Model-Based Reasoning
Position: Biology is the Challenge Physics-Informed ML Needs to Evolve
Physics-Informed Machine Learning (PIML) has successfully integrated mechanistic understanding into machine learning, particularly in domains governed by well-known physical laws. This success has motivated efforts to apply PIML to biology, a field rich in dynamical systems but shaped by different constraints. Biological modeling, however, presents unique challenges: multi-faceted and uncertain prior knowledge, heterogeneous and noisy data, partial observability, and complex, high-dimensional networks. In this position paper, we argue that these challenges should not be seen as obstacles to PIML, but as catalysts for its evolution. We propose Biology-Informed Machine Learning (BIML): a principled extension of PIML that retains its structural grounding while adapting to the practical realities of biology. Rather than replacing PIML, BIML retools its methods to operate under softer, probabilistic forms of prior knowledge. We outline four foundational pillars as a roadmap for this transition: uncertainty quantification, contextualization, constrained latent structure inference, and scalability. Foundation Models and Large Language Models will be key enablers, bridging human expertise with computational modeling. We conclude with concrete recommendations to build the BIML ecosystem and channel PIML-inspired innovation toward challenges of high scientific and societal relevance.
KungfuBot: Physics-Based Humanoid Whole-Body Control for Learning Highly-Dynamic Skills
Xie, Weiji, Han, Jinrui, Zheng, Jiakun, Li, Huanyu, Liu, Xinzhe, Shi, Jiyuan, Zhang, Weinan, Bai, Chenjia, Li, Xuelong
Humanoid robots are promising to acquire various skills by imitating human behaviors. However, existing algorithms are only capable of tracking smooth, low-speed human motions, even with delicate reward and curriculum design. This paper presents a physics-based humanoid control framework, aiming to master highly-dynamic human behaviors such as Kungfu and dancing through multi-steps motion processing and adaptive motion tracking. For motion processing, we design a pipeline to extract, filter out, correct, and retarget motions, while ensuring compliance with physical constraints to the maximum extent. For motion imitation, we formulate a bi-level optimization problem to dynamically adjust the tracking accuracy tolerance based on the current tracking error, creating an adaptive curriculum mechanism. We further construct an asymmetric actor-critic framework for policy training. In experiments, we train whole-body control policies to imitate a set of highly-dynamic motions. Our method achieves significantly lower tracking errors than existing approaches and is successfully deployed on the Unitree G1 robot, demonstrating stable and expressive behaviors. The project page is https://kungfu-bot.github.io.
Self-induced stochastic resonance: A physics-informed machine learning approach
Savaliya, Divyesh, Yamakou, Marius E.
Self-induced stochastic resonance (SISR) is the emergence of coherent oscillations in slow-fast excitable systems driven solely by noise, without external periodic forcing or proximity to a bifurcation. This work presents a physics-informed machine learning framework for modeling and predicting SISR in the stochastic FitzHugh-Nagumo neuron. We embed the governing stochastic differential equations and SISR-asymptotic timescale-matching constraints directly into a Physics-Informed Neural Network (PINN) based on a Noise-Augmented State Predictor architecture. The composite loss integrates data fidelity, dynamical residuals, and barrier-based physical constraints derived from Kramers' escape theory. The trained PINN accurately predicts the dependence of spike-train coherence on noise intensity, excitability, and timescale separation, matching results from direct stochastic simulations with substantial improvements in accuracy and generalization compared with purely data-driven methods, while requiring significantly less computation. The framework provides a data-efficient and interpretable surrogate model for simulating and analyzing noise-induced coherence in multiscale stochastic systems.
ProofFlow: A Dependency Graph Approach to Faithful Proof Autoformalization
Cabral, Rafael, Do, Tuan Manh, Yu, Xuejun, Tai, Wai Ming, Feng, Zijin, Shen, Xin
Proof autoformalization, the task of translating natural language theorems and proofs into machine-verifiable code, is a critical step for integrating large language models into rigorous mathematical workflows. Current approaches focus on producing executable code, but they frequently fail to preserve the semantic meaning and logical structure of the original human-written argument. To address this, we introduce ProofFlow, a novel pipeline that treats structural fidelity as a primary objective. ProofFlow first constructs a directed acyclic graph (DAG) to map the logical dependencies between proof steps. Then, it employs a novel lemma-based approach to systematically formalize each step as an intermediate lemma, preserving the logical structure of the original argument. To facilitate evaluation, we present a new benchmark of 184 undergraduate-level problems, manually annotated with step-by-step solutions and logical dependency graphs, and introduce ProofScore, a new composite metric to evaluate syntactic correctness, semantic faithfulness, and structural fidelity. Experimental results show our pipeline sets a new state-of-the-art for autoformalization, achieving a ProofScore of 0.545, substantially exceeding baselines like full-proof formalization (0.123), which processes the entire proof at once, and step-proof formalization (0.072), which handles each step independently. Our pipeline, benchmark, and score metric are open-sourced to encourage further progress at https://github.com/Huawei-AI4Math/ProofFlow.
