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Dual-Comb Ghost Imaging with Transformer-Based Reconstruction for Optical Fiber Endomicroscopy

Neural Information Processing Systems

Endoscopic imaging is indispensable for visualizing internal organs, yet conventional systems remain bulky and costly because they rely on large, multi-element optics, which limits their ability to access and image certain areas of the body. Achieving high-quality endomicroscopy with hundred micron-scale and inexpensive hardware remains a grand challenge. Optical fibers offer a sub-millimeter-scale imaging conduit that could meet this need, but existing fiber-based approaches typically require either raster scanning or multicore bundles, which limit resolution and speed of imaging. In this work, we overcome these limitations by combining dualcomb interferometry with optical ghost imaging and advanced algorithm. Optical frequency combs enable precise and parallel speckle illumination via wavelengthdivision multiplexing through a single-core fiber, while our dual-comb compressive ghost imaging approach enables snapshot detection of bucket-sum signals using a single-pixel detector, eliminating the need for both spatial and spectral scanning. To reconstruct images from these highly compressed measurements, we introduce Optical Ghost-GPT, a transformer-based image reconstruction model that enables fast, high-fidelity recovery at low sampling ratios. Our dual-comb ghost imaging approach, combined with the novel algorithm, outperforms classical ghost imaging techniques in both speed and accuracy, enabling real-time, high-resolution endoscopic imaging with a significantly reduced device footprint. This advancement paves the way for non-invasive, high-resolution, low-cost endomicroscopy and other sensing applications constrained by hardware size and complexity.


LittleBit: Ultra Low-Bit Quantization via Latent Factorization

Neural Information Processing Systems

The deployment of large language models (LLMs) is frequently hindered by prohibitive memory and computational requirements. While quantization mitigates these bottlenecks, maintaining model fidelity in the sub-1-bit regime remains a persistent challenge. In this paper, we introduce LITTLEBIT, a novel framework for extreme LLM compression. We target quantization rates as low as 0.1bits per weight (BPW), achieving a memory reduction of approximately 31, which effectively compresses Llama2-13B to under 0.9GB. We represent weights via low-rank latent matrix factorization and subsequently binarize the resulting factors. To counteract the information loss inherent to such drastic precision reduction, we integrate a multi-scale compensation mechanism that learns importance parameters across row, column, and latent dimensions. Two primary contributions enable effective training: Dual Sign-Value-Independent Decomposition (Dual-SVID) for quantization-aware training (QAT) initialization, and Residual Compensation to minimize approximation errors. Extensive experiments confirm the superiority of LITTLEBIT in the sub-1-bit domain; for instance, our method at 0.1 BPW surpasses the performance of leading techniques operating at 0.7BPW on Llama2-7B. We establish a new sizeperformance trade-off--unlocking a potential 11.6 inference speedup relative to FP16--and render powerful LLMs practical for resource-constrained environments.


SEC-bench: Automated Benchmarking of LLM Agents on Real-World Software Security Tasks

Neural Information Processing Systems

Rigorous security-focused evaluation of large language model (LLM) agents is imperative for establishing trust in their safe deployment throughout the software development lifecycle. However, existing benchmarks largely rely on synthetic challenges or simplified vulnerability datasets that fail to capture the complexity and ambiguity encountered by security engineers in practice. We introduce SEC-bench, the first fully automated benchmarking framework for evaluating LLM agents on authentic security engineering tasks. SEC-bench employs a novel multi-agent scaffold that automatically constructs code repositories with harnesses, reproduces vulnerabilities in isolated environments, and generates gold patches for reliable evaluation. Our framework automatically creates high-quality software vulnerability datasets with reproducible artifacts at a cost of only $0.87 per instance. Using SEC-bench, we implement two critical software security tasks to rigorously evaluate LLM agents' capabilities: proof-of-concept (PoC) generation and vulnerability patching. A comprehensive evaluation of state-of-the-art LLM code agents reveals significant performance gaps, achieving at most 18.0% success in PoC generation and 34.0% in vulnerability patching on our complete dataset. These results highlight the crucial steps needed toward developing LLM agents that are more practical, intelligent, and autonomous for security engineering.


Atomic Diffusion Models for Small Molecule Structure Elucidation from NMRSpectra

Neural Information Processing Systems

Nuclear Magnetic Resonance (NMR) spectroscopy is a cornerstone technique for determining the structures of small molecules and is especially critical in the discovery of novel natural products and clinical therapeutics. Yet, interpreting NMR spectra remains a time-consuming, manual process requiring extensive domain expertise. We introduce CHEFNMR (CHemical Elucidation From NMR), an endto-end framework that directly predicts an unknown molecule's structure solely from its 1DNMR spectra and chemical formula. We frame structure elucidation as conditional generation from an atomic diffusion model built on a non-equivariant transformer architecture. To model the complex chemical groups found in natural products, we generated a dataset of simulated 1DNMR spectra for over 111,000 natural products. CHEFNMR predicts the structures of challenging natural product compounds with an unsurpassed accuracy of over 65%. This work takes a significant step toward solving the grand challenge of automating small-molecule structure elucidation and highlights the potential of deep learning in accelerating molecular discovery.


