Bayesian Inference
Probabilistic Inference of Hand Motion from Neural Activity in Motor Cortex
Gao, Yun, Black, Michael J., Bienenstock, Elie, Shoham, Shy, Donoghue, John P.
Statistical learning and probabilistic inference techniques are used to infer thehand position of a subject from multi-electrode recordings of neural activityin motor cortex. First, an array of electrodes provides training dataof neural firing conditioned on hand kinematics. We learn a nonparametric representationof this firing activity using a Bayesian model and rigorously compare it with previous models using cross-validation. Second, we infer a posterior probability distribution over hand motion conditioned on a sequence of neural test data using Bayesian inference. The learned firing models of multiple cells are used to define a non-Gaussian likelihood term which is combined with a prior probability for the kinematics. A particle filtering method is used to represent, update, and propagate the posterior distribution over time. The approach is compared withtraditional linear filtering methods; the results suggest that it may be appropriate for neural prosthetic applications.
A Maximum-Likelihood Approach to Modeling Multisensory Enhancement
Multisensory response enhancement (MRE) is the augmentation of the response of a neuron to sensory input of one modality by simultaneous inputfrom another modality. The maximum likelihood (ML) model presented here modifies the Bayesian model for MRE (Anastasio et al.) by incorporating a decision strategy to maximize the number of correct decisions. Thus the ML model can also deal with the important tasks of stimulus discrimination and identification inthe presence of incongruent visual and auditory cues. It accounts for the inverse effectiveness observed in neurophysiological recordingdata, and it predicts a functional relation between uni-and bimodal levels of discriminability that is testable both in neurophysiological and behavioral experiments.
A Quantitative Model of Counterfactual Reasoning
Yarlett, Daniel, Ramscar, Michael
In this paper we explore two quantitative approaches to the modelling of counterfactual reasoning - a linear and a noisy-OR model - based on information containedin conceptual dependency networks. Empirical data is acquired in a study and the fit of the models compared to it. We conclude byconsidering the appropriateness of nonparametric approaches to counterfactual reasoning, and examining the prospects for other parametric approachesin the future.
Causal Categorization with Bayes Nets
A theory of categorization is presented in which knowledge of causal relationships between category features is represented as a Bayesian network. Referred to as causal-model theory, this theory predicts that objects are classified as category members to the extent they are likely to have been produced by a categorys causal model. On this view, people have models of the world that lead them to expect a certain distribution of features in category members (e.g., correlations between feature pairs that are directly connected by causal relationships), and consider exemplars good category members when they manifest those expectations. These expectations include sensitivity to higher-order feature interactions that emerge from the asymmetries inherent in causal relationships. Research on the topic of categorization has traditionally focused on the problem of learning new categories given observations of category members.
A Bayesian Model Predicts Human Parse Preference and Reading Times in Sentence Processing
Narayanan, S., Jurafsky, Daniel
Narayanan and Jurafsky (1998) proposed that human language comprehension canbe modeled by treating human comprehenders as Bayesian reasoners, and modeling the comprehension process with Bayesian decision trees.In this paper we extend the Narayanan and Jurafsky model to make further predictions about reading time given the probability of difference parses or interpretations, and test the model against reading time data from a psycholinguistic experiment.
A Rational Analysis of Cognitive Control in a Speeded Discrimination Task
Mozer, Michael C., Colagrosso, Michael D., Huber, David E.
We are interested in the mechanisms by which individuals monitor and adjust their performance of simple cognitive tasks. We model a speeded discrimination task in which individuals are asked to classify a sequence of stimuli (Jones & Braver, 2001). Response conflict arises when one stimulus class is infrequent relative to another, resulting in more errors and slower reaction times for the infrequent class. How do control processes modulatebehavior based on the relative class frequencies? We explain performance from a rational perspective that casts the goal of individuals as minimizing a cost that depends both on error rate and reaction time.With two additional assumptions of rationality--that class prior probabilities are accurately estimated and that inference is optimal subject to limitations on rate of information transmission--we obtain a good fit to overall RT and error data, as well as trial-by-trial variations in performance.
Robust Feature Selection by Mutual Information Distributions
Zaffalon, Marco, Hutter, Marcus
Mutual information is widely used in artificial intelligence, in a descriptive way, to measure the stochastic dependence of discrete random variables. In order to address questions such as the reliability of the empirical value, one must consider sample-to-population inferential approaches. This paper deals with the distribution of mutual information, as obtained in a Bayesian framework by a second-order Dirichlet prior distribution. The exact analytical expression for the mean and an analytical approximation of the variance are reported. Asymptotic approximations of the distribution are proposed. The results are applied to the problem of selecting features for incremental learning and classification of the naive Bayes classifier. A fast, newly defined method is shown to outperform the traditional approach based on empirical mutual information on a number of real data sets. Finally, a theoretical development is reported that allows one to efficiently extend the above methods to incomplete samples in an easy and effective way.
Entropy estimation of symbol sequences
Schürmann, Thomas, Grassberger, Peter
We discuss algorithms for estimating the Shannon entropy h of finite symbol sequences with long range correlations. In particular, we consider algorithms which estimate h from the code lengths produced by some compression algorithm. Our interest is in describing their convergence with sequence length, assuming no limits for the space and time complexities of the compression algorithms. A scaling law is proposed for extrapolation from finite sample lengths. This is applied to sequences of dynamical systems in non-trivial chaotic regimes, a 1-D cellular automaton, and to written English texts.
Ensemble Learning and Linear Response Theory for ICA
Højen-Sørensen, Pedro A. d. F. R., Winther, Ole, Hansen, Lars Kai
We propose a general Bayesian framework for performing independent (leA) which relies on ensemble learning and linearcomponent analysis response theory known from statistical physics. We apply it to both discrete and continuous sources. For the continuous source the underdetermined (overcomplete) case is studied. The naive mean-field approach fails in this case whereas linear response theory-which gives an improved estimate of covariances-is very efficient. The examples given are for sources without temporal correlations. However, this derivation can easily to treat temporal correlations. Finally, the frameworkbe extended of generating new leA algorithms without needingoffers a simple way to define the prior distribution of the sources explicitly.
Discovering Hidden Variables: A Structure-Based Approach
Elidan, Gal, Lotner, Noam, Friedman, Nir, Koller, Daphne
A serious problem in learning probabilistic models is the presence of hidden variables. These variables are not observed, yet interact with several of the observed variables. As such, they induce seemingly complex dependencies among the latter. In recent years, much attention has been devoted to the development of algorithms for learning parameters, and in some cases structure, in the presence of hidden variables. In this paper, we address the related problem of detecting hidden variables that interact with the observed variables.