Bayesian Inference
A Rational Analysis of Cognitive Control in a Speeded Discrimination Task
Mozer, Michael C., Colagrosso, Michael D., Huber, David E.
We are interested in the mechanisms by which individuals monitor and adjust their performance of simple cognitive tasks. We model a speeded discrimination task in which individuals are asked to classify a sequence of stimuli (Jones & Braver, 2001). Response conflict arises when one stimulus class is infrequent relative to another, resulting in more errors and slower reaction times for the infrequent class. How do control processes modulatebehavior based on the relative class frequencies? We explain performance from a rational perspective that casts the goal of individuals as minimizing a cost that depends both on error rate and reaction time.With two additional assumptions of rationality--that class prior probabilities are accurately estimated and that inference is optimal subject to limitations on rate of information transmission--we obtain a good fit to overall RT and error data, as well as trial-by-trial variations in performance.
Neural Implementation of Bayesian Inference in Population Codes
Such a coding strategy is called population coding. It is conceivable that population coding has advantage of being robust to the fluctuation in a single neuron's activity. However, people argue that population coding may have other computationally desirable properties. One such property is to provide a framework for encoding complex objects by using basis functions [1]. This is inspired by the recent progresses in nonlinear function approximation, such as, sparse coding, overcomplete representationand kernel regression. These methods are efficient and show some interesting neuron-like behaviors [2,3].
Probabilistic Inference of Hand Motion from Neural Activity in Motor Cortex
Gao, Yun, Black, Michael J., Bienenstock, Elie, Shoham, Shy, Donoghue, John P.
Statistical learning and probabilistic inference techniques are used to infer thehand position of a subject from multi-electrode recordings of neural activityin motor cortex. First, an array of electrodes provides training dataof neural firing conditioned on hand kinematics. We learn a nonparametric representationof this firing activity using a Bayesian model and rigorously compare it with previous models using cross-validation. Second, we infer a posterior probability distribution over hand motion conditioned on a sequence of neural test data using Bayesian inference. The learned firing models of multiple cells are used to define a non-Gaussian likelihood term which is combined with a prior probability for the kinematics. A particle filtering method is used to represent, update, and propagate the posterior distribution over time. The approach is compared withtraditional linear filtering methods; the results suggest that it may be appropriate for neural prosthetic applications.
A Maximum-Likelihood Approach to Modeling Multisensory Enhancement
Multisensory response enhancement (MRE) is the augmentation of the response of a neuron to sensory input of one modality by simultaneous inputfrom another modality. The maximum likelihood (ML) model presented here modifies the Bayesian model for MRE (Anastasio et al.) by incorporating a decision strategy to maximize the number of correct decisions. Thus the ML model can also deal with the important tasks of stimulus discrimination and identification inthe presence of incongruent visual and auditory cues. It accounts for the inverse effectiveness observed in neurophysiological recordingdata, and it predicts a functional relation between uni-and bimodal levels of discriminability that is testable both in neurophysiological and behavioral experiments.
Using Vocabulary Knowledge in Bayesian Multinomial Estimation
Griffiths, Thomas L., Tenenbaum, Joshua B.
Recent approaches have used uncertainty over the vocabulary of symbols in a multinomial distribution as a means of accounting for sparsity. We present a Bayesian approach that allows weak prior knowledge, in the form of a small set of approximate candidate vocabularies, to be used to dramatically improve the resulting estimates. We demonstrate these improvements in applications to text compression andestimating distributions over words in newsgroup data. 1 Introduction Sparse multinomial distributions arise in many statistical domains, including natural languageprocessing and graphical models. Consequently, a number of approaches toparameter estimation for sparse multinomial distributions have been suggested [3]. These approaches tend to be domain-independent: they make little use of prior knowledge about a specific domain. In many domains where multinomial distributionsare estimated there is often at least weak prior knowledge about' the potential structure of distributions, such as a set of hypotheses about restricted vocabularies from which the symbols might be generated. Such knowledge can be solicited from experts or obtained from unlabeled data. We present a method for Bayesian_parameter estimation in sparse discrete domains that exploits this weak form of prior knowledge to improve estimates over knowledge-free approaches.
TAP Gibbs Free Energy, Belief Propagation and Sparsity
Csató, Lehel, Opper, Manfred, Winther, Ole
The adaptive TAP Gibbs free energy for a general densely connected probabilistic model with quadratic interactions and arbritary single site constraints is derived. We show how a specific sequential minimization of the free energy leads to a generalization of Minka's expectation propagation. Lastly,we derive a sparse representation version of the sequential algorithm. The usefulness of the approach is demonstrated on classification anddensity estimation with Gaussian processes and on an independent componentanalysis problem.
Boosting and Maximum Likelihood for Exponential Models
Lebanon, Guy, Lafferty, John D.
We derive an equivalence between AdaBoost and the dual of a convex optimization problem, showing that the only difference between minimizing theexponential loss used by AdaBoost and maximum likelihood for exponential models is that the latter requires the model to be normalized toform a conditional probability distribution over labels. In addition to establishing a simple and easily understood connection between the two methods, this framework enables us to derive new regularization procedures for boosting that directly correspond to penalized maximum likelihood. Experiments on UCI datasets support our theoretical analysis andgive additional insight into the relationship between boosting and logistic regression.
Causal Categorization with Bayes Nets
A theory of categorization is presented in which knowledge of causal relationships between category features is represented as a Bayesian network. Referred to as causal-model theory, this theory predicts that objects are classified as category members to the extent they are likely to have been produced by a categorys causal model. On this view, people have models of the world that lead them to expect a certain distribution of features in category members (e.g., correlations between feature pairs that are directly connected by causal relationships), and consider exemplars good category members when they manifest those expectations. These expectations include sensitivity to higher-order feature interactions that emerge from the asymmetries inherent in causal relationships. Research on the topic of categorization has traditionally focused on the problem of learning new categories given observations of category members.
Probabilistic Abstraction Hierarchies
Segal, Eran, Koller, Daphne, Ormoneit, Dirk
Many domains are naturally organized in an abstraction hierarchy or taxonomy, where the instances in "nearby" classes in the taxonomy are similar. In this paper, weprovide a general probabilistic framework for clustering data into a set of classes organized as a taxonomy, where each class is associated with a probabilistic modelfrom which the data was generated. The clustering algorithm simultaneously optimizes three things: the assignment of data instances to clusters, themodels associated with the clusters, and the structure of the abstraction hierarchy. A unique feature of our approach is that it utilizes global optimization algorithms for both of the last two steps, reducing the sensitivity to noise and the propensity to local maxima that are characteristic of algorithms such as hierarchical agglomerativeclustering that only take local steps. We provide a theoretical analysis for our algorithm, showing that it converges to a local maximum of the joint likelihood of model and data.