Determinantal point processes (DPPs) are elegant probabilistic models of repulsion that arise in quantum physics and random matrix theory. In contrast to traditional structured models like Markov random fields, which become intractable and hard to approximate in the presence of negative correlations, DPPs offer efficient and exact algorithms for sampling, marginalization, conditioning, and other inference tasks. We provide a gentle introduction to DPPs, focusing on the intuitions, algorithms, and extensions that are most relevant to the machine learning community, and show how DPPs can be applied to real-world applications like finding diverse sets of high-quality search results, building informative summaries by selecting diverse sentences from documents, modeling non-overlapping human poses in images or video, and automatically building timelines of important news stories.

It has been argued that in supervised classification tasks, in practice it may be more sensible to perform model selection with respect to some more focused model selection score, like the supervised (conditional) marginal likelihood, than with respect to the standard marginal likelihood criterion. However, for most Bayesian network models, computing the supervised marginal likelihood score takes exponential time with respect to the amount of observed data. In this paper, we consider diagnostic Bayesian network classifiers where the significant model parameters represent conditional distributions for the class variable, given the values of the predictor variables, in which case the supervised marginal likelihood can be computed in linear time with respect to the data. As the number of model parameters grows in this case exponentially with respect to the number of predictors, we focus on simple diagnostic models where the number of relevant predictors is small, and suggest two approaches for applying this type of models in classification. The first approach is based on mixtures of simple diagnostic models, while in the second approach we apply the small predictor sets of the simple diagnostic models for augmenting the Naive Bayes classifier.

The Information bottleneck method is an unsupervised non-parametric data organization technique. Given a joint distribution P(A,B), this method constructs a new variable T that extracts partitions, or clusters, over the values of A that are informative about B. The information bottleneck has already been applied to document classification, gene expression, neural code, and spectral analysis. In this paper, we introduce a general principled framework for multivariate extensions of the information bottleneck method. This allows us to consider multiple systems of data partitions that are inter-related. Our approach utilizes Bayesian networks for specifying the systems of clusters and what information each captures. We show that this construction provides insight about bottleneck variations and enables us to characterize solutions of these variations. We also present a general framework for iterative algorithms for constructing solutions, and apply it to several examples.

We are developing a general framework for using learned Bayesian models for decision-theoretic control of search and reasoningalgorithms. We illustrate the approach on the specific task of controlling both general and domain-specific solvers on a hard class of structured constraint satisfaction problems. A successful strategyfor reducing the high (and even infinite) variance in running time typically exhibited by backtracking search algorithms is to cut off and restart the search if a solution is not found within a certainamount of time. Previous work on restart strategies have employed fixed cut off values. We show how to create a dynamic cut off strategy by learning a Bayesian model that predicts the ultimate length of a trial based on observing the early behavior of the search algorithm. Furthermore, we describe the general conditions under which a dynamic restart strategy can outperform the theoretically optimal fixed strategy.

We propose using recognition networks for approximate inference inBayesian networks (BNs). A recognition network is a multilayerperception (MLP) trained to predict posterior marginals given observedevidence in a particular BN. The input to the MLP is a vector of thestates of the evidential nodes. The activity of an output unit isinterpreted as a prediction of the posterior marginal of thecorresponding variable. The MLP is trained using samples generated fromthe corresponding BN.We evaluate a recognition network that was trained to do inference ina large Bayesian network, similar in structure and complexity to theQuick Medical Reference, Decision Theoretic (QMR-DT). Our networkis a binary, two-layer, noisy-OR network containing over 4000 potentially observable nodes and over 600 unobservable, hidden nodes. Inreal medical diagnosis, most observables are unavailable, and there isa complex and unknown bias that selects which ones are provided. Weincorporate a very basic type of selection bias in our network: a knownpreference that available observables are positive rather than negative.Even this simple bias has a significant effect on the posterior. We compare the performance of our recognition network tostate-of-the-art approximate inference algorithms on a large set oftest cases. In order to evaluate the effect of our simplistic modelof the selection bias, we evaluate algorithms using a variety ofincorrectly modeled observation biases. Recognition networks performwell using both correct and incorrect observation biases.

