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 Bayesian Inference


Variational Formulation of the Particle Flow Particle Filter

arXiv.org Machine Learning

This paper provides a formulation of the particle flow particle filter from the perspective of variational inference. We show that the transient density used to derive the particle flow particle filter follows a time-scaled trajectory of the Fisher-Rao gradient flow in the space of probability densities. The Fisher-Rao gradient flow is obtained as a continuous-time algorithm for variational inference, minimizing the Kullback-Leibler divergence between a variational density and the true posterior density.


Bayesian Estimation of Extreme Quantiles and the Exceedance Distribution for Paretian Tails

arXiv.org Machine Learning

Estimating extreme quantiles is an important task in many applications, including financial risk management and climatology. More important than estimating the quantile itself is to insure zero coverage error, which implies the quantile estimate should, on average, reflect the desired probability of exceedance. In this research, we show that for unconditional distributions isomorphic to the exponential, a Bayesian quantile estimate results in zero coverage error. This compares to the traditional maximum likelihood method, where the coverage error can be significant under small sample sizes even though the quantile estimate is unbiased. More generally, we prove a sufficient condition for an unbiased quantile estimator to result in coverage error. Interestingly, our results hold by virtue of using a Jeffreys prior for the unknown parameters and is independent of the true prior. We also derive an expression for the distribution, and moments, of future exceedances which is vital for risk assessment. We extend our results to the conditional tail of distributions with asymptotic Paretian tails and, in particular, those in the Fréchet maximum domain of attraction. We illustrate our results using simulations for a variety of light and heavy-tailed distributions.


Machine Learning: a Lecture Note

arXiv.org Machine Learning

This lecture note is intended to prepare early-year master's and PhD students in data science or a related discipline with foundational ideas in machine learning. It starts with basic ideas in modern machine learning with classification as a main target task. These basic ideas include loss formulation, backpropagation, stochastic gradient descent, generalization, model selection as well as fundamental blocks of artificial neural networks. Based on these basic ideas, the lecture note explores in depth the probablistic approach to unsupervised learning, covering directed latent variable models, product of experts, generative adversarial networks and autoregressive models. Finally, the note ends by covering a diverse set of further topics, such as reinforcement learning, ensemble methods and meta-learning. After reading this lecture note, a student should be ready to embark on studying and researching more advanced topics in machine learning and more broadly artificial intelligence.


Likelihood-Free Adaptive Bayesian Inference via Nonparametric Distribution Matching

arXiv.org Machine Learning

When the likelihood is analytically unavailable and computationally intractable, approximate Bayesian computation (ABC) has emerged as a widely used methodology for approximate posterior inference; however, it suffers from severe computational inefficiency in high-dimensional settings or under diffuse priors. To overcome these limitations, we propose Adaptive Bayesian Inference (ABI), a framework that bypasses traditional data-space discrepancies and instead compares distributions directly in posterior space through nonparametric distribution matching. By leveraging a novel Marginally-augmented Sliced Wasserstein (MSW) distance on posterior measures and exploiting its quantile representation, ABI transforms the challenging problem of measuring divergence between posterior distributions into a tractable sequence of one-dimensional conditional quantile regression tasks. Moreover, we introduce a new adaptive rejection sampling scheme that iteratively refines the posterior approximation by updating the proposal distribution via generative density estimation. Theoretically, we establish parametric convergence rates for the trimmed MSW distance and prove that the ABI posterior converges to the true posterior as the tolerance threshold vanishes. Through extensive empirical evaluation, we demonstrate that ABI significantly outperforms data-based Wasserstein ABC, summary-based ABC, and state-of-the-art likelihood-free simulators, especially in high-dimensional or dependent observation regimes.


Utilising Gradient-Based Proposals Within Sequential Monte Carlo Samplers for Training of Partial Bayesian Neural Networks

arXiv.org Machine Learning

Previous research has shown the benefit Bayesian methods can bring to certain problems within deep learning Gal et al. (2017). However, computing the exact posterior distributions of BNNs is a difficult task as traditional methods such as Markov chain Monte Carlo (MCMC) Hastings (1970) are computationally poorly suited to exploring high dimensional spaces and dealing with large amounts of data. Parametric methods such as variational inference are better suited to these difficulties, but only give an approximation to the posterior distribution. These spaces have been found to be highly complex Izmailov et al. (2021a) and therefore variational methods often give a poor approximation of the posterior. Sequential Monte Carlo (SMC) samplers Doucet et al. (2001) are an alternative to MCMC methods which also provide an empirical estimate of the posterior distribution. SMC samplers are instantly parallelisable Varsi et al. (2021b) and therefore can take advantage of the GPU resources commonly used in machine learning to speed up the training process. MCMC methods often require a warm-up period to adapt the hyperparameters, after which the chains can be parallelised. However, the hyperparameters must remain fixed after this warm-up period to obey stationarity. This means that SMC samplers can be more flexible than 1 arXiv:2505.03797v1


Algorithmic Accountability in Small Data: Sample-Size-Induced Bias Within Classification Metrics

arXiv.org Artificial Intelligence

Evaluating machine learning models is crucial not only for determining their technical accuracy but also for assessing their potential societal implications. While the potential for low-sample-size bias in algorithms is well known, we demonstrate the significance of sample-size bias induced by combi-natorics in classification metrics. This revelation challenges the efficacy of these metrics in assessing bias with high resolution, especially when comparing groups of disparate sizes, which frequently arise in social applications. We provide analyses of the bias that appears in several commonly applied metrics and propose a model-agnostic assessment and correction technique. Additionally, we analyze counts of undefined cases in metric calculations, which can lead to misleading evaluations if improperly handled. This work illuminates the previously unrecognized challenge of combinatorics and probability in standard evaluation practices and thereby advances approaches for performing fair and trustworthy classification methods.


