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 Bayesian Inference


Cause-Effect Inference in Location-Scale Noise Models: Maximum Likelihood vs. Independence Testing

Neural Information Processing Systems

A fundamental problem of causal discovery is cause-effect inference, to learn the correct causal direction between two random variables. Significant progress has been made through modelling the effect as a function of its cause and a noise term, which allows us to leverage assumptions about the generating function class. The recently introduced heteroscedastic location-scale noise functional models (LSNMs) combine expressive power with identifiability guarantees. LSNM model selection based on maximizing likelihood achieves state-of-the-art accuracy, when the noise distributions are correctly specified. However, through an extensive empirical evaluation, we demonstrate that the accuracy deteriorates sharply when the form of the noise distribution is misspecified by the user.


Poisson-Minibatching for Gibbs Sampling with Convergence Rate Guarantees

Neural Information Processing Systems

Gibbs sampling is a Markov chain Monte Carlo method that is often used for learning and inference on graphical models. Minibatching, in which a small random subset of the graph is used at each iteration, can help make Gibbs sampling scale to large graphical models by reducing its computational cost. In this paper, we propose a new auxiliary-variable minibatched Gibbs sampling method, {\it Poisson-minibatching Gibbs}, which both produces unbiased samples and has a theoretical guarantee on its convergence rate. In comparison to previous minibatched Gibbs algorithms, Poisson-minibatching Gibbs supports fast sampling from continuous state spaces and avoids the need for a Metropolis-Hastings correction on discrete state spaces. We demonstrate the effectiveness of our method on multiple applications and in comparison with both plain Gibbs and previous minibatched methods.


Debiased Bayesian inference for average treatment effects

Neural Information Processing Systems

Bayesian approaches have become increasingly popular in causal inference problems due to their conceptual simplicity, excellent performance and in-built uncertainty quantification ('posterior credible sets'). We investigate Bayesian inference for average treatment effects from observational data, which is a challenging problem due to the missing counterfactuals and selection bias. Working in the standard potential outcomes framework, we propose a data-driven modification to an arbitrary (nonparametric) prior based on the propensity score that corrects for the first-order posterior bias, thereby improving performance. We illustrate our method for Gaussian process (GP) priors using (semi-)synthetic data. Our experiments demonstrate significant improvement in both estimation accuracy and uncertainty quantification compared to the unmodified GP, rendering our approach highly competitive with the state-of-the-art.


Bidirectional Convolutional Poisson Gamma Dynamical Systems

Neural Information Processing Systems

Incorporating the natural document-sentence-word structure into hierarchical Bayesian modeling, we propose convolutional Poisson gamma dynamical systems (PGDS) that introduce not only word-level probabilistic convolutions, but also sentence-level stochastic temporal transitions. With word-level convolutions capturing phrase-level topics and sentence-level transitions capturing how the topic usages evolve over consecutive sentences, we aggregate the topic proportions of all sentences of a document as its feature representation. To consider not only forward but also backward sentence-level information transmissions, we further develop a bidirectional convolutional PGDS to incorporate the full contextual information to represent each sentence. For efficient inference, we construct a convolutional-recurrent inference network, which provides both sentence-level and document-level representations, and introduce a hybrid Bayesian inference scheme combining stochastic-gradient MCMC and amortized variational inference. Experimental results on a variety of document corpora demonstrate that the proposed models can extract expressive multi-level latent representations, including interpretable phrase-level topics and sentence-level temporal transitions as well as discriminative document-level features, achieving state-of-the-art document categorization performance while being memory and computation efficient.


Efficient Bayesian network structure learning via local Markov boundary search

Neural Information Processing Systems

We analyze the complexity of learning directed acyclic graphical models from observational data in general settings without specific distributional assumptions. Our approach is information-theoretic and uses a local Markov boundary search procedure in order to recursively construct ancestral sets in the underlying graphical model. Perhaps surprisingly, we show that for certain graph ensembles, a simple forward greedy search algorithm (i.e. This substantially improves the sample complexity, which we show is at most polynomial in the number of nodes. This is then applied to learn the entire graph under a novel identifiability condition that generalizes existing conditions from the literature.


A Unified View of Label Shift Estimation

Neural Information Processing Systems

Under label shift, the label distribution p(y) might change but the class-conditional distributions p(x y) do not. There are two dominant approaches for estimating the label marginal. BBSE, a moment-matching approach based on confusion matrices, is provably consistent and provides interpretable error bounds. However, a maximum likelihood estimation approach, which we call MLLS, dominates empirically. In this paper, we present a unified view of the two methods and the first theoretical characterization of MLLS.


Dangers of Bayesian Model Averaging under Covariate Shift

Neural Information Processing Systems

Approximate Bayesian inference for neural networks is considered a robust alternative to standard training, often providing good performance on out-of-distribution data. However, Bayesian neural networks (BNNs) with high-fidelity approximate inference via full-batch Hamiltonian Monte Carlo achieve poor generalization under covariate shift, even underperforming classical estimation. We explain this surprising result, showing how a Bayesian model average can in fact be problematic under covariate shift, particularly in cases where linear dependencies in the input features cause a lack of posterior contraction. We additionally show why the same issue does not affect many approximate inference procedures, or classical maximum a-posteriori (MAP) training. Finally, we propose novel priors that improve the robustness of BNNs to many sources of covariate shift.


Bayesian Learning of Optimal Policies in Markov Decision Processes with Countably Infinite State-Space

Neural Information Processing Systems

Models of many real-life applications, such as queueing models of communication networks or computing systems, have a countably infinite state-space. Algorithmic and learning procedures that have been developed to produce optimal policies mainly focus on finite state settings, and do not directly apply to these models. To overcome this lacuna, in this work we study the problem of optimal control of a family of discrete-time countable state-space Markov Decision Processes (MDPs) governed by an unknown parameter \theta\in\Theta, and defined on a countably-infinite state-space \mathcal X \mathbb{Z}_ d, with finite action space \mathcal A, and an unbounded cost function. We take a Bayesian perspective with the random unknown parameter \boldsymbol{\theta} * generated via a given fixed prior distribution on \Theta . To optimally control the unknown MDP, we propose an algorithm based on Thompson sampling with dynamically-sized episodes: at the beginning of each episode, the posterior distribution formed via Bayes' rule is used to produce a parameter estimate, which then decides the policy applied during the episode.


On the Existence of The Adversarial Bayes Classifier

Neural Information Processing Systems

Adversarial robustness is a critical property in a variety of modern machine learning applications. While it has been the subject of several recent theoretical studies, many important questions related to adversarial robustness are still open. In this work, we study a fundamental question regarding Bayes optimality for adversarial robustness. We provide general sufficient conditions under which the existence of a Bayes optimal classifier can be guaranteed for adversarial robustness. Our results can provide a useful tool for a subsequent study of surrogate losses in adversarial robustness and their consistency properties.


Rescuing neural spike train models from bad MLE

Neural Information Processing Systems

The standard approach to fitting an autoregressive spike train model is to maximize the likelihood for one-step prediction. This maximum likelihood estimation (MLE) often leads to models that perform poorly when generating samples recursively for more than one time step. Moreover, the generated spike trains can fail to capture important features of the data and even show diverging firing rates. To alleviate this, we propose to directly minimize the divergence between neural recorded and model generated spike trains using spike train kernels. We develop a method that stochastically optimizes the maximum mean discrepancy induced by the kernel. Experiments performed on both real and synthetic neural data validate the proposed approach, showing that it leads to well-behaving models.