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 Bayesian Inference


Locking and Quacking: Stacking Bayesian model predictions by log-pooling and superposition

arXiv.org Artificial Intelligence

Combining predictions from different models is a central problem in Bayesian inference and machine learning more broadly. Currently, these predictive distributions are almost exclusively combined using linear mixtures such as Bayesian model averaging, Bayesian stacking, and mixture of experts. Such linear mixtures impose idiosyncrasies that might be undesirable for some applications, such as multi-modality. While there exist alternative strategies (e.g. geometric bridge or superposition), optimising their parameters usually involves computing an intractable normalising constant repeatedly. We present two novel Bayesian model combination tools. These are generalisations of model stacking, but combine posterior densities by log-linear pooling (locking) and quantum superposition (quacking). To optimise model weights while avoiding the burden of normalising constants, we investigate the Hyvarinen score of the combined posterior predictions. We demonstrate locking with an illustrative example and discuss its practical application with importance sampling.


Towards Convergence Rates for Parameter Estimation in Gaussian-gated Mixture of Experts

arXiv.org Artificial Intelligence

Originally introduced as a neural network for ensemble learning, mixture of experts (MoE) has recently become a fundamental building block of highly successful modern deep neural networks for heterogeneous data analysis in several applications, including those in machine learning, statistics, bioinformatics, economics, and medicine. Despite its popularity in practice, a satisfactory level of understanding of the convergence behavior of Gaussian-gated MoE parameter estimation is far from complete. The underlying reason for this challenge is the inclusion of covariates in the Gaussian gating and expert networks, which leads to their intrinsically complex interactions via partial differential equations with respect to their parameters. We address these issues by designing novel Voronoi loss functions to accurately capture heterogeneity in the maximum likelihood estimator (MLE) for resolving parameter estimation in these models. Our results reveal distinct behaviors of the MLE under two settings: the first setting is when all the location parameters in the Gaussian gating are non-zeros while the second setting is when there exists at least one zero-valued location parameter. Notably, these behaviors can be characterized by the solvability of two different systems of polynomial equations. Finally, we conduct a simulation study to verify our theoretical results.


Sparse Bayesian Lasso via a Variable-Coefficient $\ell_1$ Penalty

arXiv.org Machine Learning

Modern statistical learning algorithms are capable of amazing flexibility, but struggle with interpretability. One possible solution is sparsity: making inference such that many of the parameters are estimated as being identically 0, which may be imposed through the use of nonsmooth penalties such as the $\ell_1$ penalty. However, the $\ell_1$ penalty introduces significant bias when high sparsity is desired. In this article, we retain the $\ell_1$ penalty, but define learnable penalty weights $\lambda_p$ endowed with hyperpriors. We start the article by investigating the optimization problem this poses, developing a proximal operator associated with the $\ell_1$ norm. We then study the theoretical properties of this variable-coefficient $\ell_1$ penalty in the context of penalized likelihood. Next, we investigate application of this penalty to Variational Bayes, developing a model we call the Sparse Bayesian Lasso which allows for behavior qualitatively like Lasso regression to be applied to arbitrary variational models. In simulation studies, this gives us the Uncertainty Quantification and low bias properties of simulation-based approaches with an order of magnitude less computation. Finally, we apply our methodology to a Bayesian lagged spatiotemporal regression model of internal displacement that occurred during the Iraqi Civil War of 2013-2017.


Using a Bayesian-Inference Approach to Calibrating Models for Simulation in Robotics

arXiv.org Artificial Intelligence

In robotics, simulation has the potential to reduce design time and costs, and lead to a more robust engineered solution and a safer development process. However, the use of simulators is predicated on the availability of good models. This contribution is concerned with improving the quality of these models via calibration, which is cast herein in a Bayesian framework. First, we discuss the Bayesian machinery involved in model calibration. Then, we demonstrate it in one example: calibration of a vehicle dynamics model that has low degree of freedom count and can be used for state estimation, model predictive control, or path planning. A high fidelity simulator is used to emulate the ``experiments'' and generate the data for the calibration. The merit of this work is not tied to a new Bayesian methodology for calibration, but to the demonstration of how the Bayesian machinery can establish connections among models in computational dynamics, even when the data in use is noisy. The software used to generate the results reported herein is available in a public repository for unfettered use and distribution.


Sequential Experimental Design for Spectral Measurement: Active Learning Using a Parametric Model

arXiv.org Artificial Intelligence

In this study, we demonstrate a sequential experimental design for spectral measurements by active learning using parametric models as predictors. In spectral measurements, it is necessary to reduce the measurement time because of sample fragility and high energy costs. To improve the efficiency of experiments, sequential experimental designs are proposed, in which the subsequent measurement is designed by active learning using the data obtained before the measurement. Conventionally, parametric models are employed in data analysis; when employed for active learning, they are expected to afford a sequential experimental design that improves the accuracy of data analysis. However, due to the complexity of the formulas, a sequential experimental design using general parametric models has not been realized. Therefore, we applied Bayesian inference-based data analysis using the exchange Monte Carlo method to realize a sequential experimental design with general parametric models. In this study, we evaluated the effectiveness of the proposed method by applying it to Bayesian spectral deconvolution and Bayesian Hamiltonian selection in X-ray photoelectron spectroscopy. Using numerical experiments with artificial data, we demonstrated that the proposed method improves the accuracy of model selection and parameter estimation while reducing the measurement time compared with the results achieved without active learning or with active learning using the Gaussian process regression.


