Bayesian Inference
Variational Fourier features for Gaussian processes
Hensman, James, Durrande, Nicolas, Solin, Arno
This work brings together two powerful concepts in Gaussian processes: the variational approach to sparse approximation and the spectral representation of Gaussian processes. This gives rise to an approximation that inherits the benefits of the variational approach but with the representational power and computational scalability of spectral representations. The work hinges on a key result that there exist spectral features related to a finite domain of the Gaussian process which exhibit almost-independent covariances. We derive these expressions for Matern kernels in one dimension, and generalize to more dimensions using kernels with specific structures. Under the assumption of additive Gaussian noise, our method requires only a single pass through the dataset, making for very fast and accurate computation. We fit a model to 4 million training points in just a few minutes on a standard laptop. With non-conjugate likelihoods, our MCMC scheme reduces the cost of computation from O(NM2) (for a sparse Gaussian process) to O(NM) per iteration, where N is the number of data and M is the number of features.
Efficient Multiple Incremental Computation for Kernel Ridge Regression with Bayesian Uncertainty Modeling
Chen, Bo-Wei, Abdullah, Nik Nailah Binti, Park, Sangoh
This study presents an efficient incremental/decremental approach for big streams based on Kernel Ridge Regression (KRR), a frequently used data analysis in cloud centers. To avoid reanalyzing the whole dataset whenever sensors receive new training data, typical incremental KRR used a single-instance mechanism for updating an existing system. However, this inevitably increased redundant computational time, not to mention applicability to big streams. To this end, the proposed mechanism supports incremental/decremental processing for both single and multiple samples (i.e., batch processing). A large scale of data can be divided into batches, processed by a machine, without sacrificing the accuracy. Moreover, incremental/decremental analyses in empirical and intrinsic space are also proposed in this study to handle different types of data either with a large number of samples or high feature dimensions, whereas typical methods focused only on one type. At the end of this study, we further the proposed mechanism to statistical Kernelized Bayesian Regression, so that uncertainty modeling with incremental/decremental computation becomes applicable. Experimental results showed that computational time was significantly reduced, better than the original nonincremental design and the typical single incremental method. Furthermore, the accuracy of the proposed method remained the same as the baselines. This implied that the system enhanced efficiency without sacrificing the accuracy. These findings proved that the proposed method was appropriate for variable streaming data analysis, thereby demonstrating the effectiveness of the proposed method.
A Tutorial on Canonical Correlation Methods
Uurtio, Viivi, Monteiro, Joรฃo M., Kandola, Jaz, Shawe-Taylor, John, Fernandez-Reyes, Delmiro, Rousu, Juho
Canonical correlation analysis is a family of multivariate statistical methods for the analysis of paired sets of variables. Since its proposition, canonical correlation analysis has for instance been extended to extract relations between two sets of variables when the sample size is insufficient in relation to the data dimensionality, when the relations have been considered to be non-linear, and when the dimensionality is too large for human interpretation. This tutorial explains the theory of canonical correlation analysis including its regularised, kernel, and sparse variants. Additionally, the deep and Bayesian CCA extensions are briefly reviewed. Together with the numerical examples, this overview provides a coherent compendium on the applicability of the variants of canonical correlation analysis. By bringing together techniques for solving the optimisation problems, evaluating the statistical significance and generalisability of the canonical correlation model, and interpreting the relations, we hope that this article can serve as a hands-on tool for applying canonical correlation methods in data analysis.
Flexible statistical inference for mechanistic models of neural dynamics
Lueckmann, Jan-Matthis, Goncalves, Pedro J., Bassetto, Giacomo, รcal, Kaan, Nonnenmacher, Marcel, Macke, Jakob H.
Mechanistic models of single-neuron dynamics have been extensively studied in computational neuroscience. However, identifying which models can quantitatively reproduce empirically measured data has been challenging. We propose to overcome this limitation by using likelihood-free inference approaches (also known as Approximate Bayesian Computation, ABC) to perform full Bayesian inference on single-neuron models. Our approach builds on recent advances in ABC by learning a neural network which maps features of the observed data to the posterior distribution over parameters. We learn a Bayesian mixture-density network approximating the posterior over multiple rounds of adaptively chosen simulations. Furthermore, we propose an efficient approach for handling missing features and parameter settings for which the simulator fails, as well as a strategy for automatically learning relevant features using recurrent neural networks. On synthetic data, our approach efficiently estimates posterior distributions and recovers ground-truth parameters. On in-vitro recordings of membrane voltages, we recover multivariate posteriors over biophysical parameters, which yield model-predicted voltage traces that accurately match empirical data. Our approach will enable neuroscientists to perform Bayesian inference on complex neuron models without having to design model-specific algorithms, closing the gap between mechanistic and statistical approaches to single-neuron modelling.