a80ebbb4ec9e9b39789318a0a61e2e43-Paper-Conference.pdf

Neural Information Processing Systems

Recent advancements underscore the significant role of Reinforcement Learning (RL) in enhancing the Chain-of-Thought (CoT) reasoning capabilities of large language models (LLMs). Two prominent RL algorithms, Direct Preference Optimization (DPO) and Group Relative Policy Optimization (GRPO), are central to these developments, showcasing different pros and cons. Autoregressive image generation, also interpretable as a sequential CoT reasoning process, presents unique challenges distinct from LLM-based CoT reasoning. These encompass ensuring text-image consistency, improving image aesthetic quality, and designing sophisticated reward models, rather than relying on simpler rule-based rewards. While recent efforts have extended RL to this domain, these explorations typically lack an in-depth analysis of the domain-specific challenges and the characteristics of different RL strategies. To bridge this gap, we provide the first comprehensive investigation of the GRPO and DPO algorithms in autoregressive image generation, evaluating their in-domain performance and out-of-domain generalization, while scrutinizing the impact of different reward models on their respective capabilities. Our findings reveal that GRPO and DPO exhibit distinct advantages, and crucially, that reward models possessing stronger intrinsic generalization capabilities potentially enhance the generalization potential of the applied RL algorithms. Furthermore, we systematically explore three prevalent scaling strategies to enhance both their in-domain and out-of-domain proficiency, deriving unique insights into efficiently scaling performance for each paradigm. We hope our study paves a new path for inspiring future work on developing more effective RL algorithms to achieve robust CoT reasoning in the realm of autoregressive image generation.


CLEVER: ACurated Benchmark for Formally Verified Code Generation

Neural Information Processing Systems

We introduce CLEVER1, a high-quality, curated benchmark of 161 problems for end-to-end verified code generation in Lean. Each problem consists of (1) the task of generating a specification that matches a held-out ground-truth specification, and (2) the task of generating a Lean implementation that provably satisfies this specification. Unlike prior benchmarks, CLEVER avoids test-case supervision, LLM-generated annotations, and specifications that leak implementation logic or allow vacuous solutions. All outputs are verified post-hoc using Lean's type checker to ensure machine-checkable correctness. We use CLEVER to evaluate several few-shot and agentic approaches based on state-of-the-art language models. These methods all struggle to achieve full verification, establishing it as a challenging frontier benchmark for program synthesis and formal reasoning. Our benchmark can be found on GitHub as well as HuggingFace. All our evaluation code is also available online.


Causal Head Gating: AFramework for Interpreting Roles of Attention Heads in Transformers

Neural Information Processing Systems

We present causal head gating (CHG), a scalable method for interpreting the functional roles of attention heads in transformer models. CHG learns soft gates over heads and assigns them a causal taxonomy--facilitating, interfering, or irrelevant--based on their impact on task performance. Unlike prior approaches in mechanistic interpretability, which are hypothesis-driven and require prompt templates or target labels, CHG applies directly to any dataset using standard nexttoken prediction. We evaluate CHG across multiple large language models (LLMs) in the Llama 3 model family and diverse tasks, including syntax, commonsense, and mathematical reasoning, and show that CHG scores yield causal, not merely correlational, insight validated via ablation and causal mediation analyses. We also introduce contrastive CHG, a variant that isolates sub-circuits for specific task components. Our findings reveal that LLMs contain multiple sparse task-sufficient sub-circuits, that individual head roles depend on interactions with others (low modularity), and that instruction following and in-context learning rely on separable mechanisms.


ViSpec: Accelerating Vision-Language Models with Vision-Aware Speculative Decoding

Neural Information Processing Systems

Speculative decoding is a widely adopted technique for accelerating inference in large language models (LLMs), yet its application to vision-language models (VLMs) remains underexplored, with existing methods achieving only modest speedups (< 1.5). This gap is increasingly significant as multimodal capabilities become central to large-scale models. We hypothesize that large VLMs can effectively filter redundant image information layer by layer without compromising textual comprehension, whereas smaller draft models struggle to do so. To address this, we introduce Vision-Aware Speculative Decoding (ViSpec), a novel framework tailored for VLMs. ViSpec employs a lightweight vision adaptor module to compress image tokens into a compact representation, which is seamlessly integrated into the draft model's attention mechanism while preserving original image positional information. Additionally, we extract a global feature vector for each input image and augment all subsequent text tokens with this feature to enhance multimodal coherence. To overcome the scarcity of multimodal datasets with long assistant responses, we curate a specialized training dataset by repurposing existing datasets and generating extended outputs using the target VLM with modified prompts. Our training strategy mitigates the risk of the draft model exploiting direct access to the target model's hidden states, which could otherwise lead to shortcut learning when training solely on target model outputs.


a797c2d2e0c1fdabf4d1ab8cd0b465c6-Paper-Conference.pdf

Neural Information Processing Systems

Reinforcement Learning with Verifiable Rewards (RLVR) has emerged as a powerful approach to enhancing the reasoning capabilities of Large Language Models (LLMs), while its mechanisms are not yet well understood. In this work, we undertake a pioneering exploration of RLVR through the novel perspective of token entropy patterns, comprehensively analyzing how different tokens influence reasoning performance. By examining token entropy patterns in Chain-of-Thought (CoT) reasoning, we observe that only a small fraction of tokens exhibit high entropy, and these tokens act as critical forks that steer the model toward diverse reasoning pathways. Furthermore, studying how entropy patterns evolve during RLVR training reveals that RLVR largely adheres to the base models entropy patterns, primarily adjusting the entropy of high-entropy tokens.