Path-Based Sensors: Will the Knowledge of Correlation in Random Variables Accelerate Information Gathering?

arXiv.org Artificial Intelligence

Effective communication is crucial for deploying robots in mission-specific tasks, but inadequate or unreliable communication can greatly reduce mission efficacy, for example in search and rescue missions where communication-denied conditions may occur. In such missions, robots are deployed to locate targets, such as human survivors, but they might get trapped at hazardous locations, such as in a trapping pit or by debris. Thus, the information the robot collected is lost owing to the lack of communication. In our prior work, we developed the notion of a path-based sensor. A path-based sensor detects whether or not an event has occurred along a particular path, but it does not provide the exact location of the event. Such path-based sensor observations are well-suited to communication-denied environments, and various studies have explored methods to improve information gathering in such settings. In some missions it is typical for target elements to be in close proximity to hazardous factors that hinder the information-gathering process. In this study, we examine a similar scenario and conduct experiments to determine if additional knowledge about the correlation between hazards and targets improves the efficiency of information gathering. To incorporate this knowledge, we utilize a Bayesian network representation of domain knowledge and develop an algorithm based on this representation. Our empirical investigation reveals that such additional information on correlation is beneficial only in environments with moderate hazard lethality, suggesting that while knowledge of correlation helps, further research and development is necessary for optimal outcomes.


Dropout Regularization in Extended Generalized Linear Models based on Double Exponential Families

arXiv.org Artificial Intelligence

Even though dropout is a popular regularization technique, its theoretical properties are not fully understood. In this paper we study dropout regularization in extended generalized linear models based on double exponential families, for which the dispersion parameter can vary with the features. A theoretical analysis shows that dropout regularization prefers rare but important features in both the mean and dispersion, generalizing an earlier result for conventional generalized linear models. Training is performed using stochastic gradient descent with adaptive learning rate. To illustrate, we apply dropout to adaptive smoothing with B-splines, where both the mean and dispersion parameters are modelled flexibly. The important B-spline basis functions can be thought of as rare features, and we confirm in experiments that dropout is an effective form of regularization for mean and dispersion parameters that improves on a penalized maximum likelihood approach with an explicit smoothness penalty.


NUBO: A Transparent Python Package for Bayesian Optimisation

arXiv.org Artificial Intelligence

NUBO, short for Newcastle University Bayesian Optimisation, is a Bayesian optimisation framework for the optimisation of expensive-to-evaluate black-box functions, such as physical experiments and computer simulators. Bayesian optimisation is a cost-efficient optimisation strategy that uses surrogate modelling via Gaussian processes to represent an objective function and acquisition functions to guide the selection of candidate points to approximate the global optimum of the objective function. NUBO itself focuses on transparency and user experience to make Bayesian optimisation easily accessible to researchers from all disciplines. Clean and understandable code, precise references, and thorough documentation ensure transparency, while user experience is ensured by a modular and flexible design, easy-to-write syntax, and careful selection of Bayesian optimisation algorithms. NUBO allows users to tailor Bayesian optimisation to their specific problem by writing the optimisation loop themselves using the provided building blocks. It supports sequential single-point, parallel multi-point, and asynchronous optimisation of bounded, constrained, and/or mixed (discrete and continuous) parameter input spaces. Only algorithms and methods that are extensively tested and validated to perform well are included in NUBO. This ensures that the package remains compact and does not overwhelm the user with an unnecessarily large number of options. The package is written in Python but does not require expert knowledge of Python to optimise your simulators and experiments. NUBO is distributed as open-source software under the BSD 3-Clause licence.


Safe motion planning with environment uncertainty

arXiv.org Artificial Intelligence

We present an approach for safe motion planning under robot state and environment (obstacle and landmark location) uncertainties. To this end, we first develop an approach that accounts for the landmark uncertainties during robot localization. Existing planning approaches assume that the landmark locations are well known or are known with little uncertainty. However, this might not be true in practice. Noisy sensors and imperfect motions compound to the errors originating from the estimate of environment features. Moreover, possible occlusions and dynamic objects in the environment render imperfect landmark estimation. Consequently, not considering this uncertainty can wrongly localize the robot, leading to inefficient plans. Our approach thus incorporates the landmark uncertainty within the Bayes filter estimation framework. We also analyze the effect of considering this uncertainty and delineate the conditions under which it can be ignored. Second, we extend the state-of-the-art by computing an exact expression for the collision probability under Gaussian distributed robot motion, perception and obstacle location uncertainties. We formulate the collision probability process as a quadratic form in random variables. Under Gaussian distribution assumptions, an exact expression for collision probability is thus obtained which is computable in real-time. In contrast, existing approaches approximate the collision probability using upper-bounds that can lead to overly conservative estimate and thereby suboptimal plans. We demonstrate and evaluate our approach using a theoretical example and simulations. We also present a comparison of our approach to different state-of-the-art methods.


Fine-Tuning Language Models via Epistemic Neural Networks

arXiv.org Artificial Intelligence

Language models often pre-train on large unsupervised text corpora, then fine-tune on additional task-specific data. However, typical fine-tuning schemes do not prioritize the examples that they tune on. We show that, if you can prioritize informative training data, you can achieve better performance while using fewer labels. To do this we augment a language model with an epinet: a small additional network that helps to estimate model uncertainty and forms an \textit{epistemic neural network} (ENN). ENNs are neural networks that can know what they don't know. Using an epinet to prioritize uncertain data, we can fine-tune BERT on GLUE tasks to the same performance while using 2x less data than training without prioritization. We also investigate performance in synthetic neural network generative models designed to build understanding. In each setting, using an epinet outperforms heuristic active learning schemes.