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Microsoft clarifies Windows 11 AI agents need permission to read your files

PCWorld

Microsoft updated its Windows 11 support documentation to clarify that AI agents now require explicit user permission to access six key folders: Documents, Downloads, Desktop, Music, Pictures, and Videos. PCWorld reports that users can manage these permissions through Windows 11 Settings under System > AI Components > Agents, with options including'Allow Always,' 'Ask Every Time,' and'Never Allow.' The permission settings apply collectively to all six folders rather than individually, giving users control over AI agent access to their personal files. Back in October, Microsoft released a new support page for Experimental Agentic Features, which details how AI agents and agent connectors work with Windows 11, Copilot, etc. Recently, that page was updated to say that AI agents would be able to access the contents of six select folders in Windows 11--Documents, Downloads, Desktop, Music, Pictures, Videos--which understandably raised concerns. Now, Microsoft clarifies that you'll need to give your permission for AI agents to access the contents of those six folders. When selecting permissions, you'll have options for "Allow Always" (the agent can access these folders whenever it needs to), "Ask Every Time" (you'll be prompted when the agent needs access to the folders), and "Never Allow" (the agent will be denied the request every time). Note that it isn't possible to allow individual access settings per folder. The setting applies to all six folders or none of them.


CC-GRMAS: A Multi-Agent Graph Neural System for Spatiotemporal Landslide Risk Assessment in High Mountain Asia

arXiv.org Artificial Intelligence

Landslides are a growing climate induced hazard with severe environmental and human consequences, particularly in high mountain Asia. Despite increasing access to satellite and temporal datasets, timely detection and disaster response remain underdeveloped and fragmented. This work introduces CC-GRMAS, a framework leveraging a series of satellite observations and environmental signals to enhance the accuracy of landslide forecasting. The system is structured around three interlinked agents Prediction, Planning, and Execution, which collaboratively enable real time situational awareness, response planning, and intervention. By incorporating local environmental factors and operationalizing multi agent coordination, this approach offers a scalable and proactive solution for climate resilient disaster preparedness across vulnerable mountainous terrains.


TheMCPCompany: Creating General-purpose Agents with Task-specific Tools

arXiv.org Artificial Intelligence

Since the introduction of the Model Context Protocol (MCP), the number of available tools for Large Language Models (LLMs) has increased significantly. These task-specific tool sets offer an alternative to general-purpose tools such as web browsers, while being easier to develop and maintain than GUIs. However, current general-purpose agents predominantly rely on web browsers for interacting with the environment. Here, we introduce TheMCPCompany, a benchmark for evaluating tool-calling agents on tasks that involve interacting with various real-world services. We use the REST APIs of these services to create MCP servers, which include over 18,000 tools. We also provide manually annotated ground-truth tools for each task. In our experiments, we use the ground truth tools to show the potential of tool-calling agents for both improving performance and reducing costs assuming perfect tool retrieval. Next, we explore agent performance using tool retrieval to study the real-world practicality of tool-based agents. While all models with tool retrieval perform similarly or better than browser-based agents, smaller models cannot take full advantage of the available tools through retrieval. On the other hand, GPT-5's performance with tool retrieval is very close to its performance with ground-truth tools. Overall, our work shows that the most advanced reasoning models are effective at discovering tools in simpler environments, but seriously struggle with navigating complex enterprise environments. TheMCPCompany reveals that navigating tens of thousands of tools and combining them in non-trivial ways to solve complex problems is still a challenging task for current models and requires both better reasoning and better retrieval models.


TranSimHub:A Unified Air-Ground Simulation Platform for Multi-Modal Perception and Decision-Making

arXiv.org Artificial Intelligence

Air-ground collaborative intelligence is becoming a key approach for next-generation urban intelligent transportation management, where aerial and ground systems work together on perception, communication, and decision-making. However, the lack of a unified multi-modal simulation environment has limited progress in studying cross-domain perception, coordination under communication constraints, and joint decision optimization. To address this gap, we present TranSimHub, a unified simulation platform for air-ground collaborative intelligence. TranSimHub offers synchronized multi-view rendering across RGB, depth, and semantic segmentation modalities, ensuring consistent perception between aerial and ground viewpoints. It also supports information exchange between the two domains and includes a causal scene editor that enables controllable scenario creation and counterfactual analysis under diverse conditions such as different weather, emergency events, and dynamic obstacles. We release TranSimHub as an open-source platform that supports end-to-end research on perception, fusion, and control across realistic air and ground traffic scenes. Our code is available at https://github.com/Traffic-Alpha/TransSimHub.


Towards Personalized Deep Research: Benchmarks and Evaluations

arXiv.org Artificial Intelligence

Deep Research Agents (DRAs) can autonomously conduct complex investigations and generate comprehensive reports, demonstrating strong real-world potential. However, existing benchmarks primarily evaluate DRAs on generic quality metrics and overlook personalization, a critical dimension for individual users. However, existing evaluations mostly rely on close-ended benchmarks, while open-ended deep research benchmarks remain scarce and typically neglect personalized scenarios. To bridge this gap, we introduce Personalized Deep Research Bench (PDR-Bench), the first benchmark for evaluating personalization in DRAs. It pairs 50 diverse research tasks across 10 domains with 25 authentic user profiles that combine structured persona attributes with dynamic real-world contexts, yielding 250 realistic user-task queries. To assess system performance, we propose the PQR Evaluation Framework, which jointly measures Personalization Alignment, Content Quality, and Factual Reliability. Our experiments on a range of systems highlight current capabilities and limitations in handling personalized deep research. This work establishes a rigorous foundation for developing and evaluating the next generation of truly personalized AI research assistants.