Learning Survival Distributions with the Asymmetric Laplace Distribution

arXiv.org Artificial Intelligence

Probabilistic survival analysis models seek to estimate the distribution of the future occurrence (time) of an event given a set of covariates. In recent years, these models have preferred nonparametric specifications that avoid directly estimating survival distributions via discretization. Specifically, they estimate the probability of an individual event at fixed times or the time of an event at fixed probabilities (quantiles), using supervised learning. Borrowing ideas from the quantile regression literature, we propose a parametric survival analysis method based on the Asymmetric Laplace Distribution (ALD). This distribution allows for closed-form calculation of popular event summaries such as mean, median, mode, variation, and quantiles. The model is optimized by maximum likelihood to learn, at the individual level, the parameters (location, scale, and asymmetry) of the ALD distribution. Extensive results on synthetic and real-world data demonstrate that the proposed method outperforms parametric and nonparametric approaches in terms of accuracy, discrimination and calibration.


Bayesian full waveform inversion with sequential surrogate model refinement

arXiv.org Machine Learning

Bayesian formulations of inverse problems are attractive for their ability to incorporate prior knowledge and update probabilistic models as new data become available. Markov chain Monte Carlo (MCMC) methods sample posterior probability density functions (pdfs) but require accurate prior models and many likelihood evaluations. Dimensionality-reduction methods, such as principal component analysis (PCA), can help define the prior and train surrogate models that efficiently approximate costly forward solvers. However, for problems like full waveform inversion, the complex input/output relations often cannot be captured well by surrogate models trained only on prior samples, leading to biased results. Including samples from high-posterior-probability regions can improve accuracy, but these regions are hard to identify in advance. We propose an iterative method that progressively refines the surrogate model. Starting with low-frequency data, we train an initial surrogate and perform an MCMC inversion. The resulting posterior samples are then used to retrain the surrogate, allowing us to expand the frequency bandwidth in the next inversion step. Repeating this process reduces model errors and improves the surrogate's accuracy over the relevant input domain. Ultimately, we obtain a highly accurate surrogate across the full bandwidth, enabling a final MCMC inversion. Numerical results from 2D synthetic crosshole Ground Penetrating Radar (GPR) examples show that our method outperforms ray-based approaches and those relying solely on prior sampling. The overall computational cost is reduced by about two orders of magnitude compared to full finite-difference time-domain modeling.


An Active Inference perspective on Neurofeedback Training

arXiv.org Artificial Intelligence

Neurofeedback training (NFT) aims to teach self-regulation of brain activity through real-time feedback, but suffers from highly variable outcomes and poorly understood mechanisms, hampering its validation. To address these issues, we propose a formal computational model of the NFT closed loop. Using Active Inference, a Bayesian framework modelling perception, action, and learning, we simulate agents interacting with an NFT environment. This enables us to test the impact of design choices (e.g., feedback quality, biomarker validity) and subject factors (e.g., prior beliefs) on training. Simulations show that training effectiveness is sensitive to feedback noise or bias, and to prior beliefs (highlighting the importance of guiding instructions), but also reveal that perfect feedback is insufficient to guarantee high performance. This approach provides a tool for assessing and predicting NFT variability, interpret empirical data, and potentially develop personalized training protocols.


A Computational Model of Inclusive Pedagogy: From Understanding to Application

arXiv.org Artificial Intelligence

Human education transcends mere knowledge transfer, it relies on co-adaptation dynamics -- the mutual adjustment of teaching and learning strategies between agents. Despite its centrality, computational models of co-adaptive teacher-student interactions (T-SI) remain underdeveloped. We argue that this gap impedes Educational Science in testing and scaling contextual insights across diverse settings, and limits the potential of Machine Learning systems, which struggle to emulate and adaptively support human learning processes. To address this, we present a computational T-SI model that integrates contextual insights on human education into a testable framework. We use the model to evaluate diverse T-SI strategies in a realistic synthetic classroom setting, simulating student groups with unequal access to sensory information. Results show that strategies incorporating co-adaptation principles (e.g., bidirectional agency) outperform unilateral approaches (i.e., where only the teacher or the student is active), improving the learning outcomes for all learning types. Beyond the testing and scaling of context-dependent educational insights, our model enables hypothesis generation in controlled yet adaptable environments. This work bridges non-computational theories of human education with scalable, inclusive AI in Education systems, providing a foundation for equitable technologies that dynamically adapt to learner needs.