In this paper we compare three different architectures for the evaluation of influence diagrams: HUGIN, Shafer-Shenoy, and Lazy Evaluation architecture. The computational complexity of the architectures are compared on the LImited Memory Influence Diagram (LIMID): a diagram where only the requiste information for the computation of the optimal policies are depicted. Because the requsite information is explicitly represented in the LIMID the evaluation can take advantage of it, and significant savings in computational can be obtained. In this paper we show how the obtained savings is considerably increased when the computations performed on the LIMID is according to the Lazy Evaluation scheme.

We present a general framework for defining priors on model structure and sampling from the posterior using the Metropolis-Hastings algorithm. The key idea is that structure priors are defined via a probability tree and that the proposal mechanism for the Metropolis-Hastings algorithm operates by traversing this tree, thereby defining a cheaply computable acceptance probability. We have applied this approach to Bayesian net structure learning using a number of priors and tree traversal strategies. Our results show that these must be chosen appropriately for this approach to be successful.

Graphical Markov models determined by acyclic digraphs (ADGs), also called directed acyclic graphs (DAGs), are widely studied in statistics, computer science (as Bayesian networks), operations research (as influence diagrams), and many related fields. Because different ADGs may determine the same Markov equivalence class, it long has been of interest to determine the efficiency gained in model specification and search by working directly with Markov equivalence classes of ADGs rather than with ADGs themselves. A computer program was written to enumerate the equivalence classes of ADG models as specified by Pearl & Verma's equivalence criterion. The program counted equivalence classes for models up to and including 10 vertices. The ratio of number of classes to ADGs appears to approach an asymptote of about 0.267. Classes were analyzed according to number of edges and class size. By edges, the distribution of number of classes approaches a Gaussian shape. By class size, classes of size 1 are most common, with the proportions for larger sizes initially decreasing but then following a more irregular pattern. The maximum number of classes generated by any undirected graph was found to increase approximately factorially. The program also includes a new variation of orderly algorithm for generating undirected graphs.

A novel method for estimating Bayesian network (BN) parameters from data is presented which provides improved performance on test data. Previous research has shown the value of representing conditional probability distributions (CPDs) via neural networks(Neal 1992), noisy-OR gates (Neal 1992, Diez 1993)and decision trees (Friedman and Goldszmidt 1996).The Bernoulli mixture network (BMN) explicitly represents the CPDs of discrete BN nodes as mixtures of local distributions,each having a different set of parents.This increases the space of possible structures which can be considered,enabling the CPDs to have finer-grained dependencies.The resulting estimation procedure induces a modelthat is better able to emulate the underlying interactions occurring in the data than conventional conditional Bernoulli network models.The results for artificially generated data indicate that overfitting is best reduced by restricting the complexity of candidate mixture substructures local to each node. Furthermore, mixtures of very simple substructures can perform almost as well as more complex ones.The BMN is also applied to data collected from an online adventure game with an application to keyhole plan recognition. The results show that the BMN-based model brings a dramatic improvement in performance over a conventional BN model.

We present two sampling algorithms for probabilistic confidence inference in Bayesian networks. These two algorithms (we call them AIS-BN-mu and AIS-BN-sigma algorithms) guarantee that estimates of posterior probabilities are with a given probability within a desired precision bound. Our algorithms are based on recent advances in sampling algorithms for (1) estimating the mean of bounded random variables and (2) adaptive importance sampling in Bayesian networks. In addition to a simple stopping rule for sampling that they provide, the AIS-BN-mu and AIS-BN-sigma algorithms are capable of guiding the learning process in the AIS-BN algorithm. An empirical evaluation of the proposed algorithms shows excellent performance, even for very unlikely evidence.