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 Bayesian Inference


Relevance Topic Model for Unstructured Social Group Activity Recognition

Neural Information Processing Systems

Unstructured social group activity recognition in web videos is a challenging task due to 1) the semantic gap between class labels and low-level visual features and 2) the lack of labeled training data. To tackle this problem, we propose a "relevance topic model" for jointly learning meaningful mid-level representations upon bag-of-words (BoW) video representations and a classifier with sparse weights. In our approach, sparse Bayesian learning is incorporated into an undirected topic model (i.e., Replicated Softmax) to discover topics which are relevant to video classes and suitable for prediction. Rectified linear units are utilized to increase the expressive power of topics so as to explain better video data containing complex contents and make variational inference tractable for the proposed model. An efficient variational EM algorithm is presented for model parameter estimation and inference. Experimental results on the Unstructured Social Activity Attribute dataset show that our model achieves state of the art performance and outperforms other supervised topic model in terms of classification accuracy, particularly in the case of a very small number of labeled training videos.


Spectral methods for neural characterization using generalized quadratic models

Neural Information Processing Systems

We describe a set of fast, tractable methods for characterizing neural responses to high-dimensional sensory stimuli using a model we refer to as the generalized quadratic model (GQM). The GQM consists of a low-rank quadratic form followed by a point nonlinearity and exponential-family noise. The quadratic form characterizes the neuron's stimulus selectivity in terms of a set linear receptive fields followed by a quadratic combination rule, and the invertible nonlinearity maps this output to the desired response range. Special cases of the GQM include the 2nd-order Volterra model (Marmarelis and Marmarelis 1978, Koh and Powers 1985) and the elliptical Linear-Nonlinear-Poisson model (Park and Pillow 2011). Here we show that for canonical form" GQMs, spectral decomposition of the first two response-weighted moments yields approximate maximum-likelihood estimators via a quantity called the expected log-likelihood. The resulting theory generalizes moment-based estimators such as the spike-triggered covariance, and, in the Gaussian noise case, provides closed-form estimators under a large class of non-Gaussian stimulus distributions. We show that these estimators are fast and provide highly accurate estimates with far lower computational cost than full maximum likelihood. Moreover, the GQM provides a natural framework for combining multi-dimensional stimulus sensitivity and spike-history dependencies within a single model. We show applications to both analog and spiking data using intracellular recordings of V1 membrane potential and extracellular recordings of retinal spike trains."


Bayesian Hierarchical Community Discovery

Neural Information Processing Systems

We propose an efficient Bayesian nonparametric model for discovering hierarchical community structure in social networks. Our model is a tree-structured mixture of potentially exponentially many stochastic blockmodels. We describe a family of greedy agglomerative model selection algorithms whose worst case scales quadratically in the number of vertices of the network, but independent of the number of communities. Our algorithms are two orders of magnitude faster than the infinite relational model, achieving comparable or better accuracy.


Learning Feature Selection Dependencies in Multi-task Learning

Neural Information Processing Systems

A probabilistic model based on the horseshoe prior is proposed for learning dependencies in the process of identifying relevant features for prediction. Exact inference is intractable in this model. However, expectation propagation offers an approximate alternative. Because the process of estimating feature selection dependencies may suffer from over-fitting in the model proposed, additional data from a multi-task learning scenario are considered for induction. The same model can be used in this setting with few modifications. Furthermore, the assumptions made are less restrictive than in other multi-task methods: The different tasks must share feature selection dependencies, but can have different relevant features and model coefficients. Experiments with real and synthetic data show that this model performs better than other multi-task alternatives from the literature. The experiments also show that the model is able to induce suitable feature selection dependencies for the problems considered, only from the training data.


Visual Concept Learning: Combining Machine Vision and Bayesian Generalization on Concept Hierarchies

Neural Information Processing Systems

Learning a visual concept from a small number of positive examples is a significant challenge for machine learning algorithms. Current methods typically fail to find the appropriate level of generalization in a concept hierarchy for a given set of visual examples. Recent work in cognitive science on Bayesian models of generalization addresses this challenge, but prior results assumed that objects were perfectly recognized. We present an algorithm for learning visual concepts directly from images, using probabilistic predictions generated by visual classifiers as the input to a Bayesian generalization model. As no existing challenge data tests this paradigm, we collect and make available a new, large-scale dataset for visual concept learning using the ImageNet hierarchy as the source of possible concepts, with human annotators to provide ground truth labels as to whether a new image is an instance of each concept using a paradigm similar to that used in experiments studying word learning in children. We compare the performance of our system to several baseline algorithms, and show a significant advantage results from combining visual classifiers with the ability to identify an appropriate level of abstraction using Bayesian generalization.


