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 Bayesian Inference


Density Estimation via Measure Transport: Outlook for Applications in the Biological Sciences

arXiv.org Artificial Intelligence

The problem of estimating a probability distribution density from samples (e.g., observations, measurements, or simulation data) is ubiquitous in data science, uncertainty quantification, clustering and classification, and probabilistic modeling and inference tasks. Moreover, it is common among various scientific and engineering fields, including biology [38, 14, 1, 41, 5, 7, 12, 39]. Often, wellknown parametric density functions (dependent on few parameters), such as the Gaussian or Weibull density distribution functions, are adopted. While this may simplify certain tasks (e.g., computational ones), many of these known density distribution functions are not necessarily suitable for characterizing data that exhibit complex features, such as (spatial and/or temporal) correlations and non-Gaussian characteristics. For instance, as reported in [7], accounting for differences in the distribution densities of gene expressions can lead to improved interpretation of cancer transcriptomic data. Hence, a density estimation framework capable of characterizing a diverse range of properties is highly desirable. A measure transport approach [44, 37, 36] offers this possibility. Optimal measure transport, broadly defined, deals with the problem of minimizing the cost of transporting one (probability) measure to another.


Directionality-Aware Mixture Model Parallel Sampling for Efficient Linear Parameter Varying Dynamical System Learning

arXiv.org Artificial Intelligence

The Linear Parameter Varying Dynamical System (LPV-DS) is an effective approach that learns stable, time-invariant motion policies using statistical modeling and semi-definite optimization to encode complex motions for reactive robot control. Despite its strengths, the LPV-DS learning approach faces challenges due to the curse of dimensionality, impacting model and computational efficiency. To address this, we introduce the Directionality-Aware Mixture Model (DAMM), a novel statistical model that applies the Riemannian metric on the n-sphere $\mathbb{S}^n$ to efficiently blend non-Euclidean directional data with $\mathbb{R}^m$ Euclidean states. Additionally, we develop a hybrid Markov chain Monte Carlo technique that combines Gibbs Sampling with Split/Merge Proposals, allowing for parallel computation to drastically speed up inference. Our extensive empirical tests demonstrate that LPV-DS integrated with DAMM achieves higher reproduction accuracy, better model efficiency, and near real-time/online learning compared to standard estimation methods on various datasets. Lastly, we demonstrate its suitability for incrementally learning multi-behavior policies in real-world robot experiments.


Distributional Offline Policy Evaluation with Predictive Error Guarantees

arXiv.org Artificial Intelligence

We study the problem of estimating the distribution of the return of a policy using an offline dataset that is not generated from the policy, i.e., distributional offline policy evaluation (OPE). We propose an algorithm called Fitted Likelihood Estimation (FLE), which conducts a sequence of Maximum Likelihood Estimation (MLE) and has the flexibility of integrating any state-of-the-art probabilistic generative models as long as it can be trained via MLE. FLE can be used for both finite-horizon and infinite-horizon discounted settings where rewards can be multi-dimensional vectors. Our theoretical results show that for both finite-horizon and infinite-horizon discounted settings, FLE can learn distributions that are close to the ground truth under total variation distance and Wasserstein distance, respectively. Our theoretical results hold under the conditions that the offline data covers the test policy's traces and that the supervised learning MLE procedures succeed. Experimentally, we demonstrate the performance of FLE with two generative models, Gaussian mixture models and diffusion models. For the multi-dimensional reward setting, FLE with diffusion models is capable of estimating the complicated distribution of the return of a test policy.


Explainability as statistical inference

arXiv.org Artificial Intelligence

A wide variety of model explanation approaches have been proposed in recent years, all guided by very different rationales and heuristics. In this paper, we take a new route and cast interpretability as a statistical inference problem. We propose a general deep probabilistic model designed to produce interpretable predictions. The model parameters can be learned via maximum likelihood, and the method can be adapted to any predictor network architecture and any type of prediction problem. Our method is a case of amortized interpretability models, where a neural network is used as a selector to allow for fast interpretation at inference time. Several popular interpretability methods are shown to be particular cases of regularised maximum likelihood for our general model. We propose new datasets with ground truth selection which allow for the evaluation of the features importance map. Using these datasets, we show experimentally that using multiple imputation provides more reasonable interpretations.


Continual Learning via Sequential Function-Space Variational Inference

arXiv.org Machine Learning

Sequential Bayesian inference over predictive functions is a natural framework for continual learning from streams of data. However, applying it to neural networks has proved challenging in practice. Addressing the drawbacks of existing techniques, we propose an optimization objective derived by formulating continual learning as sequential function-space variational inference. In contrast to existing methods that regularize neural network parameters directly, this objective allows parameters to vary widely during training, enabling better adaptation to new tasks. Compared to objectives that directly regularize neural network predictions, the proposed objective allows for more flexible variational distributions and more effective regularization. We demonstrate that, across a range of task sequences, neural networks trained via sequential function-space variational inference achieve better predictive accuracy than networks trained with related methods while depending less on maintaining a set of representative points from previous tasks.


