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 Bayesian Inference


Plug-and-Play split Gibbs sampler: embedding deep generative priors in Bayesian inference

arXiv.org Artificial Intelligence

This paper introduces a stochastic plug-and-play (PnP) sampling algorithm that leverages variable splitting to efficiently sample from a posterior distribution. The algorithm based on split Gibbs sampling (SGS) draws inspiration from the alternating direction method of multipliers (ADMM). It divides the challenging task of posterior sampling into two simpler sampling problems. The first problem depends on the likelihood function, while the second is interpreted as a Bayesian denoising problem that can be readily carried out by a deep generative model. Specifically, for an illustrative purpose, the proposed method is implemented in this paper using state-of-the-art diffusion-based generative models. Akin to its deterministic PnP-based counterparts, the proposed method exhibits the great advantage of not requiring an explicit choice of the prior distribution, which is rather encoded into a pre-trained generative model. However, unlike optimization methods (e.g., PnP-ADMM) which generally provide only point estimates, the proposed approach allows conventional Bayesian estimators to be accompanied by confidence intervals at a reasonable additional computational cost. Experiments on commonly studied image processing problems illustrate the efficiency of the proposed sampling strategy. Its performance is compared to recent state-of-the-art optimization and sampling methods.


Machine Learning and the Future of Bayesian Computation

arXiv.org Artificial Intelligence

Bayesian models are a powerful tool for studying complex data, allowing the analyst to encode rich hierarchical dependencies and leverage prior information. Most importantly, they facilitate a complete characterization of uncertainty through the posterior distribution. Practical posterior computation is commonly performed via MCMC, which can be computationally infeasible for high dimensional models with many observations. In this article we discuss the potential to improve posterior computation using ideas from machine learning. Concrete future directions are explored in vignettes on normalizing flows, Bayesian coresets, distributed Bayesian inference, and variational inference.


Individual Fairness in Bayesian Neural Networks

arXiv.org Artificial Intelligence

We study Individual Fairness (IF) for Bayesian neural networks (BNNs). Specifically, we consider the $\epsilon$-$\delta$-individual fairness notion, which requires that, for any pair of input points that are $\epsilon$-similar according to a given similarity metrics, the output of the BNN is within a given tolerance $\delta>0.$ We leverage bounds on statistical sampling over the input space and the relationship between adversarial robustness and individual fairness to derive a framework for the systematic estimation of $\epsilon$-$\delta$-IF, designing Fair-FGSM and Fair-PGD as global,fairness-aware extensions to gradient-based attacks for BNNs. We empirically study IF of a variety of approximately inferred BNNs with different architectures on fairness benchmarks, and compare against deterministic models learnt using frequentist techniques. Interestingly, we find that BNNs trained by means of approximate Bayesian inference consistently tend to be markedly more individually fair than their deterministic counterparts.


Unsupervised representation learning with recognition-parametrised probabilistic models

arXiv.org Artificial Intelligence

We introduce a new approach to probabilistic unsupervised learning based on the recognition-parametrised model (RPM): a normalised semi-parametric hypothesis class for joint distributions over observed and latent variables. Under the key assumption that observations are conditionally independent given latents, the RPM combines parametric prior and observation-conditioned latent distributions with non-parametric observation marginals. This approach leads to a flexible learnt recognition model capturing latent dependence between observations, without the need for an explicit, parametric generative model. The RPM admits exact maximum-likelihood learning for discrete latents, even for powerful neural-network-based recognition. We develop effective approximations applicable in the continuous-latent case. Experiments demonstrate the effectiveness of the RPM on high-dimensional data, learning image classification from weak indirect supervision; direct image-level latent Dirichlet allocation; and recognition-parametrised Gaussian process factor analysis (RP-GPFA) applied to multi-factorial spatiotemporal datasets. The RPM provides a powerful framework to discover meaningful latent structure underlying observational data, a function critical to both animal and artificial intelligence.


Bayesian Free Energy of Deep ReLU Neural Network in Overparametrized Cases

arXiv.org Artificial Intelligence

In many research fields in artificial intelligence, it has been shown that deep neural networks are useful to estimate unknown functions on high dimensional input spaces. However, their generalization performance is not yet completely clarified from the theoretical point of view because they are nonidentifiable and singular learning machines. Moreover, a ReLU function is not differentiable, to which algebraic or analytic methods in singular learning theory cannot be applied. In this paper, we study a deep ReLU neural network in overparametrized cases and prove that the Bayesian free energy, which is equal to the minus log marginal likelihoodor the Bayesian stochastic complexity, is bounded even if the number of layers are larger than necessary to estimate an unknown data-generating function. Since the Bayesian generalization error is equal to the increase of the free energy as a function of a sample size, our result also shows that the Bayesian generalization error does not increase even if a deep ReLU neural network is designed to be sufficiently large or in an opeverparametrized state.