Simultaneous Block-Sparse Signal Recovery Using Pattern-Coupled Sparse Bayesian Learning
Xiao, Hang, Xing, Zhengli, Yang, Linxiao, Fang, Jun, Wu, Yanlun
In this paper, we consider the block-sparse signals recovery problem in the context of multiple measurement vectors (MMV) with common row sparsity patterns. We develop a new method for recovery of common row sparsity MMV signals, where a pattern-coupled hierarchical Gaussian prior model is introduced to characterize both the block-sparsity of the coefficients and the statistical dependency between neighboring coefficients of the common row sparsity MMV signals. Unlike many other methods, the proposed method is able to automatically capture the block sparse structure of the unknown signal. Our method is developed using an expectation-maximization (EM) framework. Simulation results show that our proposed method offers competitive performance in recovering block-sparse common row sparsity pattern MMV signals.
On Bayesian index policies for sequential resource allocation
This paper is about index policies for minimizing (frequentist) regret in a stochastic multi-armed bandit model, inspired by a Bayesian view on the problem. Our main contribution is to prove that the Bayes-UCB algorithm, which relies on quantiles of posterior distributions, is asymptotically optimal when the reward distributions belong to a one-dimensional exponential family, for a large class of prior distributions. We also show that the Bayesian literature gives new insight on what kind of exploration rates could be used in frequentist, UCB-type algorithms. Indeed, approximations of the Bayesian optimal solution or the Finite Horizon Gittins indices provide a justification for the kl-UCB+ and kl-UCB-H+ algorithms, whose asymptotic optimality is also established.
Hierarchical Implicit Models and Likelihood-Free Variational Inference
Tran, Dustin, Ranganath, Rajesh, Blei, David M.
Implicit probabilistic models are a flexible class of models defined by a simulation process for data. They form the basis for theories which encompass our understanding of the physical world. Despite this fundamental nature, the use of implicit models remains limited due to challenges in specifying complex latent structure in them, and in performing inferences in such models with large data sets. In this paper, we first introduce hierarchical implicit models (HIMs). HIMs combine the idea of implicit densities with hierarchical Bayesian modeling, thereby defining models via simulators of data with rich hidden structure. Next, we develop likelihood-free variational inference (LFVI), a scalable variational inference algorithm for HIMs. Key to LFVI is specifying a variational family that is also implicit. This matches the model's flexibility and allows for accurate approximation of the posterior. We demonstrate diverse applications: a large-scale physical simulator for predator-prey populations in ecology; a Bayesian generative adversarial network for discrete data; and a deep implicit model for text generation.
Implicit Weight Uncertainty in Neural Networks
Pawlowski, Nick, Rajchl, Martin, Glocker, Ben
We interpret HyperNetworks within the framework of variational inference within implicit distributions. Our method, Bayes by Hypernet, is able to model a richer variational distribution than previous methods. Experiments show that it achieves comparable predictive performance on the MNIST classification task while providing higher predictive uncertainties compared to MC-Dropout and regular maximum likelihood training.
Variational Continual Learning
Nguyen, Cuong V., Li, Yingzhen, Bui, Thang D., Turner, Richard E.
This paper develops variational continual learning (VCL), a simple but general framework for continual learning that fuses online variational inference (VI) and recent advances in Monte Carlo VI for neural networks. The framework can successfully train both deep discriminative models and deep generative models in complex continual learning settings where existing tasks evolve over time and entirely new tasks emerge. Experimental results show that variational continual learning outperforms state-of-the-art continual learning methods on a variety of tasks, avoiding catastrophic forgetting in a fully automatic way.
Simple and Scalable Predictive Uncertainty Estimation using Deep Ensembles
Lakshminarayanan, Balaji, Pritzel, Alexander, Blundell, Charles
Deep neural networks (NNs) are powerful black box predictors that have recently achieved impressive performance on a wide spectrum of tasks. Quantifying predictive uncertainty in NNs is a challenging and yet unsolved problem. Bayesian NNs, which learn a distribution over weights, are currently the state-of-the-art for estimating predictive uncertainty; however these require significant modifications to the training procedure and are computationally expensive compared to standard (non-Bayesian) NNs. We propose an alternative to Bayesian NNs that is simple to implement, readily parallelizable, requires very little hyperparameter tuning, and yields high quality predictive uncertainty estimates. Through a series of experiments on classification and regression benchmarks, we demonstrate that our method produces well-calibrated uncertainty estimates which are as good or better than approximate Bayesian NNs. To assess robustness to dataset shift, we evaluate the predictive uncertainty on test examples from known and unknown distributions, and show that our method is able to express higher uncertainty on out-of-distribution examples. We demonstrate the scalability of our method by evaluating predictive uncertainty estimates on ImageNet.