So you know the Bayes rule. How does it relate to machine learning? It can be quite difficult to grasp how the puzzle pieces fit together - we know it took us a while. This article is an introduction we wish we had back then. While we have some grasp on the matter, we're not experts, so the following might contain inaccuracies or even outright errors.

Regularized least-squares approaches have been successfully applied to linear system identification. Recent approaches use quadratic penalty terms on the unknown impulse response defined by stable spline kernels, which control model space complexity by leveraging regularity and bounded-input bounded-output stability. This paper extends linear system identification to a wide class of nonsmooth stable spline estimators, where regularization functionals and data misfits can be selected from a rich set of piecewise linear quadratic penalties. This class encompasses the 1-norm, huber, and vapnik, in addition to the least-squares penalty, and the approach allows linear inequality constraints on the unknown impulse response. We develop a customized interior point solver for the entire class of proposed formulations. By representing penalties through their conjugates, we allow a simple interface that enables the user to specify any piecewise linear quadratic penalty for misfit and regularizer, together with inequality constraints on the response. The solver is locally quadratically convergent, with O(n2(m+n)) arithmetic operations per iteration, for n impulse response coefficients and m output measurements. In the system identification context, where n << m, IPsolve is competitive with available alternatives, illustrated by a comparison with TFOCS and libSVM. The modeling framework is illustrated with a range of numerical experiments, featuring robust formulations for contaminated data, relaxation systems, and nonnegativity and unimodality constraints on the impulse response. Incorporating constraints yields significant improvements in system identification. The solver used to obtain the results is distributed via an open source code repository.

In previous discussions of Bayesian Inference we introduced Bayesian Statistics and considered how to infer a binomial proportion using the concept of conjugate priors. We discussed the fact that not all models can make use of conjugate priors and thus calculation of the posterior distribution would need to be approximated numerically. In this article we introduce the main family of algorithms, known collectively as Markov Chain Monte Carlo (MCMC), that allow us to approximate the posterior distribution as calculated by Bayes' Theorem. In particular, we consider the Metropolis Algorithm, which is easily stated and relatively straightforward to understand. It serves as a useful starting point when learning about MCMC before delving into more sophisticated algorithms such as Metropolis-Hastings, Gibbs Samplers and Hamiltonian Monte Carlo. Once we have described how MCMC works, we will carry it out using the open-source PyMC3 library, which takes care of many of the underlying implementation details, allowing us to concentrate on Bayesian modelling.

All the regression theory developed by statisticians over the last 200 years (related to the general linear model) is useless. Regression can be performed as accurately without statistical models, including the computation of confidence intervals (for estimates, predicted values or regression parameters). The non-statistical approach is also more robust than theory described in all statistics textbooks and taught in all statistical courses. It does not require Map-Reduce when data is really big, nor any matrix inversion, maximum likelihood estimation, or mathematical optimization (Newton algorithm). It is indeed incredibly simple, robust, easy to interpret, and easy to code (no statistical libraries required).

This practical introduction is geared towards scientists who wish to employ Bayesian networks for applied research using the BayesiaLab software platform. Through numerous examples, this book illustrates how implementing Bayesian networks involves concepts from many disciplines, including computer science, probability theory, information theory, machine learning, and statistics. Each chapter explores a real-world problem domain, exploring aspects of Bayesian networks and simultaneously introducing functions of BayesiaLab. The book can serve as a self-study guide for learners and as a reference manual for advanced practitioners.

Most Relevant Explanation (MRE) is an inference task in Bayesian networks that finds the most relevant partial instantiation of target variables as an explanation for given evidence by maximizing the Generalized Bayes Factor (GBF). No exact MRE algorithm has been developed previously except exhaustive search. This paper fills the void by introducing two Breadth-First Branch-and-Bound (BFBnB) algorithms for solving MRE based on novel upper bounds of GBF. One upper bound is created by decomposing the computation of GBF using a target blanket decomposition of evidence variables. The other upper bound improves the first bound in two ways. One is to split the target blankets that are too large by converting auxiliary nodes into pseudo-targets so as to scale to large problems. The other is to perform summations instead of maximizations on some of the target variables in each target blanket. Our empirical evaluations show that the proposed BFBnB algorithms make exact MRE inference tractable in Bayesian networks that could not be solved previously.

Datasets are growing not just in size but in complexity, creating a demand for rich models and quantification of uncertainty. Bayesian methods are an excellent fit for this demand, but scaling Bayesian inference is a challenge. In response to this challenge, there has been considerable recent work based on varying assumptions about model structure, underlying computational resources, and the importance of asymptotic correctness. As a result, there is a zoo of ideas with few clear overarching principles. In this paper, we seek to identify unifying principles, patterns, and intuitions for scaling Bayesian inference. We review existing work on utilizing modern computing resources with both MCMC and variational approximation techniques. From this taxonomy of ideas, we characterize the general principles that have proven successful for designing scalable inference procedures and comment on the path forward.

Text clustering is a widely used techniques to automatically draw out patterns from a set of documents. This notion can be extended to customer segmentation in the digital marketing field. As one of its main core is to understand what drives visitors to come, leave and behave on site. One simple way to do this is by reviewing words that they used to arrive on site and what words they used ( what things they searched) once they're on your site. Another usage of text clustering is for document organization or indexing (tagging).

There are several reasons why everyone isn't using Bayesian methods for regression modeling. One reason is that Bayesian modeling requires more thought: you need pesky things like priors, and you can't assume that if a procedure runs without throwing an error that the answers are valid. A second reason is that MCMC sampling -- the bedrock of practical Bayesian modeling -- can be slow compared to closed-form or MLE procedures. A third reason is that existing Bayesian solutions have either been highly-specialized (and thus inflexible), or have required knowing how to use a generalized tool like BUGS, JAGS, or Stan. This third reason has recently been shattered in the R world by not one but two packages: brms and rstanarm.

Independent component analysis (ICA), as an approach to the blind source-separation (BSS) problem, has become the de-facto standard in many medical imaging settings. Despite successes and a large ongoing research effort, the limitation of ICA to square linear transformations have not been overcome, so that general INFOMAX is still far from being realized. As an alternative, we present feature analysis in medical imaging as a problem solved by Helmholtz machines, which include dimensionality reduction and reconstruction of the raw data under the same objective, and which recently have overcome major difficulties in inference and learning with deep and nonlinear configurations. We demonstrate one approach to training Helmholtz machines, variational auto-encoders (VAE), as a viable approach toward feature extraction with magnetic resonance imaging (MRI) data.