated goals. Furthermore, the learned contextual information presents interesting features for planning in a latent space.


Is MC Dropout Bayesian?

arXiv.org Machine Learning

MC Dropout is a mainstream "free lunch" method in medical imaging for approximate Bayesian computations (ABC). Its appeal is to solve out-of-the-box the daunting task of ABC and uncertainty quantification in Neural Networks (NNs); to fall within the variational inference (VI) framework; and to propose a highly multimodal, faithful predictive posterior. We question the properties of MC Dropout for approximate inference, as in fact MC Dropout changes the Bayesian model; its predictive posterior assigns $0$ probability to the true model on closed-form benchmarks; the multimodality of its predictive posterior is not a property of the true predictive posterior but a design artefact. To address the need for VI on arbitrary models, we share a generic VI engine within the pytorch framework. The code includes a carefully designed implementation of structured (diagonal plus low-rank) multivariate normal variational families, and mixtures thereof. It is intended as a go-to no-free-lunch approach, addressing shortcomings of mean-field VI with an adjustable trade-off between expressivity and computational complexity.