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 Bayesian Inference


Whole-examination AI estimation of fetal biometrics from 20-week ultrasound scans

arXiv.org Artificial Intelligence

The current approach to fetal anomaly screening is based on biometric measurements derived from individually selected ultrasound images. In this paper, we introduce a paradigm shift that attains human-level performance in biometric measurement by aggregating automatically extracted biometrics from every frame across an entire scan, with no need for operator intervention. We use a convolutional neural network to classify each frame of an ultrasound video recording. We then measure fetal biometrics in every frame where appropriate anatomy is visible. We use a Bayesian method to estimate the true value of each biometric from a large number of measurements and probabilistically reject outliers. We performed a retrospective experiment on 1457 recordings (comprising 48 million frames) of 20-week ultrasound scans, estimated fetal biometrics in those scans and compared our estimates to the measurements sonographers took during the scan. Our method achieves human-level performance in estimating fetal biometrics and estimates well-calibrated credible intervals in which the true biometric value is expected to lie.


AI Alignment: A Comprehensive Survey

arXiv.org Artificial Intelligence

AI alignment aims to make AI systems behave in line with human intentions and values. As AI systems grow more capable, so do risks from misalignment. To provide a comprehensive and up-to-date overview of the alignment field, in this survey, we delve into the core concepts, methodology, and practice of alignment. First, we identify four principles as the key objectives of AI alignment: Robustness, Interpretability, Controllability, and Ethicality (RICE). Guided by these four principles, we outline the landscape of current alignment research and decompose them into two key components: forward alignment and backward alignment. The former aims to make AI systems aligned via alignment training, while the latter aims to gain evidence about the systems' alignment and govern them appropriately to avoid exacerbating misalignment risks. On forward alignment, we discuss techniques for learning from feedback and learning under distribution shift. On backward alignment, we discuss assurance techniques and governance practices. We also release and continually update the website (www.alignmentsurvey.com) which features tutorials, collections of papers, blog posts, and other resources.


Transfer Learning for Causal Effect Estimation

arXiv.org Machine Learning

We present a Transfer Causal Learning (TCL) framework when target and source domains share the same covariate/feature spaces, aiming to improve causal effect estimation accuracy in limited data. Limited data is very common in medical applications, where some rare medical conditions, such as sepsis, are of interest. Our proposed method, named \texttt{$\ell_1$-TCL}, incorporates $\ell_1$ regularized TL for nuisance models (e.g., propensity score model); the TL estimator of the nuisance parameters is plugged into downstream average causal/treatment effect estimators (e.g., inverse probability weighted estimator). We establish non-asymptotic recovery guarantees for the \texttt{$\ell_1$-TCL} with generalized linear model (GLM) under the sparsity assumption in the high-dimensional setting, and demonstrate the empirical benefits of \texttt{$\ell_1$-TCL} through extensive numerical simulation for GLM and recent neural network nuisance models. Our method is subsequently extended to real data and generates meaningful insights consistent with medical literature, a case where all baseline methods fail.


Decision-Focused Model-based Reinforcement Learning for Reward Transfer

arXiv.org Artificial Intelligence

Decision-focused (DF) model-based reinforcement learning has recently been introduced as a powerful algorithm that can focus on learning the MDP dynamics that are most relevant for obtaining high returns. While this approach increases the agent's performance by directly optimizing the reward, it does so by learning less accurate dynamics from a maximum likelihood perspective. We demonstrate that when the reward function is defined by preferences over multiple objectives, the DF model may be sensitive to changes in the objective preferences.In this work, we develop the robust decision-focused (RDF) algorithm, which leverages the non-identifiability of DF solutions to learn models that maximize expected returns while simultaneously learning models that transfer to changes in the preference over multiple objectives. We demonstrate the effectiveness of RDF on two synthetic domains and two healthcare simulators, showing that it significantly improves the robustness of DF model learning to changes in the reward function without compromising training-time return.


A Compact Representation for Bayesian Neural Networks By Removing Permutation Symmetry

arXiv.org Machine Learning

Bayesian neural networks (BNNs) are a principled approach to modeling predictive uncertainties in deep learning, which are important in safety-critical applications. Since exact Bayesian inference over the weights in a BNN is intractable, various approximate inference methods exist, among which sampling methods such as Hamiltonian Monte Carlo (HMC) are often considered the gold standard. While HMC provides high-quality samples, it lacks interpretable summary statistics because its sample mean and variance is meaningless in neural networks due to permutation symmetry. In this paper, we first show that the role of permutations can be meaningfully quantified by a number of transpositions metric. We then show that the recently proposed rebasin method [1] allows us to summarize HMC samples into a compact representation that provides a meaningful explicit uncertainty estimate for each weight in a neural network, thus unifying sampling methods with variational inference. We show that this compact representation allows us to compare trained BNNs directly in weight space across sampling methods and variational inference, and to efficiently prune neural networks trained without explicit Bayesian frameworks by exploiting uncertainty estimates from HMC.


