Bayesian Inference
Insights from workshop on Bayesian deep learning at neurips 21 - DataScienceCentral.com
Until now, neural networks have been predominantly relying on backpropagation and gradient descent as the inference engine in order to learn a neural network's parameters. This is primarily because closed-form Bayesian inference for neural networks has been considered to be intractable. This short paper outlines a new analytical method for performing tractable approximate Gaussian inference (TAGI) in Bayesian neural networks.
Exoplanet Characterization using Conditional Invertible Neural Networks
Haldemann, Jonas, Ksoll, Victor, Walter, Daniel, Alibert, Yann, Klessen, Ralf S., Benz, Willy, Koethe, Ullrich, Ardizzone, Lynton, Rother, Carsten
The characterization of an exoplanet's interior is an inverse problem, which requires statistical methods such as Bayesian inference in order to be solved. Current methods employ Markov Chain Monte Carlo (MCMC) sampling to infer the posterior probability of planetary structure parameters for a given exoplanet. These methods are time consuming since they require the calculation of a large number of planetary structure models. To speed up the inference process when characterizing an exoplanet, we propose to use conditional invertible neural networks (cINNs) to calculate the posterior probability of the internal structure parameters. cINNs are a special type of neural network which excel in solving inverse problems. We constructed a cINN using FrEIA, which was then trained on a database of $5.6\cdot 10^6$ internal structure models to recover the inverse mapping between internal structure parameters and observable features (i.e., planetary mass, planetary radius and composition of the host star). The cINN method was compared to a Metropolis-Hastings MCMC. For that we repeated the characterization of the exoplanet K2-111 b, using both the MCMC method and the trained cINN. We show that the inferred posterior probability of the internal structure parameters from both methods are very similar, with the biggest differences seen in the exoplanet's water content. Thus cINNs are a possible alternative to the standard time-consuming sampling methods. Indeed, using cINNs allows for orders of magnitude faster inference of an exoplanet's composition than what is possible using an MCMC method, however, it still requires the computation of a large database of internal structures to train the cINN. Since this database is only computed once, we found that using a cINN is more efficient than an MCMC, when more than 10 exoplanets are characterized using the same cINN.
Unified Perspective on Probability Divergence via Maximum Likelihood Density Ratio Estimation: Bridging KL-Divergence and Integral Probability Metrics
Kato, Masahiro, Imaizumi, Masaaki, Minami, Kentaro
This paper provides a unified perspective for the Kullback-Leibler (KL)-divergence and the integral probability metrics (IPMs) from the perspective of maximum likelihood density-ratio estimation (DRE). Both the KL-divergence and the IPMs are widely used in various fields in applications such as generative modeling. However, a unified understanding of these concepts has still been unexplored. In this paper, we show that the KL-divergence and the IPMs can be represented as maximal likelihoods differing only by sampling schemes, and use this result to derive a unified form of the IPMs and a relaxed estimation method. To develop the estimation problem, we construct an unconstrained maximum likelihood estimator to perform DRE with a stratified sampling scheme. We further propose a novel class of probability divergences, called the Density Ratio Metrics (DRMs), that interpolates the KL-divergence and the IPMs. In addition to these findings, we also introduce some applications of the DRMs, such as DRE and generative adversarial networks. In experiments, we validate the effectiveness of our proposed methods.
Probability and Statistics for Business and Data Science
Probability for improved business decisions: Introduction, Combinatorics, Bayesian Inference, Distributions. Welcome to Probability and Statistics for Business and Data Science! In this course we cover what you need to know about probability and statistics to succeed in business and the data science field! This practical course will go over theory and implementation of statistics to real world problems. Each section has example problems, in course quizzes, and assessment tests.
Approximate Bayesian Computation Based on Maxima Weighted Isolation Kernel Mapping
This paper addresses the problem of precisely estimating the parameters of a stochastic model corresponding to branching processes. A branching process is a stochastic process consisting of collections of random variables indexed by the natural numbers. Branching processes are often used to describe population models Jagers (1989) and Athreya and Ney (2012); for example, models in the population genetics showing the genetic drift Burden and Simon (2016) Chen et al. (2017). In contrast to statistical approaches, branching processes enable the study of the dynamics of cell evolution and, as a consistence, have become a popular approach to cancer cell evolution research West et al., 2016. However, particularly in the case of cancer cell evolution, as well as in branching processes in general, the ultimate extinction of a population often occurs Devroye (1998). It is for this reason that with the initial uniform distribution of parameters, branching processes models tend to yield unevenly distributed data consisting of sparse and dense regions. The stochastic nature of the data is an another obstacle in estimating the parameters of a branching processes model, especially in the case of cancer cell evolution Nagornov et al. (2021). Moreover, simulations, based on a model of cell mutations, population evolution, and tumor/cancer subpopulations, commonly lead to the emergence of many clones and rarely to the appearance of cancer cells.
