Bayesian Inference
Context-Specific Approximation in Probabilistic Inference
There is evidence that the numbers in probabilistic inference don't really matter. This paper considers the idea that we can make a probabilistic model simpler by making fewer distinctions. Unfortunately, the level of a Bayesian network seems too coarse; it is unlikely that a parent will make little difference for all values of the other parents. In this paper we consider an approximation scheme where distinctions can be ignored in some contexts, but not in other contexts. We elaborate on a notion of a parent context that allows a structured context-specific decomposition of a probability distribution and the associated probabilistic inference scheme called probabilistic partial evaluation (Poole 1997). This paper shows a way to simplify a probabilistic model by ignoring distinctions which have similar probabilities, a method to exploit the simpler model, a bound on the resulting errors, and some preliminary empirical results on simple networks.
Utility Elicitation as a Classification Problem
Chajewska, Urszula, Getoor, Lise, Norman, Joseph, Shahar, Yuval
We investigate the application of classification techniques to utility elicitation. In a decision problem, two sets of parameters must generally be elicited: the probabilities and the utilities. While the prior and conditional probabilities in the model do not change from user to user, the utility models do. Thus it is necessary to elicit a utility model separately for each new user. Elicitation is long and tedious, particularly if the outcome space is large and not decomposable. There are two common approaches to utility function elicitation. The first is to base the determination of the users utility function solely ON elicitation OF qualitative preferences.The second makes assumptions about the form AND decomposability OF the utility function.Here we take a different approach: we attempt TO identify the new USERs utility function based on classification relative to a database of previously collected utility functions. We do this by identifying clusters of utility functions that minimize an appropriate distance measure. Having identified the clusters, we develop a classification scheme that requires many fewer and simpler assessments than full utility elicitation and is more robust than utility elicitation based solely on preferences. We have tested our algorithm on a small database of utility functions in a prenatal diagnosis domain and the results are quite promising.
Linear-Nonlinear-Poisson Neuron Networks Perform Bayesian Inference On Boltzmann Machines
One conjecture in both deep learning and classical connectionist viewpoint is that the biological brain implements certain kinds of deep networks as its back-end. However, to our knowledge, a detailed correspondence has not yet been set up, which is important if we want to bridge between neuroscience and machine learning. Recent researches emphasized the biological plausibility of Linear-Nonlinear-Poisson (LNP) neuron model. We show that with neurally plausible settings, the whole network is capable of representing any Boltzmann machine and performing a semi-stochastic Bayesian inference algorithm lying between Gibbs sampling and variational inference.
Generalized double Pareto shrinkage
Armagan, Artin, Dunson, David, Lee, Jaeyong
We propose a generalized double Pareto prior for Bayesian shrinkage estimation and inferences in linear models. The prior can be obtained via a scale mixture of Laplace or normal distributions, forming a bridge between the Laplace and Normal-Jeffreys' priors. While it has a spike at zero like the Laplace density, it also has a Student's $t$-like tail behavior. Bayesian computation is straightforward via a simple Gibbs sampling algorithm. We investigate the properties of the maximum a posteriori estimator, as sparse estimation plays an important role in many problems, reveal connections with some well-established regularization procedures, and show some asymptotic results. The performance of the prior is tested through simulations and an application.
Transfer Topic Modeling with Ease and Scalability
Kang, Jeon-Hyung, Ma, Jun, Liu, Yan
The increasing volume of short texts generated on social media sites, such as Twitter or Facebook, creates a great demand for effective and efficient topic modeling approaches. While latent Dirichlet allocation (LDA) can be applied, it is not optimal due to its weakness in handling short texts with fast-changing topics and scalability concerns. In this paper, we propose a transfer learning approach that utilizes abundant labeled documents from other domains (such as Yahoo! News or Wikipedia) to improve topic modeling, with better model fitting and result interpretation. Specifically, we develop Transfer Hierarchical LDA (thLDA) model, which incorporates the label information from other domains via informative priors. In addition, we develop a parallel implementation of our model for large-scale applications. We demonstrate the effectiveness of our thLDA model on both a microblogging dataset and standard text collections including AP and RCV1 datasets.
Mixture Gaussian Process Conditional Heteroscedasticity
Platanios, Emmanouil A., Chatzis, Sotirios P.
