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 Bayesian Inference


Bayesian inference as iterated random functions with applications to sequential inference in graphical models

Neural Information Processing Systems

We propose a general formalism of iterated random functions with semigroup property, under which exact and approximate Bayesian posterior updates can be viewed as specific instances. A convergence theory for iterated random functions is presented. As an application of the general theory we analyze convergence behaviors of exact and approximate message-passing algorithms that arise in a sequential change point detection problem formulated via a latent variable directed graphical model. The sequential inference algorithm and its supporting theory are illustrated by simulated examples.


On the Complexity and Approximation of Binary Evidence in Lifted Inference

Neural Information Processing Systems

Lifted inference algorithms exploit symmetries in probabilistic models to speed up inference. They show impressive performance when calculating unconditional probabilities in relational models, but often resort to non-lifted inference when computing conditional probabilities. The reason is that conditioning on evidence breaks many of the model's symmetries, which preempts standard lifting techniques. Recent theoretical results show, for example, that conditioning on evidence which corresponds to binary relations is #P-hard, suggesting that no lifting is to be expected in the worst case. In this paper, we balance this grim result by identifying the Boolean rank of the evidence as a key parameter for characterizing the complexity of conditioning in lifted inference. In particular, we show that conditioning on binary evidence with bounded Boolean rank is efficient. This opens up the possibility of approximating evidence by a low-rank Boolean matrix factorization, which we investigate both theoretically and empirically.


Analyzing Hogwild Parallel Gaussian Gibbs Sampling

Neural Information Processing Systems

Sampling inference methods are computationally difficult to scale for many models in part because global dependencies can reduce opportunities for parallel computation. Without strict conditional independence structure among variables, standard Gibbs sampling theory requires sample updates to be performed sequentially, even if dependence between most variables is not strong. Empirical work has shown that some models can be sampled effectively by going Hogwild'' and simply running Gibbs updates in parallel with only periodic global communication, but the successes and limitations of such a strategy are not well understood. As a step towards such an understanding, we study the Hogwild Gibbs sampling strategy in the context of Gaussian distributions. We develop a framework which provides convergence conditions and error bounds along with simple proofs and connections to methods in numerical linear algebra. In particular, we show that if the Gaussian precision matrix is generalized diagonally dominant, then any Hogwild Gibbs sampler, with any update schedule or allocation of variables to processors, yields a stable sampling process with the correct sample mean. "


Bayesian inference for low rank spatiotemporal neural receptive fields

Neural Information Processing Systems

The receptive field (RF) of a sensory neuron describes how the neuron integrates sensory stimuli over time and space. In typical experiments with naturalistic or flickering spatiotemporal stimuli, RFs are very high-dimensional, due to the large number of coefficients needed to specify an integration profile across time and space. Estimating these coefficients from small amounts of data poses a variety of challenging statistical and computational problems. Here we address these challenges by developing Bayesian reduced rank regression methods for RF estimation. This corresponds to modeling the RF as a sum of several space-time separable (i.e., rank-1) filters, which proves accurate even for neurons with strongly oriented space-time RFs. This approach substantially reduces the number of parameters needed to specify the RF, from 1K-100K down to mere 100s in the examples we consider, and confers substantial benefits in statistical power and computational efficiency. In particular, we introduce a novel prior over low-rank RFs using the restriction of a matrix normal prior to the manifold of low-rank matrices. We then use a localized'' prior over row and column covariances to obtain sparse, smooth, localized estimates of the spatial and temporal RF components. We develop two methods for inference in the resulting hierarchical model: (1) a fully Bayesian method using blocked-Gibbs sampling; and (2) a fast, approximate method that employs alternating coordinate ascent of the conditional marginal likelihood. We develop these methods under Gaussian and Poisson noise models, and show that low-rank estimates substantially outperform full rank estimates in accuracy and speed using neural data from retina and V1."


Policy Shaping: Integrating Human Feedback with Reinforcement Learning

Neural Information Processing Systems

A long term goal of Interactive Reinforcement Learning is to incorporate non-expert human feedback to solve complex tasks. State-of-the-art methods have approached this problem by mapping human information to reward and value signals to indicate preferences and then iterating over them to compute the necessary control policy. In this paper we argue for an alternate, more effective characterization of human feedback: Policy Shaping. We introduce Advise, a Bayesian approach that attempts to maximize the information gained from human feedback by utilizing it as direct labels on the policy. We compare Advise to state-of-the-art approaches and highlight scenarios where it outperforms them and importantly is robust to infrequent and inconsistent human feedback.