SpatialScore: Towards Comprehensive Evaluation for Spatial Intelligence

arXiv.org Artificial Intelligence

Existing evaluations of multimodal large language models (MLLMs) on spatial intelligence are typically fragmented and limited in scope. In this work, we aim to conduct a holistic assessment of the spatial understanding capabilities of modern MLLMs and propose complementary data-driven and agent-based solutions. Specifically, we make the following contributions: (i) we introduce SpatialScore, to our knowledge, the most comprehensive and diverse benchmark for multimodal spatial intelligence to date. It covers multiple visual data types, input modalities, and question-answering formats, and contains approximately 5K manually verified samples spanning 30 distinct tasks; (ii) using SpatialScore, we extensively evaluate 40 representative MLLMs, revealing persistent challenges and a substantial gap between current models and human-level spatial intelligence; (iii) to advance model capabilities, we construct SpatialCorpus, a large-scale training resource with 331K multimodal QA samples that supports fine-tuning on spatial reasoning tasks and significantly improves the performance of existing models (e.g., Qwen3-VL); (iv) to complement this data-driven route with a training-free paradigm, we develop SpatialAgent, a multi-agent system equipped with 12 specialized spatial perception tools that supports both Plan-Execute and ReAct reasoning, enabling substantial gains in spatial reasoning without additional model training. Extensive experiments and in-depth analyses demonstrate the effectiveness of our benchmark, corpus, and agent framework. We expect these resources to serve as a solid foundation for advancing MLLMs toward human-level spatial intelligence. All data, code, and models will be released to the research community.


Emergent Collective Memory in Decentralized Multi-Agent AI Systems

arXiv.org Artificial Intelligence

We demonstrate how collective memory emerges in decentralized multi-agent systems through the interplay between individual agent memory and environmental trace communication. Our agents maintain internal memory states while depositing persistent environmental traces, creating a spatially distributed collective memory without centralized control. Comprehensive validation across five environmental conditions (20x20 to 50x50 grids, 5-20 agents, 50 runs per configuration) reveals a critical asymmetry: individual memory alone provides 68.7% performance improvement over no-memory baselines (1563.87 vs 927.23, p < 0.001), while environmental traces without memory fail completely. This demonstrates that memory functions independently but traces require cognitive infrastructure for interpretation. Systematic density-sweep experiments (rho in [0.049, 0.300], up to 625 agents) validate our theoretical phase transition prediction. On realistic large grids (30x30, 50x50), stigmergic coordination dominates above rho ~ 0.20, with traces outperforming memory by 36-41% on composite metrics despite lower food efficiency. The experimental crossover confirms the predicted critical density rho_c = 0.230 within 13% error.


A Simulation Framework for Studying Recommendation-Network Co-evolution in Social Platforms

arXiv.org Artificial Intelligence

Studying how recommendation systems reshape social networks is difficult on live platforms: confounds abound, and controlled experiments risk user harm. We present an agent-based simulator where content production, tie formation, and a graph attention network (GAT) recommender co-evolve in a closed loop. We calibrate parameters using Mastodon data and validate out-of-sample against Bluesky (4--6\% error on structural metrics; 10--15\% on held-out temporal splits). Across 18 configurations at 100 agents, we find that \emph{activation timing} affects outcomes: introducing recommendations at $t=10$ vs.\ $t=40$ decreases transitivity by 10\% while engagement differs by $<$8\%. Delaying activation increases content diversity by 9\% while reducing modularity by 4\%. Scaling experiments ($n$ up to 5,000) show the effect persists but attenuates. Jacobian analysis confirms local stability under bounded reactance parameters. We release configuration schemas and reproduction scripts.


Empirical Hardness in Multi-Agent Pathfinding: Research Challenges and Opportunities

arXiv.org Artificial Intelligence

Multi-agent pathfinding (MAPF) is the problem of finding collision-free paths for a team of agents on a map. Although MAPF is NP-hard, the hardness of solving individual instances varies significantly, revealing a gap between theoretical complexity and actual hardness. This paper outlines three key research challenges in MAPF empirical hardness to understand such phenomena. The first challenge, known as algorithm selection, is determining the best-performing algorithms for a given instance. The second challenge is understanding the key instance features that affect MAPF empirical hardness, such as structural properties like phase transition and backbone/backdoor. The third challenge is how to leverage our knowledge of MAPF empirical hardness to effectively generate hard MAPF instances or diverse benchmark datasets. This work establishes a foundation for future empirical hardness research and encourages deeper investigation into these promising and underexplored areas.


DynaMate: An Autonomous Agent for Protein-Ligand Molecular Dynamics Simulations

arXiv.org Artificial Intelligence

Force field-based molecular dynamics (MD) simulations are indispensable for probing the structure, dynamics, and functions of biomolecular systems, including proteins and protein-ligand complexes. Despite their broad utility in drug discovery and protein engineering, the technical complexity of MD setup, encompassing parameterization, input preparation, and software configuration, remains a major barrier for widespread and efficient usage. Agentic LLMs have demonstrated their capacity to autonomously execute multi-step scientific processes, and to date, they have not successfully been used to automate protein-ligand MD workflows. Here, we present DynaMate, a modular multi-agent framework that autonomously designs and executes complete MD workflows for both protein and protein-ligand systems, and offers free energy binding affinity calculations with the MM/PB(GB)SA method. The framework integrates dynamic tool use, web search, PaperQA, and a self-correcting behavior. DynaMate comprises three specialized modules, interacting to plan the experiment, perform the simulation, and analyze the results. We evaluated its performance across twelve benchmark systems of varying complexity, assessing success rate, efficiency, and adaptability. DynaMate reliably performed full MD simulations, corrected runtime errors through iterative reasoning, and produced meaningful analyses of protein-ligand interactions. This automated framework paves the way toward standardized, scalable, and time-efficient molecular modeling pipelines for future biomolecular and drug design applications.