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 Bayesian Inference


A classification point-of-view about conditional Kendall's tau

arXiv.org Machine Learning

We show how the problem of estimating conditional Kendall's tau can be rewritten as a classification task. Conditional Kendall's tau is a conditional dependence parameter that is a characteristic of a given pair of random variables. The goal is to predict whether the pair is concordant (value of $1$) or discordant (value of $-1$) conditionally on some covariates. We prove the consistency and the asymptotic normality of a family of penalized approximate maximum likelihood estimators, including the equivalent of the logit and probit regressions in our framework. Then, we detail specific algorithms adapting usual machine learning techniques, including nearest neighbors, decision trees, random forests and neural networks, to the setting of the estimation of conditional Kendall's tau. A small simulation study compares their finite sample properties. Finally, we apply all these estimators to a dataset of European stock indices.


Learning Traffic Flow Dynamics using Random Fields

arXiv.org Machine Learning

This paper presents a mesoscopic stochastic model for the reconstruction of vehicle trajectories from data made available by subsets of (probe) vehicles. Long-range vehicle interactions are applied in a totally asymmetric simple exclusion process to capture information made available to connected and autonomous vehicles. The dynamics are represented by a factor graph, which enables learning of traffic dynamics from historical data using Bayesian belief propagation. Adequate probe penetration levels for faithful reconstruction on single-lane roads is investigated. The estimation technique is tested using a vehicle trajectory dataset generated using an independent microscopic traffic simulator. Although the parameters of the traffic state estimation model are learned from (simulated) historical data, the proposed algorithm is found to be robust to unpredictable conditions. Moreover, by exposing the algorithm to varying traffic conditions with increasingly larger datasets, the probe penetration rates required to capture the traffic dynamics effectively can be substantially reduced. The results also highlight the need to take into account randomness in the spatio-temporal coverage associated with probe data for reliable state estimation algorithms.


Expanding the Active Inference Landscape: More Intrinsic Motivations in the Perception-Action Loop

arXiv.org Artificial Intelligence

Active inference is an ambitious theory that treats perception, inference and action selection of autonomous agents under the heading of a single principle. It suggests biologically plausible explanations for many cognitive phenomena, including consciousness. In active inference, action selection is driven by an objective function that evaluates possible future actions with respect to current, inferred beliefs about the world. Active inference at its core is independent from extrinsic rewards, resulting in a high level of robustness across e.g.\ different environments or agent morphologies. In the literature, paradigms that share this independence have been summarised under the notion of intrinsic motivations. In general and in contrast to active inference, these models of motivation come without a commitment to particular inference and action selection mechanisms. In this article, we study if the inference and action selection machinery of active inference can also be used by alternatives to the originally included intrinsic motivation. The perception-action loop explicitly relates inference and action selection to the environment and agent memory, and is consequently used as foundation for our analysis. We reconstruct the active inference approach, locate the original formulation within, and show how alternative intrinsic motivations can be used while keeping many of the original features intact. Furthermore, we illustrate the connection to universal reinforcement learning by means of our formalism. Active inference research may profit from comparisons of the dynamics induced by alternative intrinsic motivations. Research on intrinsic motivations may profit from an additional way to implement intrinsically motivated agents that also share the biological plausibility of active inference.


Probabilistic PARAFAC2

arXiv.org Machine Learning

The PARAFAC2 is a multimodal factor analysis model suitable for analyzing multi-way data when one of the modes has incomparable observation units, for example because of differences in signal sampling or batch sizes. A fully probabilistic treatment of the PARAFAC2 is desirable in order to improve robustness to noise and provide a well founded principle for determining the number of factors, but challenging because the factor loadings are constrained to be orthogonal. We develop two probabilistic formulations of the PARAFAC2 along with variational procedures for inference: In the one approach, the mean values of the factor loadings are orthogonal leading to closed form variational updates, and in the other, the factor loadings themselves are orthogonal using a matrix Von Mises-Fisher distribution. We contrast our probabilistic formulation to the conventional direct fitting algorithm based on maximum likelihood. On simulated data and real fluorescence spectroscopy and gas chromatography-mass spectrometry data, we compare our approach to the conventional PARAFAC2 model estimation and find that the probabilistic formulation is more robust to noise and model order misspecification. The probabilistic PARAFAC2 thus forms a promising framework for modeling multi-way data accounting for uncertainty.


Neural-net-induced Gaussian process regression for function approximation and PDE solution

arXiv.org Machine Learning

Neural-net-induced Gaussian process (NNGP) regression inherits both the high expressivity of deep neural networks (deep NNs) as well as the uncertainty quantification property of Gaussian processes (GPs). We generalize the current NNGP to first include a larger number of hyperparameters and subsequently train the model by maximum likelihood estimation. Unlike previous works on NNGP that targeted classification, here we apply the generalized NNGP to function approximation and to solving partial differential equations (PDEs). Specifically, we develop an analytical iteration formula to compute the covariance function of GP induced by deep NN with an error-function nonlinearity. We compare the performance of the generalized NNGP for function approximations and PDE solutions with those of GPs and fully-connected NNs. We observe that for smooth functions the generalized NNGP can yield the same order of accuracy with GP, while both NNGP and GP outperform deep NN. For non-smooth functions, the generalized NNGP is superior to GP and comparable or superior to deep NN.


