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 Bayesian Inference


Probabilistic Group Testing under Sum Observations: A Parallelizable 2-Approximation for Entropy Loss

arXiv.org Machine Learning

We consider the problem of group testing with sum observations and noiseless answers, in which we aim to locate multiple objects by querying the number of objects in each of a sequence of chosen sets. We study a probabilistic setting with entropy loss, in which we assume a joint Bayesian prior density on the locations of the objects and seek to choose the sets queried to minimize the expected entropy of the Bayesian posterior distribution after a fixed number of questions. We present a new non-adaptive policy, called the dyadic policy, show it is optimal among non-adaptive policies, and is within a factor of two of optimal among adaptive policies. This policy is quick to compute, its nonadaptive nature makes it easy to parallelize, and our bounds show it performs well even when compared with adaptive policies. We also study an adaptive greedy policy, which maximizes the one-step expected reduction in entropy, and show that it performs at least as well as the dyadic policy, offering greater query efficiency but reduced parallelism. Numerical experiments demonstrate that both procedures outperform a divide-and-conquer benchmark policy from the literature, called sequential bifurcation, and show how these procedures may be applied in a stylized computer vision problem.


Bayesian Conditional Density Filtering

arXiv.org Machine Learning

We propose a Conditional Density Filtering (C-DF) algorithm for efficient online Bayesian inference. C-DF adapts MCMC sampling to the online setting, sampling from approximations to conditional posterior distributions obtained by propagating surrogate conditional sufficient statistics (a function of data and parameter estimates) as new data arrive. These quantities eliminate the need to store or process the entire dataset simultaneously and offer a number of desirable features. Often, these include a reduction in memory requirements and runtime and improved mixing, along with state-of-the-art parameter inference and prediction. These improvements are demonstrated through several illustrative examples including an application to high dimensional compressed regression. Finally, we show that C-DF samples converge to the target posterior distribution asymptotically as sampling proceeds and more data arrives.


Decadal climate predictions using sequential learning algorithms

arXiv.org Machine Learning

Ensembles of climate models are commonly used to improve climate predictions and assess the uncertainties associated with them. Weighting the models according to their performances holds the promise of further improving their predictions. Here, we use an ensemble of decadal climate predictions to demonstrate the ability of sequential learning algorithms (SLAs) to reduce the forecast errors and reduce the uncertainties. Three different SLAs are considered, and their performances are compared with those of an equally weighted ensemble, a linear regression and the climatology. Predictions of four different variables--the surface temperature, the zonal and meridional wind, and pressure--are considered. The spatial distributions of the performances are presented, and the statistical significance of the improvements achieved by the SLAs is tested. Based on the performances of the SLAs, we propose one to be highly suitable for the improvement of decadal climate predictions.


Sparse Fisher's Linear Discriminant Analysis for Partially Labeled Data

arXiv.org Machine Learning

Classification is an important tool with many useful applications. Among the many classification methods, Fisher's Linear Discriminant Analysis (LDA) is a traditional model-based approach which makes use of the covariance information. However, in the high-dimensional, low-sample size setting, LDA cannot be directly deployed because the sample covariance is not invertible. While there are modern methods designed to deal with high-dimensional data, they may not fully use the covariance information as LDA does. Hence in some situations, it is still desirable to use a model-based method such as LDA for classification. This article exploits the potential of LDA in more complicated data settings. In many real applications, it is costly to manually place labels on observations; hence it is often that only a small portion of labeled data is available while a large number of observations are left without a label. It is a great challenge to obtain good classification performance through the labeled data alone, especially when the dimension is greater than the size of the labeled data. In order to overcome this issue, we propose a semi-supervised sparse LDA classifier to take advantage of the seemingly useless unlabeled data. They provide additional information which helps to boost the classification performance in some situations. A direct estimation method is used to reconstruct LDA and achieve the sparsity; meanwhile we employ the difference-convex algorithm to handle the non-convex loss function associated with the unlabeled data. Theoretical properties of the proposed classifier are studied. Our simulated examples help to understand when and how the information extracted from the unlabeled data can be useful. A real data example further illustrates the usefulness of the proposed method.


The Advantage of Cross Entropy over Entropy in Iterative Information Gathering

arXiv.org Machine Learning

Gathering the most information by picking the least amount of data is a common task in experimental design or when exploring an unknown environment in reinforcement learning and robotics. A widely used measure for quantifying the information contained in some distribution of interest is its entropy. Greedily minimizing the expected entropy is therefore a standard method for choosing samples in order to gain strong beliefs about the underlying random variables. We show that this approach is prone to temporally getting stuck in local optima corresponding to wrongly biased beliefs. We suggest instead maximizing the expected cross entropy between old and new belief, which aims at challenging refutable beliefs and thereby avoids these local optima. We show that both criteria are closely related and that their difference can be traced back to the asymmetry of the Kullback-Leibler divergence. In illustrative examples as well as simulated and real-world experiments we demonstrate the advantage of cross entropy over simple entropy for practical applications.


