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 Bayesian Inference


Exploring Algorithmic Limits of Matrix Rank Minimization under Affine Constraints

arXiv.org Machine Learning

Many applications require recovering a matrix of minimal rank within an affine constraint set, with matrix completion a notable special case. Because the problem is NP-hard in general, it is common to replace the matrix rank with the nuclear norm, which acts as a convenient convex surrogate. While elegant theoretical conditions elucidate when this replacement is likely to be successful, they are highly restrictive and convex algorithms fail when the ambient rank is too high or when the constraint set is poorly structured. Non-convex alternatives fare somewhat better when carefully tuned; however, convergence to locally optimal solutions remains a continuing source of failure. Against this backdrop we derive a deceptively simple and parameter-free probabilistic PCA-like algorithm that is capable, over a wide battery of empirical tests, of successful recovery even at the theoretical limit where the number of measurements equal the degrees of freedom in the unknown low-rank matrix. Somewhat surprisingly, this is possible even when the affine constraint set is highly ill-conditioned. While proving general recovery guarantees remains evasive for non-convex algorithms, Bayesian-inspired or otherwise, we nonetheless show conditions whereby the underlying cost function has a unique stationary point located at the global optimum; no existing cost function we are aware of satisfies this same property. We conclude with a simple computer vision application involving image rectification and a standard collaborative filtering benchmark.


On the Equivalence of Factorized Information Criterion Regularization and the Chinese Restaurant Process Prior

arXiv.org Machine Learning

Factorized Information Criterion (FIC) is a recently developed information criterion, based on which a novel model selection methodology, namely Factorized Asymptotic Bayesian (FAB) Inference, has been developed and successfully applied to various hierarchical Bayesian models. The Dirichlet Process (DP) prior, and one of its well known representations, the Chinese Restaurant Process (CRP), derive another line of model selection methods. FIC can be viewed as a prior distribution over the latent variable configurations. Under this view, we prove that when the parameter dimensionality $D_{c}=2$, FIC is equivalent to CRP. We argue that when $D_{c}>2$, FIC avoids an inherent problem of DP/CRP, i.e. the data likelihood will dominate the impact of the prior, and thus the model selection capability will weaken as $D_{c}$ increases. However, FIC overestimates the data likelihood. As a result, FIC may be overly biased towards models with less components. We propose a natural generalization of FIC, which finds a middle ground between CRP and FIC, and may yield more accurate model selection results than FIC.


Divide-and-Conquer with Sequential Monte Carlo

arXiv.org Machine Learning

We propose a novel class of Sequential Monte Carlo (SMC) algorithms, appropriate for inference in probabilistic graphical models. This class of algorithms adopts a divide-and-conquer approach based upon an auxiliary tree-structured decomposition of the model of interest, turning the overall inferential task into a collection of recursively solved sub-problems. The proposed method is applicable to a broad class of probabilistic graphical models, including models with loops. Unlike a standard SMC sampler, the proposed Divide-and-Conquer SMC employs multiple independent populations of weighted particles, which are resampled, merged, and propagated as the method progresses. We illustrate empirically that this approach can outperform standard methods in terms of the accuracy of the posterior expectation and marginal likelihood approximations. Divide-and-Conquer SMC also opens up novel parallel implementation options and the possibility of concentrating the computational effort on the most challenging sub-problems. We demonstrate its performance on a Markov random field and on a hierarchical logistic regression problem.


Probabilistic Inference Techniques for Scalable Multiagent Decision Making

Journal of Artificial Intelligence Research

Decentralized POMDPs provide an expressive framework for multiagent sequential decision making. However, the complexity of these models---NEXP-Complete even for two agents---has limited their scalability. We present a promising new class of approximation algorithms by developing novel connections between multiagent planning and machine learning. We show how the multiagent planning problem can be reformulated as inference in a mixture of dynamic Bayesian networks (DBNs). This planning-as-inference approach paves the way for the application of efficient inference techniques in DBNs to multiagent decision making. To further improve scalability, we identify certain conditions that are sufficient to extend the approach to multiagent systems with dozens of agents. Specifically, we show that the necessary inference within the expectation-maximization framework can be decomposed into processes that often involve a small subset of agents, thereby facilitating scalability. We further show that a number of existing multiagent planning models satisfy these conditions. Experiments on large planning benchmarks confirm the benefits of our approach in terms of runtime and scalability with respect to existing techniques.


Non-Normal Mixtures of Experts

arXiv.org Machine Learning

Mixture of Experts (MoE) is a popular framework for modeling heterogeneity in data for regression, classification and clustering. For continuous data which we consider here in the context of regression and cluster analysis, MoE usually use normal experts, that is, expert components following the Gaussian distribution. However, for a set of data containing a group or groups of observations with asymmetric behavior, heavy tails or atypical observations, the use of normal experts may be unsuitable and can unduly affect the fit of the MoE model. In this paper, we introduce new non-normal mixture of experts (NNMoE) which can deal with these issues regarding possibly skewed, heavy-tailed data and with outliers. The proposed models are the skew-normal MoE and the robust $t$ MoE and skew $t$ MoE, respectively named SNMoE, TMoE and STMoE. We develop dedicated expectation-maximization (EM) and expectation conditional maximization (ECM) algorithms to estimate the parameters of the proposed models by monotonically maximizing the observed data log-likelihood. We describe how the presented models can be used in prediction and in model-based clustering of regression data. Numerical experiments carried out on simulated data show the effectiveness and the robustness of the proposed models in terms modeling non-linear regression functions as well as in model-based clustering. Then, to show their usefulness for practical applications, the proposed models are applied to the real-world data of tone perception for musical data analysis, and the one of temperature anomalies for the analysis of climate change data.


