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 Scientific Discovery


GNN: Graph Neural Network and Large Language Model for Data Discovery

arXiv.org Artificial Intelligence

Our algorithm GNN: Graph Neural Network and Large Language Model for Data Discovery inherit the benefits of \cite{hoang2024plod} (PLOD: Predictive Learning Optimal Data Discovery), \cite{Hoang2024BODBO} (BOD: Blindly Optimal Data Discovery) in terms of overcoming the challenges of having to predefine utility function and the human input for attribute ranking, which helps prevent the time-consuming loop process. In addition to these previous works, our algorithm GNN leverages the advantages of graph neural networks and large language models to understand text type values that cannot be understood by PLOD and MOD, thus making the task of predicting outcomes more reliable. GNN could be seen as an extension of PLOD in terms of understanding the text type value and the user's preferences, not only numerical values but also text values, making the promise of data science and analytics purposes.


Artificial intelligence for science: The easy and hard problems

arXiv.org Artificial Intelligence

A suite of impressive scientific discoveries have been driven by recent advances in artificial intelligence. These almost all result from training flexible algorithms to solve difficult optimization problems specified in advance by teams of domain scientists and engineers with access to large amounts of data. Although extremely useful, this kind of problem solving only corresponds to one part of science - the "easy problem." The other part of scientific research is coming up with the problem itself - the "hard problem." Solving the hard problem is beyond the capacities of current algorithms for scientific discovery because it requires continual conceptual revision based on poorly defined constraints. We can make progress on understanding how humans solve the hard problem by studying the cognitive science of scientists, and then use the results to design new computational agents that automatically infer and update their scientific paradigms.


Automated Explanation Selection for Scientific Discovery

arXiv.org Artificial Intelligence

Automated reasoning is a key technology in the young but rapidly growing field of Explainable Artificial Intelligence (XAI). Explanability helps build trust in artificial intelligence systems beyond their mere predictive accuracy and robustness. In this paper, we propose a cycle of scientific discovery that combines machine learning with automated reasoning for the generation and the selection of explanations. We present a taxonomy of explanation selection problems that draws on insights from sociology and cognitive science. These selection criteria subsume existing notions and extend them with new properties.


TabSketchFM: Sketch-based Tabular Representation Learning for Data Discovery over Data Lakes

arXiv.org Artificial Intelligence

Enterprises have a growing need to identify relevant tables in data lakes; e.g. tables that are unionable, joinable, or subsets of each other. Tabular neural models can be helpful for such data discovery tasks. In this paper, we present TabSketchFM, a neural tabular model for data discovery over data lakes. First, we propose a novel pre-training sketch-based approach to enhance the effectiveness of data discovery techniques in neural tabular models. Second, to further finetune the pretrained model for several downstream tasks, we develop LakeBench, a collection of 8 benchmarks to help with different data discovery tasks such as finding tasks that are unionable, joinable, or subsets of each other. We then show on these finetuning tasks that TabSketchFM achieves state-of-the art performance compared to existing neural models. Third, we use these finetuned models to search for tables that are unionable, joinable, or can be subsets of each other. Our results demonstrate improvements in F1 scores for search compared to state-of-the-art techniques (even up to 70% improvement in a joinable search benchmark). Finally, we show significant transfer across datasets and tasks establishing that our model can generalize across different tasks over different data lakes


Contraction of Private Quantum Channels and Private Quantum Hypothesis Testing

arXiv.org Machine Learning

A quantum generalized divergence by definition satisfies the data-processing inequality; as such, the relative decrease in such a divergence under the action of a quantum channel is at most one. This relative decrease is formally known as the contraction coefficient of the channel and the divergence. Interestingly, there exist combinations of channels and divergences for which the contraction coefficient is strictly less than one. Furthermore, understanding the contraction coefficient is fundamental for the study of statistical tasks under privacy constraints. To this end, here we establish upper bounds on contraction coefficients for the hockey-stick divergence under privacy constraints, where privacy is quantified with respect to the quantum local differential privacy (QLDP) framework, and we fully characterize the contraction coefficient for the trace distance under privacy constraints. With the machinery developed, we also determine an upper bound on the contraction of both the Bures distance and quantum relative entropy relative to the normalized trace distance, under QLDP constraints. Next, we apply our findings to establish bounds on the sample complexity of quantum hypothesis testing under privacy constraints. Furthermore, we study various scenarios in which the sample complexity bounds are tight, while providing order-optimal quantum channels that achieve those bounds. Lastly, we show how private quantum channels provide fairness and Holevo information stability in quantum learning settings.