Physics-informed Information Field Theory for Modeling Physical Systems with Uncertainty Quantification

arXiv.org Artificial Intelligence

Data-driven approaches coupled with physical knowledge are powerful techniques to model systems. The goal of such models is to efficiently solve for the underlying field by combining measurements with known physical laws. As many systems contain unknown elements, such as missing parameters, noisy data, or incomplete physical laws, this is widely approached as an uncertainty quantification problem. The common techniques to handle all the variables typically depend on the numerical scheme used to approximate the posterior, and it is desirable to have a method which is independent of any such discretization. Information field theory (IFT) provides the tools necessary to perform statistics over fields that are not necessarily Gaussian. We extend IFT to physics-informed IFT (PIFT) by encoding the functional priors with information about the physical laws which describe the field. The posteriors derived from this PIFT remain independent of any numerical scheme and can capture multiple modes, allowing for the solution of problems which are ill-posed. We demonstrate our approach through an analytical example involving the Klein-Gordon equation. We then develop a variant of stochastic gradient Langevin dynamics to draw samples from the joint posterior over the field and model parameters. We apply our method to numerical examples with various degrees of model-form error and to inverse problems involving nonlinear differential equations. As an addendum, the method is equipped with a metric which allows the posterior to automatically quantify model-form uncertainty. Because of this, our numerical experiments show that the method remains robust to even an incorrect representation of the physics given sufficient data. We numerically demonstrate that the method correctly identifies when the physics cannot be trusted, in which case it automatically treats learning the field as a regression problem.


Persistently Trained, Diffusion-assisted Energy-based Models

arXiv.org Artificial Intelligence

Maximum likelihood (ML) learning for energy-based models (EBMs) is challenging, partly due to non-convergence of Markov chain Monte Carlo.Several variations of ML learning have been proposed, but existing methods all fail to achieve both post-training image generation and proper density estimation. We propose to introduce diffusion data and learn a joint EBM, called diffusion assisted-EBMs, through persistent training (i.e., using persistent contrastive divergence) with an enhanced sampling algorithm to properly sample from complex, multimodal distributions. We present results from a 2D illustrative experiment and image experiments and demonstrate that, for the first time for image data, persistently trained EBMs can {\it simultaneously} achieve long-run stability, post-training image generation, and superior out-of-distribution detection.


Model Based Reinforcement Learning for Personalized Heparin Dosing

arXiv.org Artificial Intelligence

A key challenge in sequential decision making is optimizing systems safely under partial information. While much of the literature has focused on the cases of either partially known states or partially known dynamics, it is further exacerbated in cases where both states and dynamics are partially known. Computing heparin doses for patients fits this paradigm since the concentration of heparin in the patient cannot be measured directly and the rates at which patients metabolize heparin vary greatly between individuals. While many proposed solutions are model free, they require complex models and have difficulty ensuring safety. However, if some of the structure of the dynamics is known, a model based approach can be leveraged to provide safe policies. In this paper we propose such a framework to address the challenge of optimizing personalized heparin doses. We use a predictive model parameterized individually by patient to predict future therapeutic effects. We then leverage this model using a scenario generation based approach that is capable of ensuring patient safety. We validate our models with numerical experiments by comparing the predictive capabilities of our model against existing machine learning techniques and demonstrating how our dosing algorithm can treat patients in a simulated ICU environment.


Bayesian optimization for sparse neural networks with trainable activation functions

arXiv.org Artificial Intelligence

In the literature on deep neural networks, there is considerable interest in developing activation functions that can enhance neural network performance. In recent years, there has been renewed scientific interest in proposing activation functions that can be trained throughout the learning process, as they appear to improve network performance, especially by reducing overfitting. In this paper, we propose a trainable activation function whose parameters need to be estimated. A fully Bayesian model is developed to automatically estimate from the learning data both the model weights and activation function parameters. An MCMC-based optimization scheme is developed to build the inference. The proposed method aims to solve the aforementioned problems and improve convergence time by using an efficient sampling scheme that guarantees convergence to the global maximum. The proposed scheme is tested on three datasets with three different CNNs. Promising results demonstrate the usefulness of our proposed approach in improving model accuracy due to the proposed activation function and Bayesian estimation of the parameters.


Implicit representation priors meet Riemannian geometry for Bayesian robotic grasping

arXiv.org Artificial Intelligence

Robotic grasping in highly noisy environments presents complex challenges, especially with limited prior knowledge about the scene. In particular, identifying good grasping poses with Bayesian inference becomes difficult due to two reasons: i) generating data from uninformative priors proves to be inefficient, and ii) the posterior often entails a complex distribution defined on a Riemannian manifold. In this study, we explore the use of implicit representations to construct scene-dependent priors, thereby enabling the application of efficient simulation-based Bayesian inference algorithms for determining successful grasp poses in unstructured environments. Results from both simulation and physical benchmarks showcase the high success rate and promising potential of this approach.