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Omni-DNA: AGenomic Model Supporting Sequence Understanding, Long-context, and Textual Annotation

Neural Information Processing Systems

The interpretation of genomic sequences is crucial for understanding biological processes. To handle the growing volume of DNA sequence data, Genomic Foundation Models (GFMs) have been developed by adapting architectures and training paradigms from Large Language Models (LLMs). Despite their remarkable performance in DNA sequence classification tasks, there remains a lack of systematic understanding regarding the pre-training and task-adaptation processes of GFMs. Moreover, existing GFMs cannot achieve state-of-the-art performance on both short and long-context tasks and lack multimodal abilities. By revisiting pre-training architectures and post-training techniques, we propose OMNI-DNA, a family of models spanning 20M to 1.1B parameters that supports sequence understanding, long-context genomic reasoning, and natural-language annotation. Omni-DNA establishes new state-of-the-art results on 18 of 26 evaluations drawn from Nucleotide Transformer and Genomic Benchmarks. When jointly finetuning on biologically related tasks, Omni-DNA consistently outperforms existing models and demonstrates multi-tasking abilities. Furthermore, we introduce SEQPACK, an adaptive compression mechanism that enables efficient long-context modeling by summarizing historical tokens through position-aware learnable sampling. This allows transformer-based models to process ultra-long genomic sequences with minimal memory and computational overhead.


SPARTAALIGNMENT: Collectively Aligning Multiple Language Models through Combat

Neural Information Processing Systems

We propose SPARTAALIGNMENT, an algorithm to collectively align multiple LLMs through competition and combat. To complement a single model's lack of diversity in generation and biases in evaluation, multiple LLMs form a "sparta tribe" to compete against each other in fulfilling instructions while serving as judges for the competition of others. For each iteration, one instruction and two models are selected for a duel, the other models evaluate the two responses, and their evaluation scores are aggregated through a adapted elo-ranking based reputation system, where winners/losers of combat gain/lose weight in evaluating others.


Make Information Diffusion Explainable: LLM-based Causal Framework for Diffusion Prediction

Neural Information Processing Systems

Information diffusion prediction, which aims to forecast the future infected users during the information spreading process on social platforms, is a challenging and critical task for public opinion analysis. With the development of social platforms, mass communication has become increasingly widespread. However, most existing methods based on GNNs and sequence models mainly focus on structural and temporal patterns in social networks, suffering from spurious diffusion connections and insufficient information for diffusion analysis. We leverage the strong reasoning capabilities of LLMs and develop an LLM-based causal framework for diffusion influence derivation, named MILD. By comprehensively integrating four key factors of social diffusion--i.e., connections, active timelines, user profiles, and comments--MILD causally infers authentic diffusion links to construct a diffusion influence graph, GI. To validate the quality and reliability of our constructed graph GI, we propose a newly designed set of evaluation metrics for diffusion prediction. In experiments, MILD provides a reliable information diffusion structure that achieves an absolute improvement of 12% over the social network structure and achieves state-of-the-art performance in diffusion prediction. MILD is expected to contribute to higher-quality, more explainable, and more trustworthy public opinion analysis. The code and data are available at: https://github.com/Shang-hub/


StreamBridge: Turning Your Offline Video Large Language Model into a Proactive Streaming Assistant

Neural Information Processing Systems

We present StreamBridge, a simple yet effective framework that seamlessly transforms offline Video-LLMs into streaming-capable models. It addresses two fundamental challenges in adapting existing models into online scenarios: (1) limited capability for multi-turn real-time understanding, and (2) lack of proactive response mechanisms. Specifically, StreamBridge incorporates (1) a memory buffer combined with a round-decayed compression strategy, supporting long-context multi-turn interactions, and (2) a decoupled, lightweight activation model that can be effortlessly integrated into existing Video-LLMs, enabling continuous proactive responses. To further support StreamBridge, we construct Stream-IT, a large-scale dataset tailored for streaming video understanding, featuring interleaved videotext sequences and diverse instruction formats. Extensive experiments show that StreamBridge significantly improves the streaming understanding capabilities of offline Video-LLMs across various tasks, outperforming even proprietary models such as GPT-4o and Gemini 1.5 Pro. Simultaneously, it achieves competitive or superior performance on standard video understanding benchmarks.


An 80-Year-Old Math Problem Has Just Been Solved. You Might Not Like How We Got the Answer.

