Bayesian Inference
Minimum Encoding Approaches for Predictive Modeling
Grunwald, Peter D, Kontkanen, Petri, Myllymaki, Petri, Silander, Tomi, Tirri, Henry
We analyze differences between two information-theoretically motivated approaches to statistical inference and model selection: the Minimum Description Length (MDL) principle, and the Minimum Message Length (MML) principle. Based on this analysis, we present two revised versions of MML: a pointwise estimator which gives the MML-optimal single parameter model, and a volumewise estimator which gives the MML-optimal region in the parameter space. Our empirical results suggest that with small data sets, the MDL approach yields more accurate predictions than the MML estimators. The empirical results also demonstrate that the revised MML estimators introduced here perform better than the original MML estimator suggested by Wallace and Freeman.
Graphical Models and Exponential Families
Geiger, Dan, Meek, Christopher
We provide a classification of graphical models according to their representation as subfamilies of exponential families. Undirected graphical models with no hidden variables are linear exponential families (LEFs), directed acyclic graphical models and chain graphs with no hidden variables, including Bayesian networks with several families of local distributions, are curved exponential families (CEFs) and graphical models with hidden variables are stratified exponential families (SEFs). An SEF is a finite union of CEFs satisfying a frontier condition. In addition, we illustrate how one can automatically generate independence and non-independence constraints on the distributions over the observable variables implied by a Bayesian network with hidden variables. The relevance of these results for model selection is examined.
Probabilistic Inference in Influence Diagrams
This paper is about reducing influence diagram (ID) evaluation into Bayesian network (BN) inference problems. Such reduction is interesting because it enables one to readily use one's favorite BN inference algorithm to efficiently evaluate IDs. Two such reduction methods have been proposed previously (Cooper 1988, Shachter and Peot 1992). This paper proposes a new method. The BN inference problems induced by the mew method are much easier to solve than those induced by the two previous methods.
Bayesian Networks from the Point of View of Chain Graphs
AThe paper gives a few arguments in favour of the use of chain graphs for description of probabilistic conditional independence structures. Every Bayesian network model can be equivalently introduced by means of a factorization formula with respect to a chain graph which is Markov equivalent to the Bayesian network. A graphical characterization of such graphs is given. The class of equivalent graphs can be represented by a distinguished graph which is called the largest chain graph. The factorization formula with respect to the largest chain graph is a basis of a proposal of how to represent the corresponding (discrete) probability distribution in a computer (i.e. parametrize it). This way does not depend on the choice of a particular Bayesian network from the class of equivalent networks and seems to be the most efficient way from the point of view of memory demands. A separation criterion for reading independency statements from a chain graph is formulated in a simpler way. It resembles the well-known d-separation criterion for Bayesian networks and can be implemented locally.
Decision Theoretic Foundations of Graphical Model Selection
Sebastiani, Paola, Ramoni, Marco
This paper describes a decision theoretic formulation of learning the graphical structure of a Bayesian Belief Network from data. This framework subsumes the standard Bayesian approach of choosing the model with the largest posterior probability as the solution of a decision problem with a 0-1 loss function and allows the use of more general loss functions able to trade-off the complexity of the selected model and the error of choosing an oversimplified model. A new class of loss functions, called disintegrable, is introduced, to allow the decision problem to match the decomposability of the graphical model. With this class of loss functions, the optimal solution to the decision problem can be found using an efficient bottom-up search strategy.
Context-Specific Approximation in Probabilistic Inference
There is evidence that the numbers in probabilistic inference don't really matter. This paper considers the idea that we can make a probabilistic model simpler by making fewer distinctions. Unfortunately, the level of a Bayesian network seems too coarse; it is unlikely that a parent will make little difference for all values of the other parents. In this paper we consider an approximation scheme where distinctions can be ignored in some contexts, but not in other contexts. We elaborate on a notion of a parent context that allows a structured context-specific decomposition of a probability distribution and the associated probabilistic inference scheme called probabilistic partial evaluation (Poole 1997). This paper shows a way to simplify a probabilistic model by ignoring distinctions which have similar probabilities, a method to exploit the simpler model, a bound on the resulting errors, and some preliminary empirical results on simple networks.
Learning From What You Don't Observe
Peot, Mark Alan, Shachter, Ross D.
The process of diagnosis involves learning about the state of a system from various observations of symptoms or findings about the system. Sophisticated Bayesian (and other) algorithms have been developed to revise and maintain beliefs about the system as observations are made. Nonetheless, diagnostic models have tended to ignore some common sense reasoning exploited by human diagnosticians; In particular, one can learn from which observations have not been made, in the spirit of conversational implicature. There are two concepts that we describe to extract information from the observations not made. First, some symptoms, if present, are more likely to be reported before others. Second, most human diagnosticians and expert systems are economical in their data-gathering, searching first where they are more likely to find symptoms present. Thus, there is a desirable bias toward reporting symptoms that are present. We develop a simple model for these concepts that can significantly improve diagnostic inference.
Logarithmic Time Parallel Bayesian Inference
I present a parallel algorithm for exact probabilistic inference in Bayesian networks. For polytree networks with n variables, the worst-case time complexity is O(log n) on a CREW PRAM (concurrent-read, exclusive-write parallel random-access machine) with n processors, for any constant number of evidence variables. For arbitrary networks, the time complexity is O(r^{3w}*log n) for n processors, or O(w*log n) for r^{3w}*n processors, where r is the maximum range of any variable, and w is the induced width (the maximum clique size), after moralizing and triangulating the network.
Lazy Propagation in Junction Trees
Madsen, Anders L., Jensen, Finn Verner
The efficiency of algorithms using secondary structures for probabilistic inference in Bayesian networks can be improved by exploiting independence relations induced by evidence and the direction of the links in the original network. In this paper we present an algorithm that on-line exploits independence relations induced by evidence and the direction of the links in the original network to reduce both time and space costs. Instead of multiplying the conditional probability distributions for the various cliques, we determine on-line which potentials to multiply when a message is to be produced. The performance improvement of the algorithm is emphasized through empirical evaluations involving large real world Bayesian networks, and we compare the method with the HUGIN and Shafer-Shenoy inference algorithms.
Using Qualitative Relationships for Bounding Probability Distributions
Liu, Chao-Lin, Wellman, Michael P.
Using the signs of qualitative relationships, we can implement abstraction operations that are guaranteed to bound the distributions of interest in the desired direction. By evaluating incrementally improved approximate networks, our algorithm obtains monotonically tightening bounds that converge to exact distributions. For supermodular utility functions, the tightening bounds monotonically reduce the set of admissible decision alternatives as well. 1 Introduction Approximation techniques have gained increasing interest among those employing Bayesian networks for probabilistic reasoning, despite the fact that computing a desired probability distribution to a fixed degree of accuracy has been shown to be NPhard (Dagum & Luby 1993). Approximation techniques offer reasonable prospects of significant accuracy, and increased opportunity to consider applications larger than we could otherwise. For instance, approximation techniques can be useful for applications that need to respond to requests for solutions under time constraints. By appropriately managing the reasoning process, we may obtain approximate solutions that meet the needs of these applications in cases where we would not be able to compute exact solutions given the time constraints.