Probabilistic Movement Primitives

Neural Information Processing Systems

Movement Primitives (MP) are a well-established approach for representing modular and re-usable robot movement generators. Many state-of-the-art robot learning successes are based MPs, due to their compact representation of the inherently continuous and high dimensional robot movements. A major goal in robot learning is to combine multiple MPs as building blocks in a modular control architecture to solve complex tasks. To this effect, a MP representation has to allow for blending between motions, adapting to altered task variables, and co-activating multiple MPs in parallel. We present a probabilistic formulation of the MP concept that maintains a distribution over trajectories. Our probabilistic approach allows for the derivation of new operations which are essential for implementing all aforementioned properties in one framework. In order to use such a trajectory distribution for robot movement control, we analytically derive a stochastic feedback controller which reproduces the given trajectory distribution. We evaluate and compare our approach to existing methods on several simulated as well as real robot scenarios.


Restricting exchangeable nonparametric distributions

Neural Information Processing Systems

Distributions over matrices with exchangeable rows and infinitely many columns are useful in constructing nonparametric latent variable models. However, the distribution impliedby such models over the number of features exhibited by each data point may be poorly-suited for many modeling tasks. In this paper, we propose aclass of exchangeable nonparametric priors obtained by restricting the domain ofexisting models. Such models allow us to specify the distribution over the number of features per data point, and can achieve better performance on data sets where the number of features is not well-modeled by the original distribution.


Flexible sampling of discrete data correlations without the marginal distributions

Neural Information Processing Systems

Learning the joint dependence of discrete variables is a fundamental problem in machine learning, with many applications including prediction, clustering and dimensionality reduction. More recently, the framework of copula modeling has gained popularity due to its modular parametrization of joint distributions. Among other properties, copulas provide a recipe for combining flexible models for univariate marginal distributions with parametric families suitable for potentially high dimensional dependence structures. More radically, the extended rank likelihood approach of Hoff (2007) bypasses learning marginal models completely when such information is ancillary to the learning task at hand as in, e.g., standard dimensionality reduction problems or copula parameter estimation. The main idea is to represent data by their observable rank statistics, ignoring any other information from the marginals. Inference is typically done in a Bayesian framework with Gaussian copulas, and it is complicated by the fact this implies sampling within a space where the number of constraints increase quadratically with the number of data points. The result is slow mixing when using off-the-shelf Gibbs sampling. We present an efficient algorithm based on recent advances on constrained Hamiltonian Markov chain Monte Carlo that is simple to implement and does not require paying for a quadratic cost in sample size.


Integrated Non-Factorized Variational Inference

Neural Information Processing Systems

We present a non-factorized variational method for full posterior inference in Bayesian hierarchical models, with the goal of capturing the posterior variable dependencies via efficient and possibly parallel computation. Our approach unifies the integrated nested Laplace approximation (INLA) under the variational framework. The proposed method is applicable in more challenging scenarios than typically assumed by INLA, such as Bayesian Lasso, which is characterized by the non-differentiability of the $\ell_{1}$ norm arising from independent Laplace priors. We derive an upper bound for the Kullback-Leibler divergence, which yields a fast closed-form solution via decoupled optimization. Our method is a reliable analytic alternative to Markov chain Monte Carlo (MCMC), and it results in a tighter evidence lower bound than that of mean-field variational Bayes (VB) method.


Scalable Inference for Logistic-Normal Topic Models

Neural Information Processing Systems

Logistic-normal topic models can effectively discover correlation structures among latent topics. However, their inference remains a challenge because of the non-conjugacy between the logistic-normal prior and multinomial topic mixing proportions. Existing algorithms either make restricting mean-field assumptions or are not scalable to large-scale applications. This paper presents a partially collapsed Gibbs sampling algorithm that approaches the provably correct distribution by exploring the ideas of data augmentation. To improve time efficiency, we further present a parallel implementation that can deal with large-scale applications and learn the correlation structures of thousands of topics from millions of documents. Extensive empirical results demonstrate the promise.