Mining discriminative features for graph data has attracted much attention in recent years due to its important role in constructing graph classifiers, generating graph indices, etc. Most measurement of interestingness of discriminative subgraph features are defined on certain graphs, where the structure of graph objects are certain, and the binary edges within each graph represent the "presence" of linkages among the nodes. In many real-world applications, however, the linkage structure of the graphs is inherently uncertain. Therefore, existing measurements of interestingness based upon certain graphs are unable to capture the structural uncertainty in these applications effectively. In this paper, we study the problem of discriminative subgraph feature selection from uncertain graphs. This problem is challenging and different from conventional subgraph mining problems because both the structure of the graph objects and the discrimination score of each subgraph feature are uncertain. To address these challenges, we propose a novel discriminative subgraph feature selection method, DUG, which can find discriminative subgraph features in uncertain graphs based upon different statistical measures including expectation, median, mode and phi-probability. We first compute the probability distribution of the discrimination scores for each subgraph feature based on dynamic programming. Then a branch-and-bound algorithm is proposed to search for discriminative subgraphs efficiently. Extensive experiments on various neuroimaging applications (i.e., Alzheimer's Disease, ADHD and HIV) have been performed to analyze the gain in performance by taking into account structural uncertainties in identifying discriminative subgraph features for graph classification.

We consider the problem of finding all enclosing rectangles of minimum area that can contain a given set of rectangles without overlap. Our rectangle packer chooses the x-coordinates of all the rectangles before any of the y-coordinates. We then transform the problem into a perfect-packing problem with no empty space by adding additional rectangles. To determine the y-coordinates, we branch on the different rectangles that can be placed in each empty position. Our packer allows us to extend the known solutions for a consecutive-square benchmark from 27 to 32 squares. We also introduce three new benchmarks, avoiding properties that make a benchmark easy, such as rectangles with shared dimensions. Our third benchmark consists of rectangles of increasingly high precision. To pack them efficiently, we limit the rectangles' coordinates and the bounding box dimensions to the set of subset sums of the rectangles' dimensions. Overall, our algorithms represent the current state-of-the-art for this problem, outperforming other algorithms by orders of magnitude, depending on the benchmark.

We consider the problem of finding good finite-horizon policies for POMDPs under the expected reward metric. The policies considered are {em free finite-memory policies with limited memory}; a policy is a mapping from the space of observation-memory pairs to the space of action-memeory pairs (the policy updates the memory as it goes), and the number of possible memory states is a parameter of the input to the policy-finding algorithms. The algorithms considered here are preliminary implementations of three search heuristics: local search, simulated annealing, and genetic algorithms. We compare their outcomes to each other and to the optimal policies for each instance. We compare run times of each policy and of a dynamic programming algorithm for POMDPs developed by Hansen that iteratively improves a finite-state controller --- the previous state of the art for finite memory policies. The value of the best policy can only improve as the amount of memory increases, up to the amount needed for an optimal finite-memory policy. Our most surprising finding is that more memory helps in another way: given more memory than is needed for an optimal policy, the algorithms are more likely to converge to optimal-valued policies.

The paper is a second in a series of two papers evaluating the power of a new scheme that generates search heuristics mechanically. The heuristics are extracted from an approximation scheme called mini-bucket elimination that was recently introduced. The first paper introduced the idea and evaluated it within Branch-and-Bound search. In the current paper the idea is further extended and evaluated within Best-First search. The resulting algorithms are compared on coding and medical diagnosis problems, using varying strength of the mini-bucket heuristics. Our results demonstrate an effective search scheme that permits controlled tradeoff between preprocessing (for heuristic generation) and search. Best-first search is shown to outperform Branch-and-Bound, when supplied with good heuristics, and sufficient memory space.

In many domains it is desirable to assess the preferences of users in a qualitative rather than quantitative way. Such representations of qualitative preference orderings form an importnat component of automated decision tools. We propose a graphical representation of preferences that reflects conditional dependence and independence of preference statements under a ceteris paribus (all else being equal) interpretation. Such a representation is ofetn compact and arguably natural. We describe several search algorithms for dominance testing based on this representation; these algorithms are quite effective, especially in specific network topologies, such as chain-and tree- structured networks, as well as polytrees.