Physics-augmented Multi-task Gaussian Process for Modeling Spatiotemporal Dynamics
Recent advances in sensing and imaging technologies have enabled the collection of high-dimensional spatiotemporal data across complex geometric domains. However, effective modeling of such data remains challenging due to irregular spatial structures, rapid temporal dynamics, and the need to jointly predict multiple interrelated physical variables. This paper presents a physics-augmented multi-task Gaussian Process (P-M-GP) framework tailored for spatiotemporal dynamic systems. Specifically, we develop a geometry-aware, multi-task Gaussian Process (M-GP) model to effectively capture intrinsic spatiotemporal structure and inter-task dependencies. To further enhance the model fidelity and robustness, we incorporate governing physical laws through a physics-based regularization scheme, thereby constraining predictions to be consistent with governing dynamical principles. We validate the proposed P-M-GP framework on a 3D cardiac electrodynamics modeling task. Numerical experiments demonstrate that our method significantly improves prediction accuracy over existing methods by effectively incorporating domain-specific physical constraints and geometric prior.
SuperEx: Enhancing Indoor Mapping and Exploration using Non-Line-of-Sight Perception
Efficient exploration and mapping in unknown indoor environments is a fundamental challenge, with high stakes in time-critical settings. In current systems, robot perception remains confined to line-of-sight; occluded regions remain unknown until physically traversed, leading to inefficient exploration when layouts deviate from prior assumptions. In this work, we bring non-line-of-sight (NLOS) sensing to robotic exploration. We leverage single-photon LiDARs, which capture time-of-flight histograms that encode the presence of hidden objects - allowing robots to look around blind corners. Recent single-photon LiDARs have become practical and portable, enabling deployment beyond controlled lab settings. Prior NLOS works target 3D reconstruction in static, lab-based scenarios, and initial efforts toward NLOS-aided navigation consider simplified geometries. We introduce SuperEx, a framework that integrates NLOS sensing directly into the mapping-exploration loop. SuperEx augments global map prediction with beyond-line-of-sight cues by (i) carving empty NLOS regions from timing histograms and (ii) reconstructing occupied structure via a two-step physics-based and data-driven approach that leverages structural regularities. Evaluations on complex simulated maps and the real-world KTH Floorplan dataset show a 12% gain in mapping accuracy under < 30% coverage and improved exploration efficiency compared to line-of-sight baselines, opening a path to reliable mapping beyond direct visibility.
CausalVLBench: Benchmarking Visual Causal Reasoning in Large Vision-Language Models
Komanduri, Aneesh, Bhaila, Karuna, Wu, Xintao
Large language models (LLMs) have shown remarkable ability in various language tasks, especially with their emergent in-context learning capability. Extending LLMs to incorporate visual inputs, large vision-language models (LVLMs) have shown impressive performance in tasks such as recognition and visual question answering (VQA). Despite increasing interest in the utility of LLMs in causal reasoning tasks such as causal discovery and counterfactual reasoning, there has been relatively little work showcasing the abilities of LVLMs on visual causal reasoning tasks. We take this opportunity to formally introduce a comprehensive causal reasoning benchmark for multi-modal in-context learning from LVLMs. Our CausalVLBench encompasses three representative tasks: causal structure inference, intervention target prediction, and counterfactual prediction. We evaluate the ability of state-of-the-art open-source LVLMs on our causal reasoning tasks across three causal representation learning datasets and demonstrate their fundamental strengths and weaknesses. We hope that our benchmark elucidates the drawbacks of existing vision-language models and motivates new directions and paradigms in improving the visual causal reasoning abilities of LVLMs.