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 Bayesian Inference


Minimizing robust density power-based divergences for general parametric density models

arXiv.org Machine Learning

As the presence of outliers within observations may adversely affect the statistical inference, robust statistics has been developed for several decades (Huber and Ronchetti, 1981; Hampel et al., 1986; Maronna et al., 2006). Amongst many possible directions, the divergence-based approach, which estimates some parameters in probabilistic models by minimizing the divergence to underlying distributions, has drawn considerable attention owing to its compatibility with the probabilistically formulated problems. In particular, density power divergence (DPD), also known as β-divergence (Basu et al., 1998), extends the Kullback-Leibler divergence to enhance robustness against outliers. DPD has gained recognition as one of the most widely used divergences across disciplines. DPD finds applications in various fields, including blind source separation (Minami and Eguchi, 2002), matrix factorization (Tan and Févotte, 2012), signal processing (Basseville, 2013), Bayesian inference (Ghosh and Basu, 2016), variational inference (Futami et al., 2018), and more, contributing to the enhancement of robustness in these applications.


Probabilistic Multi-Dimensional Classification

arXiv.org Artificial Intelligence

Multi-dimensional classification (MDC) can be employed in a range of applications where one needs to predict multiple class variables for each given instance. Many existing MDC methods suffer from at least one of inaccuracy, scalability, limited use to certain types of data, hardness of interpretation or lack of probabilistic (uncertainty) estimations. This paper is an attempt to address all these disadvantages simultaneously. We propose a formal framework for probabilistic MDC in which learning an optimal multi-dimensional classifier can be decomposed, without loss of generality, into learning a set of (smaller) single-variable multi-class probabilistic classifiers and a directed acyclic graph. Current and future developments of both probabilistic classification and graphical model learning can directly enhance our framework, which is flexible and provably optimal. A collection of experiments is conducted to highlight the usefulness of this MDC framework.


Learning in Deep Factor Graphs with Gaussian Belief Propagation

arXiv.org Machine Learning

We propose an approach to do learning in Gaussian factor graphs. We treat all relevant quantities (inputs, outputs, parameters, latents) as random variables in a graphical model, and view both training and prediction as inference problems with different observed nodes. Our experiments show that these problems can be efficiently solved with belief propagation (BP), whose updates are inherently local, presenting exciting opportunities for distributed and asynchronous training. Our approach can be scaled to deep networks and provides a natural means to do continual learning: use the BP-estimated parameter marginals of the current task as parameter priors for the next. On a video denoising task we demonstrate the benefit of learnable parameters over a classical factor graph approach and we show encouraging performance of deep factor graphs for continual image classification on MNIST.


ReLU to the Rescue: Improve Your On-Policy Actor-Critic with Positive Advantages

arXiv.org Artificial Intelligence

This paper introduces an effective and practical step toward approximate Bayesian inference in on-policy actor-critic deep reinforcement learning. This step manifests as three simple modifications to the Asynchronous Advantage Actor-Critic (A3C) algorithm: (1) applying a ReLU function to advantage estimates, (2) spectral normalization of actor-critic weights, and (3) incorporating dropout as a Bayesian approximation. We prove under standard assumptions that restricting policy updates to positive advantages optimizes for value by maximizing a lower bound on the value function plus an additive term. We show that the additive term is bounded proportional to the Lipschitz constant of the value function, which offers theoretical grounding for spectral normalization of critic weights. Finally, our application of dropout corresponds to approximate Bayesian inference over both the actor and critic parameters, which enables prudent state-aware exploration around the modes of the actor via Thompson sampling. Extensive empirical evaluations on diverse benchmarks reveal the superior performance of our approach compared to existing on- and off-policy algorithms. We demonstrate significant improvements for median and interquartile mean metrics over PPO, SAC, and TD3 on the MuJoCo continuous control benchmark. Moreover, we see improvement over PPO in the challenging ProcGen generalization benchmark.


A Metalearned Neural Circuit for Nonparametric Bayesian Inference

arXiv.org Machine Learning

Most applications of machine learning to classification assume a closed set of balanced classes. This is at odds with the real world, where class occurrence statistics often follow a long-tailed power-law distribution and it is unlikely that all classes are seen in a single sample. Nonparametric Bayesian models naturally capture this phenomenon, but have significant practical barriers to widespread adoption, namely implementation complexity and computational inefficiency. To address this, we present a method for extracting the inductive bias from a nonparametric Bayesian model and transferring it to an artificial neural network. By simulating data with a nonparametric Bayesian prior, we can metalearn a sequence model that performs inference over an unlimited set of classes. After training, this "neural circuit" has distilled the corresponding inductive bias and can successfully perform sequential inference over an open set of classes. Our experimental results show that the metalearned neural circuit achieves comparable or better performance than particle filter-based methods for inference in these models while being faster and simpler to use than methods that explicitly incorporate Bayesian nonparametric inference.