Function-Space Regularization in Neural Networks: A Probabilistic Perspective

arXiv.org Machine Learning

Parameter-space regularization in neural network optimization is a fundamental tool for improving generalization. However, standard parameter-space regularization methods make it challenging to encode explicit preferences about desired predictive functions into neural network training. In this work, we approach regularization in neural networks from a probabilistic perspective and show that by viewing parameter-space regularization as specifying an empirical prior distribution over the model parameters, we can derive a probabilistically well-motivated regularization technique that allows explicitly encoding information about desired predictive functions into neural network training. This method -- which we refer to as function-space empirical Bayes (FSEB) -- includes both parameter- and function-space regularization, is mathematically simple, easy to implement, and incurs only minimal computational overhead compared to standard regularization techniques. We evaluate the utility of this regularization technique empirically and demonstrate that the proposed method leads to near-perfect semantic shift detection, highly-calibrated predictive uncertainty estimates, successful task adaption from pre-trained models, and improved generalization under covariate shift.


Inconsistency of cross-validation for structure learning in Gaussian graphical models

arXiv.org Machine Learning

Despite numerous years of research into the merits and trade-offs of various model selection criteria, obtaining robust results that elucidate the behavior of cross-validation remains a challenging endeavor. In this paper, we highlight the inherent limitations of cross-validation when employed to discern the structure of a Gaussian graphical model. We provide finite-sample bounds on the probability that the Lasso estimator for the neighborhood of a node within a Gaussian graphical model, optimized using a prediction oracle, misidentifies the neighborhood. Our results pertain to both undirected and directed acyclic graphs, encompassing general, sparse covariance structures. To support our theoretical findings, we conduct an empirical investigation of this inconsistency by contrasting our outcomes with other commonly used information criteria through an extensive simulation study. Given that many algorithms designed to learn the structure of graphical models require hyperparameter selection, the precise calibration of this hyperparameter is paramount for accurately estimating the inherent structure. Consequently, our observations shed light on this widely recognized practical challenge.


Generative Posterior Networks for Approximately Bayesian Epistemic Uncertainty Estimation

arXiv.org Machine Learning

In many real-world problems, there is a limited set of training data, but an abundance of unlabeled data. We propose a new method, Generative Posterior Networks (GPNs), that uses unlabeled data to estimate epistemic uncertainty in high-dimensional problems. A GPN is a generative model that, given a prior distribution over functions, approximates the posterior distribution directly by regularizing the network towards samples from the prior. We prove theoretically that our method indeed approximates the Bayesian posterior and show empirically that it improves epistemic uncertainty estimation and scalability over competing methods.


Tractable Function-Space Variational Inference in Bayesian Neural Networks

arXiv.org Machine Learning

Reliable predictive uncertainty estimation plays an important role in enabling the deployment of neural networks to safety-critical settings. A popular approach for estimating the predictive uncertainty of neural networks is to define a prior distribution over the network parameters, infer an approximate posterior distribution, and use it to make stochastic predictions. However, explicit inference over neural network parameters makes it difficult to incorporate meaningful prior information about the data-generating process into the model. In this paper, we pursue an alternative approach. Recognizing that the primary object of interest in most settings is the distribution over functions induced by the posterior distribution over neural network parameters, we frame Bayesian inference in neural networks explicitly as inferring a posterior distribution over functions and propose a scalable function-space variational inference method that allows incorporating prior information and results in reliable predictive uncertainty estimates. We show that the proposed method leads to state-of-the-art uncertainty estimation and predictive performance on a range of prediction tasks and demonstrate that it performs well on a challenging safety-critical medical diagnosis task in which reliable uncertainty estimation is essential.


Joint Signal Recovery and Graph Learning from Incomplete Time-Series

arXiv.org Artificial Intelligence

Learning a graph from data is the key to taking advantage of graph signal processing tools. Most of the conventional algorithms for graph learning require complete data statistics, which might not be available in some scenarios. In this work, we aim to learn a graph from incomplete time-series observations. From another viewpoint, we consider the problem of semi-blind recovery of time-varying graph signals where the underlying graph model is unknown. We propose an algorithm based on the method of block successive upperbound minimization (BSUM), for simultaneous inference of the signal and the graph from incomplete data. Simulation results on synthetic and real time-series demonstrate the performance of the proposed method for graph learning and signal recovery.