Logic is the science of correct inferences and a logical system is a tool to prove assertions in a certain logic in a correct way. There are many logical systems, and many ways of formalizing them, e.g., using natural deduction or sequent calculus. Calculus of structures (CoS) is a new formalism proposed by Alessio Guglielmi in 2004 that generalizes sequent calculus in the sense that inference rules can be applied at any depth inside a formula, rather than only to the main connective. With this feature, proofs in CoS are shorter than in any other formalism supporting analytical proofs. Although it is great to have the freedom and expressiveness of CoS, under the point of view of proof search more freedom means a larger search space. And that should be restricted when looking for complete automation of deductive systems. Some efforts were made to reduce this non-determinism, but they are all basically operational approaches, and no solid theoretical result regarding the computational behaviour of CoS has been achieved so far. The main focus of this thesis is to discuss ways to propose a proof search strategy for CoS suitable to implementation. This strategy should be theoretical instead of purely operational. We introduce the concept of incoherence number of substructures inside structures and we use this concept to achieve our main result: there is an algorithm that, according to our conjecture, corresponds to a proof search strategy to every provable structure in the subsystem of FBV (the multiplicative linear logic MLL plus the rule mix) containing only pairwise distinct atoms. Our algorithm is implemented and we believe our strategy is a good starting point to exploit the computational aspects of CoS in more general systems, like BV itself.

This paper extends the work in [Suzuki, 1996] and presents an efficient depth-first branch-and-bound algorithm for learning Bayesian network structures, based on the minimum description length (MDL) principle, for a given (consistent) variable ordering. The algorithm exhaustively searches through all network structures and guarantees to find the network with the best MDL score. Preliminary experiments show that the algorithm is efficient, and that the time complexity grows slowly with the sample size. The algorithm is useful for empirically studying both the performance of suboptimal heuristic search algorithms and the adequacy of the MDL principle in learning Bayesian networks.

In this paper, we present an efficient way of performing stepwise selection in the class of decomposable models. The main contribution of the paper is a simple characterization of the edges that canbe added to a decomposable model while keeping the resulting model decomposable and an efficient algorithm for enumerating all such edges for a given model in essentially O(1) time per edge. We also discuss how backward selection can be performed efficiently using our data structures.We also analyze the complexity of the complete stepwise selection procedure, including the complexity of choosing which of the eligible dges to add to (or delete from) the current model, with the aim ofminimizing the Kullback-Leibler distance of the resulting model from the saturated model for the data.

Determinantal point processes (DPPs) are elegant probabilistic models of repulsion that arise in quantum physics and random matrix theory. In contrast to traditional structured models like Markov random fields, which become intractable and hard to approximate in the presence of negative correlations, DPPs offer efficient and exact algorithms for sampling, marginalization, conditioning, and other inference tasks. We provide a gentle introduction to DPPs, focusing on the intuitions, algorithms, and extensions that are most relevant to the machine learning community, and show how DPPs can be applied to real-world applications like finding diverse sets of high-quality search results, building informative summaries by selecting diverse sentences from documents, modeling non-overlapping human poses in images or video, and automatically building timelines of important news stories.

MAP is the problem of finding a most probable instantiation of a set of variables in a Bayesian network, given evidence. Unlike computing marginals, posteriors, and MPE (a special case of MAP), the time and space complexity of MAP is not only exponential in the network treewidth, but also in a larger parameter known as the "constrained" treewidth. In practice, this means that computing MAP can be orders of magnitude more expensive than computingposteriors or MPE. Thus, practitioners generally avoid MAP computations, resorting instead to approximating them by the most likely value for each MAP variableseparately, or by MPE.We present a method for approximating MAP using local search. This method has space complexity which is exponential onlyin the treewidth, as is the complexity of each search step. We investigate the effectiveness of different local searchmethods and several initialization strategies and compare them to otherapproximation schemes.Experimental results show that local search provides a much more accurate approximation of MAP, while requiring few search steps.Practically, this means that the complexity of local search is often exponential only in treewidth as opposed to the constrained treewidth, making approximating MAP as efficient as other computations.