The Use of AI-Robotic Systems for Scientific Discovery

arXiv.org Artificial Intelligence

The process of developing theories and models and testing them with experiments is fundamental to the scientific method. Automating the entire scientific method then requires not only automation of the induction of theories from data, but also experimentation from design to implementation. This is the idea behind a robot scientist -- a coupled system of AI and laboratory robotics that has agency to test hypotheses with real-world experiments. In this chapter we explore some of the fundamentals of robot scientists in the philosophy of science. We also map the activities of a robot scientist to machine learning paradigms, and argue that the scientific method shares an analogy with active learning. We demonstrate these concepts using examples from previous robot scientists, and also from Genesis: a next generation robot scientist designed for research in systems biology, comprising a micro-fluidic system with 1000 computer-controlled micro-bioreactors and interpretable models based in controlled vocabularies and logic.


DISCOVERYWORLD: A Virtual Environment for Developing and Evaluating Automated Scientific Discovery Agents

arXiv.org Artificial Intelligence

Automated scientific discovery promises to accelerate progress across scientific domains. However, developing and evaluating an AI agent's capacity for end-to-end scientific reasoning is challenging as running real-world experiments is often prohibitively expensive or infeasible. In this work we introduce DISCOVERYWORLD, the first virtual environment for developing and benchmarking an agent's ability to perform complete cycles of novel scientific discovery. DISCOVERYWORLD contains a variety of different challenges, covering topics as diverse as radioisotope dating, rocket science, and proteomics, to encourage development of general discovery skills rather than task-specific solutions. DISCOVERYWORLD itself is an inexpensive, simulated, text-based environment (with optional 2D visual overlay). It includes 120 different challenge tasks, spanning eight topics each with three levels of difficulty and several parametric variations. Each task requires an agent to form hypotheses, design and run experiments, analyze results, and act on conclusions. DISCOVERYWORLD further provides three automatic metrics for evaluating performance, based on (a) task completion, (b) task-relevant actions taken, and (c) the discovered explanatory knowledge. We find that strong baseline agents, that perform well in prior published environments, struggle on most DISCOVERYWORLD tasks, suggesting that DISCOVERYWORLD captures some of the novel challenges of discovery, and thus that DISCOVERYWORLD may help accelerate near-term development and assessment of scientific discovery competency in agents. Code available at: www.github.com/allenai/discoveryworld


CMDBench: A Benchmark for Coarse-to-fine Multimodal Data Discovery in Compound AI Systems

arXiv.org Artificial Intelligence

Compound AI systems (CASs) that employ LLMs as agents to accomplish knowledge-intensive tasks via interactions with tools and data retrievers have garnered significant interest within database and AI communities. While these systems have the potential to supplement typical analysis workflows of data analysts in enterprise data platforms, unfortunately, CASs are subject to the same data discovery challenges that analysts have encountered over the years -- silos of multimodal data sources, created across teams and departments within an organization, make it difficult to identify appropriate data sources for accomplishing the task at hand. Existing data discovery benchmarks do not model such multimodality and multiplicity of data sources. Moreover, benchmarks of CASs prioritize only evaluating end-to-end task performance. To catalyze research on evaluating the data discovery performance of multimodal data retrievers in CASs within a real-world setting, we propose CMDBench, a benchmark modeling the complexity of enterprise data platforms. We adapt existing datasets and benchmarks in open-domain -- from question answering and complex reasoning tasks to natural language querying over structured data -- to evaluate coarse- and fine-grained data discovery and task execution performance. Our experiments reveal the impact of data retriever design on downstream task performance -- a 46% drop in task accuracy on average -- across various modalities, data sources, and task difficulty. The results indicate the need to develop optimization strategies to identify appropriate LLM agents and retrievers for efficient execution of CASs over enterprise data.


Robust Kernel Hypothesis Testing under Data Corruption

arXiv.org Machine Learning

We propose two general methods for constructing robust permutation tests under data corruption. The proposed tests effectively control the non-asymptotic type I error under data corruption, and we prove their consistency in power under minimal conditions. This contributes to the practical deployment of hypothesis tests for real-world applications with potential adversarial attacks. One of our methods inherently ensures differential privacy, further broadening its applicability to private data analysis. For the two-sample and independence settings, we show that our kernel robust tests are minimax optimal, in the sense that they are guaranteed to be non-asymptotically powerful against alternatives uniformly separated from the null in the kernel MMD and HSIC metrics at some optimal rate (tight with matching lower bound). Finally, we provide publicly available implementations and empirically illustrate the practicality of our proposed tests.


StatWhy: Formal Verification Tool for Statistical Hypothesis Testing Programs

arXiv.org Artificial Intelligence

Statistical methods have been widely misused and misinterpreted in various scientific fields, raising significant concerns about the integrity of scientific research. To develop techniques to mitigate this problem, we propose a new method for formally specifying and automatically verifying the correctness of statistical programs. In this method, programmers are reminded to check the requirements for statistical methods by annotating their source code. Then, a software tool called StatWhy automatically checks whether the programmers have properly specified the requirements for the statistical methods. This tool is implemented using the Why3 platform to verify the correctness of OCaml programs for statistical hypothesis testing. We demonstrate how StatWhy can be used to avoid common errors in a variety of popular hypothesis testing programs.