Thompson sampling for zero-inflated count outcomes with an application to the Drink Less mobile health study

arXiv.org Machine Learning

Mobile health (mHealth) technologies aim to improve distal outcomes, such as clinical conditions, by optimizing proximal outcomes through just-in-time adaptive interventions. Contextual bandits provide a suitable framework for customizing such interventions according to individual time-varying contexts, intending to maximize cumulative proximal outcomes. However, unique challenges such as modeling count outcomes within bandit frameworks have hindered the widespread application of contextual bandits to mHealth studies. The current work addresses this challenge by leveraging count data models into online decision-making approaches. Specifically, we combine four common offline count data models (Poisson, negative binomial, zero-inflated Poisson, and zero-inflated negative binomial regressions) with Thompson sampling, a popular contextual bandit algorithm. The proposed algorithms are motivated by and evaluated on a real dataset from the Drink Less trial, where they are shown to improve user engagement with the mHealth system. The proposed methods are further evaluated on simulated data, achieving improvement in maximizing cumulative proximal outcomes over existing algorithms. Theoretical results on regret bounds are also derived. A user-friendly R package countts that implements the proposed methods for assessing contextual bandit algorithms is made publicly available at https://cran.r-project.org/web/packages/countts.


A Bayesian Take on Gaussian Process Networks

arXiv.org Machine Learning

Gaussian Process Networks (GPNs) are a class of directed graphical models which employ Gaussian processes as priors for the conditional expectation of each variable given its parents in the network. The model allows the description of continuous joint distributions in a compact but flexible manner with minimal parametric assumptions on the dependencies between variables. Bayesian structure learning of GPNs requires computing the posterior over graphs of the network and is computationally infeasible even in low dimensions. This work implements Monte Carlo and Markov Chain Monte Carlo methods to sample from the posterior distribution of network structures. As such, the approach follows the Bayesian paradigm, comparing models via their marginal likelihood and computing the posterior probability of the GPN features. Simulation studies show that our method outperforms state-of-the-art algorithms in recovering the graphical structure of the network and provides an accurate approximation of its posterior distribution.


Towards Reliable Uncertainty Quantification via Deep Ensembles in Multi-output Regression Task

arXiv.org Artificial Intelligence

This study aims to comprehensively investigate the deep ensemble approach, an approximate Bayesian inference, in the multi-output regression task for predicting the aerodynamic performance of a missile configuration. To this end, the effect of the number of neural networks used in the ensemble, which has been blindly adopted in previous studies, is scrutinized. As a result, an obvious trend towards underestimation of uncertainty as it increases is observed for the first time, and in this context, we propose the deep ensemble framework that applies the post-hoc calibration method to improve its uncertainty quantification performance. It is compared with Gaussian process regression and is shown to have superior performance in terms of regression accuracy ($\uparrow55\sim56\%$), reliability of estimated uncertainty ($\uparrow38\sim77\%$), and training efficiency ($\uparrow78\%$). Finally, the potential impact of the suggested framework on the Bayesian optimization is briefly examined, indicating that deep ensemble without calibration may lead to unintended exploratory behavior. This UQ framework can be seamlessly applied and extended to any regression task, as no special assumptions have been made for the specific problem used in this study.


Weight fluctuations in (deep) linear neural networks and a derivation of the inverse-variance flatness relation

arXiv.org Artificial Intelligence

We investigate the stationary (late-time) training regime of single- and two-layer linear neural networks within the continuum limit of stochastic gradient descent (SGD) for synthetic Gaussian data. In the case of a single-layer network in the weakly oversampled regime, the spectrum of the noise covariance matrix deviates notably from the Hessian, which can be attributed to the broken detailed balance of SGD dynamics. The weight fluctuations are in this case generally anisotropic, but experience an isotropic loss. For a two-layer network, we obtain the stochastic dynamics of the weights in each layer and analyze the associated stationary covariances. We identify the inter-layer coupling as a new source of anisotropy for the weight fluctuations. In contrast to the single-layer case, the weight fluctuations experience an anisotropic loss, the flatness of which is inversely related to the fluctuation variance. We thereby provide an analytical derivation of the recently observed inverse variance-flatness relation in a deep linear network model.


Empirical Comparison between Cross-Validation and Mutation-Validation in Model Selection

arXiv.org Machine Learning

Mutation validation (MV) is a recently proposed approach for model selection, garnering significant interest due to its unique characteristics and potential benefits compared to the widely used cross-validation (CV) method. In this study, we empirically compared MV and $k$-fold CV using benchmark and real-world datasets. By employing Bayesian tests, we compared generalization estimates yielding three posterior probabilities: practical equivalence, CV superiority, and MV superiority. We also evaluated the differences in the capacity of the selected models and computational efficiency. We found that both MV and CV select models with practically equivalent generalization performance across various machine learning algorithms and the majority of benchmark datasets. MV exhibited advantages in terms of selecting simpler models and lower computational costs. However, in some cases MV selected overly simplistic models leading to underfitting and showed instability in hyperparameter selection. These limitations of MV became more evident in the evaluation of a real-world neuroscientific task of predicting sex at birth using brain functional connectivity.