Conditional Density Estimations from Privacy-Protected Data

arXiv.org Machine Learning

Many modern statistical analysis and machine learning applications require training models on sensitive user data. Differential privacy provides a formal guarantee that individual-level information about users does not leak. In this framework, randomized algorithms inject calibrated noise into the confidential data, resulting in privacy-protected datasets or queries. However, restricting access to only privatized data during statistical analysis makes it computationally challenging to make valid inferences on the parameters underlying the confidential data. In this work, we propose simulation-based inference methods from privacy-protected datasets. In addition to sequential Monte Carlo approximate Bayesian computation, we use neural conditional density estimators as a flexible family of distributions to approximate the posterior distribution of model parameters given the observed private query results. We illustrate our methods on discrete time-series data under an infectious disease model and with ordinary linear regression models. Illustrating the privacy-utility trade-off, our experiments and analysis demonstrate the necessity and feasibility of designing valid statistical inference procedures to correct for biases introduced by the privacy-protection mechanisms.


A Class of Dependent Random Distributions Based on Atom Skipping

arXiv.org Machine Learning

We propose the Plaid Atoms Model (PAM), a novel Bayesian nonparametric model for grouped data. Founded on an idea of `atom skipping', PAM is part of a well-established category of models that generate dependent random distributions and clusters across multiple groups. Atom skipping referrs to stochastically assigning 0 weights to atoms in an infinite mixture. Deploying atom skipping across groups, PAM produces a dependent clustering pattern with overlapping and non-overlapping clusters across groups. As a result, interpretable posterior inference is possible such as reporting the posterior probability of a cluster being exclusive to a single group or shared among a subset of groups. We discuss the theoretical properties of the proposed and related models. Minor extensions of the proposed model for multivariate or count data are presented. Simulation studies and applications using real-world datasets illustrate the performance of the new models with comparison to existing models.


HQ-VAE: Hierarchical Discrete Representation Learning with Variational Bayes

arXiv.org Artificial Intelligence

Vector quantization (VQ) is a technique to deterministically learn features with discrete codebook representations. It is commonly performed with a variational autoencoding model, VQ-VAE, which can be further extended to hierarchical structures for making high-fidelity reconstructions. However, such hierarchical extensions of VQ-VAE often suffer from the codebook/layer collapse issue, where the codebook is not efficiently used to express the data, and hence degrades reconstruction accuracy. To mitigate this problem, we propose a novel unified framework to stochastically learn hierarchical discrete representation on the basis of the variational Bayes framework, called hierarchically quantized variational autoencoder (HQ-VAE). HQ-VAE naturally generalizes the hierarchical variants of VQ-VAE, such as VQ-VAE-2 and residual-quantized VAE (RQ-VAE), and provides them with a Bayesian training scheme. Our comprehensive experiments on image datasets show that HQ-VAE enhances codebook usage and improves reconstruction performance.


DiffHybrid-UQ: Uncertainty Quantification for Differentiable Hybrid Neural Modeling

arXiv.org Artificial Intelligence

The hybrid neural differentiable models mark a significant advancement in the field of scientific machine learning. These models, integrating numerical representations of known physics into deep neural networks, offer enhanced predictive capabilities and show great potential for data-driven modeling of complex physical systems. However, a critical and yet unaddressed challenge lies in the quantification of inherent uncertainties stemming from multiple sources. Addressing this gap, we introduce a novel method, DiffHybrid-UQ, for effective and efficient uncertainty propagation and estimation in hybrid neural differentiable models, leveraging the strengths of deep ensemble Bayesian learning and nonlinear transformations. Specifically, our approach effectively discerns and quantifies both aleatoric uncertainties, arising from data noise, and epistemic uncertainties, resulting from model-form discrepancies and data sparsity. This is achieved within a Bayesian model averaging framework, where aleatoric uncertainties are modeled through hybrid neural models. The unscented transformation plays a pivotal role in enabling the flow of these uncertainties through the nonlinear functions within the hybrid model. In contrast, epistemic uncertainties are estimated using an ensemble of stochastic gradient descent (SGD) trajectories. This approach offers a practical approximation to the posterior distribution of both the network parameters and the physical parameters. Notably, the DiffHybrid-UQ framework is designed for simplicity in implementation and high scalability, making it suitable for parallel computing environments. The merits of the proposed method have been demonstrated through problems governed by both ordinary and partial differentiable equations.


Analysis of Estimating the Bayes Rule for Gaussian Mixture Models with a Specified Missing-Data Mechanism

arXiv.org Machine Learning

Semi-supervised learning (SSL) approaches have been successfully applied in a wide range of engineering and scientific fields. This paper investigates the generative model framework with a missingness mechanism for unclassified observations, as introduced by Ahfock and McLachlan(2020). We show that in a partially classified sample, a classifier using Bayes rule of allocation with a missing-data mechanism can surpass a fully supervised classifier in a two-class normal homoscedastic model, especially with moderate to low overlap and proportion of missing class labels, or with large overlap but few missing labels. It also outperforms a classifier with no missing-data mechanism regardless of the overlap region or the proportion of missing class labels. Our exploration of two- and three-component normal mixture models with unequal covariances through simulations further corroborates our findings. Finally, we illustrate the use of the proposed classifier with a missing-data mechanism on interneuronal and skin lesion datasets.