Generalized autoregressive conditional heteroscedasticity (GARCH) models have long been considered as one of the most successful families of approaches for volatility modeling in financial return series. In this paper, we propose an alternative approach based on methodologies widely used in the field of statistical machine learning. Specifically, we propose a novel nonparametric Bayesian mixture of Gaussian process regression models, each component of which models the noise variance process that contaminates the observed data as a separate latent Gaussian process driven by the observed data. This way, we essentially obtain a mixture Gaussian process conditional heteroscedasticity (MGPCH) model for volatility modeling in financial return series. We impose a nonparametric prior with power-law nature over the distribution of the model mixture components, namely the Pitman-Yor process prior, to allow for better capturing modeled data distributions with heavy tails and skewness. Finally, we provide a copula- based approach for obtaining a predictive posterior for the covariances over the asset returns modeled by means of a postulated MGPCH model. We evaluate the efficacy of our approach in a number of benchmark scenarios, and compare its performance to state-of-the-art methodologies.
Accelerating EM: An Empirical Study
Ortiz, Luis E., Kaelbling, Leslie Pack
Many applications require that we learn the parameters of a model from data. EM is a method used to learn the parameters of probabilistic models for which the data for some of the variables in the models is either missing or hidden. There are instances in which this method is slow to converge. Therefore, several accelerations have been proposed to improve the method. None of the proposed acceleration methods are theoretically dominant and experimental comparisons are lacking. In this paper, we present the different proposed accelerations and try to compare them experimentally. From the results of the experiments, we argue that some acceleration of EM is always possible, but that which acceleration is superior depends on properties of the problem.
Loopy Belief Propagation for Approximate Inference: An Empirical Study
Murphy, Kevin, Weiss, Yair, Jordan, Michael I.
Recently, researchers have demonstrated that loopy belief propagation - the use of Pearls polytree algorithm IN a Bayesian network WITH loops OF error- correcting codes.The most dramatic instance OF this IS the near Shannon - limit performance OF Turbo Codes codes whose decoding algorithm IS equivalent TO loopy belief propagation IN a chain - structured Bayesian network. IN this paper we ask : IS there something special about the error - correcting code context, OR does loopy propagation WORK AS an approximate inference schemeIN a more general setting? We compare the marginals computed using loopy propagation TO the exact ones IN four Bayesian network architectures, including two real - world networks : ALARM AND QMR.We find that the loopy beliefs often converge AND WHEN they do, they give a good approximation TO the correct marginals.However,ON the QMR network, the loopy beliefs oscillated AND had no obvious relationship TO the correct posteriors. We present SOME initial investigations INTO the cause OF these oscillations, AND show that SOME simple methods OF preventing them lead TO the wrong results.
On Supervised Selection of Bayesian Networks
Kontkanen, Petri, Myllymaki, Petri, Silander, Tomi, Tirri, Henry
Given a set of possible models (e.g., Bayesian network structures) and a data sample, in the unsupervised model selection problem the task is to choose the most accurate model with respect to the domain joint probability distribution. In contrast to this, in supervised model selection it is a priori known that the chosen model will be used in the future for prediction tasks involving more ``focused' predictive distributions. Although focused predictive distributions can be produced from the joint probability distribution by marginalization, in practice the best model in the unsupervised sense does not necessarily perform well in supervised domains. In particular, the standard marginal likelihood score is a criterion for the unsupervised task, and, although frequently used for supervised model selection also, does not perform well in such tasks. In this paper we study the performance of the marginal likelihood score empirically in supervised Bayesian network selection tasks by using a large number of publicly available classification data sets, and compare the results to those obtained by alternative model selection criteria, including empirical crossvalidation methods, an approximation of a supervised marginal likelihood measure, and a supervised version of Dawids prequential(predictive sequential) principle.The results demonstrate that the marginal likelihood score does NOT perform well FOR supervised model selection, WHILE the best results are obtained BY using Dawids prequential r napproach.
Inferring Parameters and Structure of Latent Variable Models by Variational Bayes
Current methods for learning graphical models with latent variables and a fixed structure estimate optimal values for the model parameters. Whereas this approach usually produces overfitting and suboptimal generalization performance, carrying out the Bayesian program of computing the full posterior distributions over the parameters remains a difficult problem. Moreover, learning the structure of models with latent variables, for which the Bayesian approach is crucial, is yet a harder problem. In this paper I present the Variational Bayes framework, which provides a solution to these problems. This approach approximates full posterior distributions over model parameters and structures, as well as latent variables, in an analytical manner without resorting to sampling methods. Unlike in the Laplace approximation, these posteriors are generally non-Gaussian and no Hessian needs to be computed. The resulting algorithm generalizes the standard Expectation Maximization algorithm, and its convergence is guaranteed. I demonstrate that this algorithm can be applied to a large class of models in several domains, including unsupervised clustering and blind source separation.