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Random Feature Stein Discrepancies

arXiv.org Machine Learning

Computable Stein discrepancies have been deployed for a variety of applications, including sampler selection in posterior inference, approximate Bayesian inference, and goodness-of-fit testing. Existing convergence-determining Stein discrepancies admit strong theoretical guarantees but suffer from a computational cost that grows quadratically in the sample size. While linear-time Stein discrepancies have been proposed for goodness-of-fit testing, they exhibit avoidable degradations in testing power---even when power is explicitly optimized. To address these shortcomings, we introduce feature Stein discrepancies ($\Phi$SDs), a new family of quality measures that can be cheaply approximated using importance sampling. We show how to construct $\Phi$SDs that provably determine the convergence of a sample to its target and develop high-accuracy approximations---random $\Phi$SDs (R$\Phi$SDs)---which are computable in near-linear time. In our experiments with sampler selection for approximate posterior inference and goodness-of-fit testing, R$\Phi$SDs typically perform as well or better than quadratic-time KSDs while being orders of magnitude faster to compute.


Large-Scale Stochastic Sampling from the Probability Simplex

arXiv.org Machine Learning

Emily B. Fox Department of Statistics University of Washington Stochastic gradient Markov chain Monte Carlo (SGMCMC) has become a popular method for scalable Bayesian inference. These methods are based on sampling a discrete-time approximation to a continuous time process, such as the Langevin diffusion. When applied to distributions defined on a constrained space, such as the simplex, the time-discretisation error can dominate when we are near the boundary of the space. We demonstrate that while current SGMCMC methods for the simplex perform well in certain cases, they struggle with sparse simplex spaces; when many of the components are close to zero. However, most popular large-scale applications of Bayesian inference on simplex spaces, such as network or topic models, are sparse. We argue that this poor performance is due to the biases of SGMCMC caused by the discretization error. To get around this, we propose the stochastic CIR process, which removes all discretization error and we prove that samples from the stochastic CIR process are asymptotically unbiased. Use of the stochastic CIR process within a SGMCMC algorithm is shown to give substantially better performance for a topic model and a Dirichlet process mixture model than existing SGMCMC approaches.


An Asynchronous Distributed Expectation Maximization Algorithm For Massive Data: The DEM Algorithm

arXiv.org Machine Learning

The family of Expectation-Maximization (EM) algorithms provides a general approach to fitting flexible models for large and complex data. The expectation (E) step of EM-type algorithms is time-consuming in massive data applications because it requires multiple passes through the full data. We address this problem by proposing an asynchronous and distributed generalization of the EM called the Distributed EM (DEM). Using DEM, existing EM-type algorithms are easily extended to massive data settings by exploiting the divide-and-conquer technique and widely available computing power, such as grid computing. The DEM algorithm reserves two groups of computing processes called \emph{workers} and \emph{managers} for performing the E step and the maximization step (M step), respectively. The samples are randomly partitioned into a large number of disjoint subsets and are stored on the worker processes. The E step of DEM algorithm is performed in parallel on all the workers, and every worker communicates its results to the managers at the end of local E step. The managers perform the M step after they have received results from a $\gamma$-fraction of the workers, where $\gamma$ is a fixed constant in $(0, 1]$. The sequence of parameter estimates generated by the DEM algorithm retains the attractive properties of EM: convergence of the sequence of parameter estimates to a local mode and linear global rate of convergence. Across diverse simulations focused on linear mixed-effects models, the DEM algorithm is significantly faster than competing EM-type algorithms while having a similar accuracy. The DEM algorithm maintains its superior empirical performance on a movie ratings database consisting of 10 million ratings.


Incremental Sparse Bayesian Ordinal Regression

arXiv.org Machine Learning

Ordinal Regression (OR) aims to model the ordering information between different data categories, which is a crucial topic in multi-label learning. An important class of approaches to OR models the problem as a linear combination of basis functions that map features to a high dimensional non-linear space. However, most of the basis function-based algorithms are time consuming. We propose an incremental sparse Bayesian approach to OR tasks and introduce an algorithm to sequentially learn the relevant basis functions in the ordinal scenario. Our method, called Incremental Sparse Bayesian Ordinal Regression (ISBOR), automatically optimizes the hyper-parameters via the type-II maximum likelihood method. By exploiting fast marginal likelihood optimization, ISBOR can avoid big matrix inverses, which is the main bottleneck in applying basis function-based algorithms to OR tasks on large-scale datasets. We show that ISBOR can make accurate predictions with parsimonious basis functions while offering automatic estimates of the prediction uncertainty. Extensive experiments on synthetic and real word datasets demonstrate the efficiency and effectiveness of ISBOR compared to other basis function-based OR approaches.