Probabilistic Low-Rank Matrix Completion with Adaptive Spectral Regularization Algorithms

Neural Information Processing Systems

We propose a novel class of algorithms for low rank matrix completion. Our approach builds on novel penalty functions on the singular values of the low rank matrix. By exploiting a mixture model representation of this penalty, we show that a suitably chosen set of latent variables enables to derive an Expectation-Maximization algorithm to obtain a Maximum A Posteriori estimate of the completed low rank matrix. The resulting algorithm is an iterative soft-thresholded algorithm which iteratively adapts the shrinkage coefficients associated to the singular values. The algorithm is simple to implement and can scale to large matrices. We provide numerical comparisons between our approach and recent alternatives showing the interest of the proposed approach for low rank matrix completion.


Real-Time Inference for a Gamma Process Model of Neural Spiking

Neural Information Processing Systems

With simultaneous measurements from ever increasing populations of neurons, there is a growing need for sophisticated tools to recover signals from individual neurons. In electrophysiology experiments, this classically proceeds in a two-step process: (i) threshold the waveforms to detect putative spikes and (ii) cluster the waveforms into single units (neurons). We extend previous Bayesian nonparamet- ric models of neural spiking to jointly detect and cluster neurons using a Gamma process model. Importantly, we develop an online approximate inference scheme enabling real-time analysis, with performance exceeding the previous state-of-the- art. Via exploratory data analysis—using data with partial ground truth as well as two novel data sets—we find several features of our model collectively contribute to our improved performance including: (i) accounting for colored noise, (ii) de- tecting overlapping spikes, (iii) tracking waveform dynamics, and (iv) using mul- tiple channels. We hope to enable novel experiments simultaneously measuring many thousands of neurons and possibly adapting stimuli dynamically to probe ever deeper into the mysteries of the brain.


Bayesian Inference and Learning in Gaussian Process State-Space Models with Particle MCMC

Neural Information Processing Systems

State-space models are successfully used in many areas of science, engineering and economics to model time series and dynamical systems. We present a fully Bayesian approach to inference and learning in nonlinear nonparametric state-space models. We place a Gaussian process prior over the transition dynamics, resulting in a flexible model able to capture complex dynamical phenomena. However, to enable efficient inference, we marginalize over the dynamics of the model and instead infer directly the joint smoothing distribution through the use of specially tailored Particle Markov Chain Monte Carlo samplers. Once an approximation of the smoothing distribution is computed, the state transition predictive distribution can be formulated analytically. We make use of sparse Gaussian process models to greatly reduce the computational complexity of the approach.


Stochastic Gradient Riemannian Langevin Dynamics on the Probability Simplex

Neural Information Processing Systems

In this paper we investigate the use of Langevin Monte Carlo methods on the probability simplex and propose a new method, Stochastic gradient Riemannian Langevin dynamics, which is simple to implement and can be applied to large scale data. We apply this method to latent Dirichlet allocation in an online minibatch setting,and demonstrate that it achieves substantial performance improvements overthe state of the art online variational Bayesian methods.


Learning Stochastic Inverses

Neural Information Processing Systems

We describe a class of algorithms for amortized inference in Bayesian networks. In this setting, we invest computation upfront to support rapid online inference for a wide range of queries. Our approach is based on learning an inverse factorization of a model's joint distribution: a factorization that turns observations into root nodes. Our algorithms accumulate information to estimate the local conditional distributions that constitute such a factorization. These stochastic inverses can be used to invert each of the computation steps leading to an observation, sampling backwards in order to quickly find a likely explanation. We show that estimated inverses converge asymptotically in number of (prior or posterior) training samples. To make use of inverses before convergence, we describe the Inverse MCMC algorithm, which uses stochastic inverses to make block proposals for a Metropolis-Hastings sampler. We explore the efficiency of this sampler for a variety of parameter regimes and Bayes nets.