Generative Adversarial Networks (GANs) & Bayesian Networks - DataScienceCentral.com
Generative Adversarial Networks (GANs) software is software for producing forgeries and imitations of data (aka synthetic data, fake data). Human beings have been making fakes, with good or evil intent, of almost everything they possibly can, since the beginning of the human race. Thus, perhaps not too surprisingly, GAN software has been widely used since it was first proposed in this amazingly recent 2014 paper. To gauge how widely GAN software has been used so far, see, for example, this 2019 article entitled "18 Impressive Applications of Generative Adversarial Networks (GANs)" Sounds (voices, music,…), Images (realistic pictures, paintings, drawings, handwriting, …), Text,etc. The forgeries can be tweaked so that they range from being very similar to the originals, to being whimsical exaggerations thereof.
Stochastic Neural Networks with Infinite Width are Deterministic
Ziyin, Liu, Zhang, Hanlin, Meng, Xiangming, Lu, Yuting, Xing, Eric, Ueda, Masahito
Applications of neural networks have achieved great success in various fields. A major extension of the standard neural networks is to make them stochastic, namely, to make the output a random function of the input. In a broad sense, stochastic neural networks include neural networks trained with dropout (Srivastava et al., 2014; Gal & Ghahramani, 2016), Bayesian networks (Mackay, 1992), variational autoencoders (VAE) (Kingma & Welling, 2013), and generative adversarial networks (Goodfellow et al., 2014). There are many reasons why one wants to make a neural network stochastic. Two main reasons are (1) regularization and (2) distribution modeling.
Why the Rich Get Richer? On the Balancedness of Random Partition Models
Lee, Changwoo J., Sang, Huiyan
Random partition models are widely used in Bayesian methods for various clustering tasks, such as mixture models, topic models, and community detection problems. While the number of clusters induced by random partition models has been studied extensively, another important model property regarding the balancedness of cluster sizes has been largely neglected. We formulate a framework to define and theoretically study the balancedness of exchangeable random partition models, by analyzing how a model assigns probabilities to partitions with different levels of balancedness. We demonstrate that the "rich-get-richer" characteristic of many existing popular random partition models is an inevitable consequence of two common assumptions: product-form exchangeability and projectivity. We propose a principled way to compare the balancedness of random partition models, which gives a better understanding of what model works better and what doesn't for different applications. We also introduce the "rich-get-poorer" random partition models and illustrate their application to entity resolution tasks.
Approximate Bayesian Computation with Domain Expert in the Loop
Bharti, Ayush, Filstroff, Louis, Kaski, Samuel
Approximate Bayesian computation (ABC) is a popular likelihood-free inference method for models with intractable likelihood functions. As ABC methods usually rely on comparing summary statistics of observed and simulated data, the choice of the statistics is crucial. This choice involves a trade-off between loss of information and dimensionality reduction, and is often determined based on domain knowledge. However, handcrafting and selecting suitable statistics is a laborious task involving multiple trial-and-error steps. In this work, we introduce an active learning method for ABC statistics selection which reduces the domain expert's work considerably. By involving the experts, we are able to handle misspecified models, unlike the existing dimension reduction methods. Moreover, empirical results show better posterior estimates than with existing methods, when the simulation budget is limited.
Learning Summary Statistics for Bayesian Inference with Autoencoders
Albert, Carlo, Ulzega, Simone, Ozdemir, Firat, Perez-Cruz, Fernando, Mira, Antonietta
For stochastic models with intractable likelihood functions, approximate Bayesian computation offers a way of approximating the true posterior through repeated comparisons of observations with simulated model outputs in terms of a small set of summary statistics. These statistics need to retain the information that is relevant for constraining the parameters but cancel out the noise. They can thus be seen as thermodynamic state variables, for general stochastic models. For many scientific applications, we need strictly more summary statistics than model parameters to reach a satisfactory approximation of the posterior. Therefore, we propose to use the inner dimension of deep neural network based Autoencoders as summary statistics. To create an incentive for the encoder to encode all the parameter-related information but not the noise, we give the decoder access to explicit or implicit information on the noise that has been used to generate the training data. We validate the approach empirically on two types of stochastic models.