Nonparametric Estimation of Band-limited Probability Density Functions

arXiv.org Machine Learning

In this paper, a nonparametric maximum likelihood (ML) estimator for band-limited (BL) probability density functions (pdfs) is proposed. The BLML estimator is consistent and computationally efficient. To compute the BLML estimator, three approximate algorithms are presented: a binary quadratic programming (BQP) algorithm for medium scale problems, a Trivial algorithm for large-scale problems that yields a consistent estimate if the underlying pdf is strictly positive and BL, and a fast implementation of the Trivial algorithm that exploits the band-limited assumption and the Nyquist sampling theorem ("BLMLQuick"). All three BLML estimators outperform kernel density estimation (KDE) algorithms (adaptive and higher order KDEs) with respect to the mean integrated squared error for data generated from both BL and infinite-band pdfs. Further, the BLMLQuick estimate is remarkably faster than the KD algorithms. Finally, the BLML method is applied to estimate the conditional intensity function of a neuronal spike train (point process) recorded from a rat's entorhinal cortex grid cell, for which it outperforms state-of-the-art estimators used in neuroscience.


Modelling of directional data using Kent distributions

arXiv.org Machine Learning

The modelling of data on a spherical surface requires the consideration of directional probability distributions. To model asymmetrically distributed data on a three-dimensional sphere, Kent distributions are often used. The moment estimates of the parameters are typically used in modelling tasks involving Kent distributions. However, these lack a rigorous statistical treatment. The focus of the paper is to introduce a Bayesian estimation of the parameters of the Kent distribution which has not been carried out in the literature, partly because of its complex mathematical form. We employ the Bayesian information-theoretic paradigm of Minimum Message Length (MML) to bridge this gap and derive reliable estimators. The inferred parameters are subsequently used in mixture modelling of Kent distributions. The problem of inferring the suitable number of mixture components is also addressed using the MML criterion. We demonstrate the superior performance of the derived MML-based parameter estimates against the traditional estimators. We apply the MML principle to infer mixtures of Kent distributions to model empirical data corresponding to protein conformations. We demonstrate the effectiveness of Kent models to act as improved descriptors of protein structural data as compared to commonly used von Mises-Fisher distributions.


An Empirical Study of Stochastic Variational Algorithms for the Beta Bernoulli Process

arXiv.org Machine Learning

Stochastic variational inference (SVI) is emerging as the most promising candidate for scaling inference in Bayesian probabilistic models to large datasets. However, the performance of these methods has been assessed primarily in the context of Bayesian topic models, particularly latent Dirichlet allocation (LDA). Deriving several new algorithms, and using synthetic, image and genomic datasets, we investigate whether the understanding gleaned from LDA applies in the setting of sparse latent factor models, specifically beta process factor analysis (BPFA). We demonstrate that the big picture is consistent: using Gibbs sampling within SVI to maintain certain posterior dependencies is extremely effective. However, we find that different posterior dependencies are important in BPFA relative to LDA. Particularly, approximations able to model intra-local variable dependence perform best.


Objective Variables for Probabilistic Revenue Maximization in Second-Price Auctions with Reserve

arXiv.org Machine Learning

Many online companies sell advertisement space in second-price auctions with reserve. In this paper, we develop a probabilistic method to learn a profitable strategy to set the reserve price. We use historical auction data with features to fit a predictor of the best reserve price. This problem is delicate - the structure of the auction is such that a reserve price set too high is much worse than a reserve price set too low. To address this we develop objective variables, a new framework for combining probabilistic modeling with optimal decision-making. Objective variables are "hallucinated observations" that transform the revenue maximization task into a regularized maximum likelihood estimation problem, which we solve with an EM algorithm. This framework enables a variety of prediction mechanisms to set the reserve price. As examples, we study objective variable methods with regression, kernelized regression, and neural networks on simulated and real data. Our methods outperform previous approaches both in terms of scalability and profit.


An objective prior that unifies objective Bayes and information-based inference

arXiv.org Machine Learning

There are three principle paradigms of statistical inference: (i) Bayesian, (ii) information-based and (iii) frequentist inference. We describe an objective prior (the weighting or $w$-prior) which unifies objective Bayes and information-based inference. The $w$-prior is chosen to make the marginal probability an unbiased estimator of the predictive performance of the model. This definition has several other natural interpretations. From the perspective of the information content of the prior, the $w$-prior is both uniformly and maximally uninformative. The $w$-prior can also be understood to result in a uniform density of distinguishable models in parameter space. Finally we demonstrate the the $w$-prior is equivalent to the Akaike Information Criterion (AIC) for regular models in the asymptotic limit. The $w$-prior appears to be generically applicable to statistical inference and is free of {\it ad hoc} regularization. The mechanism for suppressing complexity is analogous to AIC: model complexity reduces model predictivity. We expect this new objective-Bayes approach to inference to be widely-applicable to machine-learning problems including singular models.