Dynamic Poisson Factorization

arXiv.org Machine Learning

Models for recommender systems use latent factors to explain the preferences and behaviors of users with respect to a set of items (e.g., movies, books, academic papers). Typically, the latent factors are assumed to be static and, given these factors, the observed preferences and behaviors of users are assumed to be generated without order. These assumptions limit the explorative and predictive capabilities of such models, since users' interests and item popularity may evolve over time. To address this, we propose dPF, a dynamic matrix factorization model based on the recent Poisson factorization model for recommendations. dPF models the time evolving latent factors with a Kalman filter and the actions with Poisson distributions. We derive a scalable variational inference algorithm to infer the latent factors. Finally, we demonstrate dPF on 10 years of user click data from arXiv.org, one of the largest repository of scientific papers and a formidable source of information about the behavior of scientists. Empirically we show performance improvement over both static and, more recently proposed, dynamic recommendation models. We also provide a thorough exploration of the inferred posteriors over the latent variables.


Learning the Structure for Structured Sparsity

arXiv.org Machine Learning

Structured sparsity has recently emerged in statistics, machine learning and signal processing as a promising paradigm for learning in high-dimensional settings. All existing methods for learning under the assumption of structured sparsity rely on prior knowledge on how to weight (or how to penalize) individual subsets of variables during the subset selection process, which is not available in general. Inferring group weights from data is a key open research problem in structured sparsity.In this paper, we propose a Bayesian approach to the problem of group weight learning. We model the group weights as hyperparameters of heavy-tailed priors on groups of variables and derive an approximate inference scheme to infer these hyperparameters. We empirically show that we are able to recover the model hyperparameters when the data are generated from the model, and we demonstrate the utility of learning weights in synthetic and real denoising problems.


Learning without Recall by Random Walks on Directed Graphs

arXiv.org Machine Learning

We consider a network of agents that aim to learn some unknown state of the world using private observations and exchange of beliefs. At each time, agents observe private signals generated based on the true unknown state. Each agent might not be able to distinguish the true state based only on her private observations. This occurs when some other states are observationally equivalent to the true state from the agent's perspective. To overcome this shortcoming, agents must communicate with each other to benefit from local observations. We propose a model where each agent selects one of her neighbors randomly at each time. Then, she refines her opinion using her private signal and the prior of that particular neighbor. The proposed rule can be thought of as a Bayesian agent who cannot recall the priors based on which other agents make inferences. This learning without recall approach preserves some aspects of the Bayesian inference while being computationally tractable. By establishing a correspondence with a random walk on the network graph, we prove that under the described protocol, agents learn the truth exponentially fast in the almost sure sense. The asymptotic rate is expressed as the sum of the relative entropies between the signal structures of every agent weighted by the stationary distribution of the random walk.


Adaptive Low-Complexity Sequential Inference for Dirichlet Process Mixture Models

arXiv.org Machine Learning

We develop a sequential low-complexity inference procedure for Dirichlet process mixtures of Gaussians for online clustering and parameter estimation when the number of clusters are unknown a-priori. We present an easily computable, closed form parametric expression for the conditional likelihood, in which hyperparameters are recursively updated as a function of the streaming data assuming conjugate priors. Motivated by large-sample asymptotics, we propose a novel adaptive low-complexity design for the Dirichlet process concentration parameter and show that the number of classes grow at most at a logarithmic rate. We further prove that in the large-sample limit, the conditional likelihood and data predictive distribution become asymptotically Gaussian. We demonstrate through experiments on synthetic and real data sets that our approach is superior to other online state-of-the-art methods.


Newton-based maximum likelihood estimation in nonlinear state space models

arXiv.org Machine Learning

Maximum likelihood (ML) estimation using Newton's method in nonlinear state space models (SSMs) is a challenging problem due to the analytical intractability of the log-likelihood and its gradient and Hessian. We estimate the gradient and Hessian using Fisher's identity in combination with a smoothing algorithm. We explore two approximations of the log-likelihood and of the solution of the smoothing problem. The first is a linearization approximation which is computationally cheap, but the accuracy typically varies between models. The second is a sampling approximation which is asymptotically valid for any SSM but is more computationally costly. We demonstrate our approach for ML parameter estimation on simulated data from two different SSMs with encouraging results.