Slate

Science A.I.'s First Big Math Breakthrough Is Not What It Seems But it can help us do genuinely creative work--for a reason you might not expect. Sign up for the Slatest to get the most insightful analysis, criticism, and advice out there, delivered to your inbox daily. Last month, OpenAI announced that its latest version of ChatGPT had solved a major math problem, one that had stumped experts for 80 years. This was considered among the most important unsolved problems in combinatorics, a prominent branch of math and computer science dealing with finite objects and arrangements. As opposed to previous A.I.-powered breakthroughs that involved back-and-forth conversations between a chatbot and a human expert, this was cracked with a single prompt.


LayerCraft: Enhancing Text-to-Image Generation with CoTReasoning and Layered Object Integration

Neural Information Processing Systems

Text-to-image (T2I) generation has made remarkable progress, yet existing systems still lack intuitive control over spatial composition, object consistency, and multistep editing. We present LayerCraft, a modular framework that uses large language models (LLMs) as autonomous agents to orchestrate structured, layered image generation and editing. LayerCraft supports two key capabilities: (1) structured generation from simple prompts via chain-of-thought (CoT) reasoning, enabling it to decompose scenes, reason about object placement, and guide composition in a controllable, interpretable manner; and (2) layered object integration, allowing users to insert and customize objects--such as characters or props--across diverse images or scenes while preserving identity, context, and style. The system comprises a coordinator agent, the ChainArchitect for CoT-driven layout planning, and the Object Integration Network (OIN) for seamless image editing using off-the-shelf T2I models without retraining. Through applications like batch collage editing and narrative scene generation, LayerCraft empowers non-experts to iteratively design, customize, and refine visual content with minimal manual effort.


Reinforcement Learning Finetunes Small Subnetworks in Large Language Models

Neural Information Processing Systems

Reinforcement learning (RL) yields substantial improvements in large language models' (LLMs) downstream task performance and alignment with human values. Surprisingly, such large gains result from updating only a small subnetwork comprising just 5%-30% of the parameters, with the rest effectively unchanged. We refer to this phenomenon as parameter update sparsity induced by RL. It is observed across all 7 widely-used RL algorithms (e.g., PPO, GRPO, DPO) and all 10 LLMs from different families in our experiments. This sparsity occurs without any explicit sparsity-promoting regularizations or architectural constraints.


ViDAR: Video Diffusion-Aware 4DReconstruction From Monocular Inputs

Neural Information Processing Systems

Dynamic Novel View Synthesis aims to generate photorealistic views of moving subjects from arbitrary viewpoints. This task is particularly challenging when relying on monocular video, where disentangling structure from motion is ill-posed and supervision is scarce. We introduce Video Diffusion-Aware Reconstruction (ViDAR), a novel 4D reconstruction framework that leverages personalised image diffusion models to synthesise pseudo multi-view supervision signals for training a Gaussian splatting representation. By conditioning on scene-specific features, ViDAR recovers fine-grained appearance details while mitigating artefacts introduced by monocular ambiguity. To address the spatio-temporal inconsistency of diffusion-based supervision, we propose a diffusion-aware loss function and a camera pose optimisation strategy that aligns synthetic views with the underlying scene geometry. Experiments on DyCheck, a challenging benchmark with extreme viewpoint variation, show that ViDAR outperforms all state-of-the-art baselines in visual quality and geometric consistency. We further highlight ViDAR's strong improvement over baselines on dynamic regions and provide a new benchmark to compare performance in reconstructing motion-rich parts of the scene.


bf05b8d4361c6be8e250be4b924f0e1d-Paper-Conference.pdf

Neural Information Processing Systems

Finetuning large language models (LLMs) enables user-specific customization but introduces important safety risks: even a few harmful examples can compromise safety alignment. A common mitigation strategy is to update the model more strongly on examples deemed safe, while downweighting or excluding those flagged as unsafe. However, because safety context can shift within a single example, updating the model equally on both harmful and harmless parts of a response is suboptimal -- an atomic treatment we term static safety shaping. In contrast, we propose dynamic safety shaping (DSS), a dynamic shaping framework that uses fine-grained safety signals to reinforce learning from safe segments of a response while suppressing unsafe content. To enable such fine-grained control during finetuning, we introduce a key insight: guardrail models, traditionally used for filtering, can be repurposed to evaluate partial responses, tracking how safety risk evolves throughout the response, segment by segment. This leads to the Safety Trajectory Assessment of Response (STAR), a token-level signal that enables shaping to operate dynamically over the training sequence. Building on this, we present DSS, a DSS method guided by STAR scores that robustly mitigates finetuning risks and delivers substantial safety improvements across diverse threats, datasets, and model families, all without compromising capability on intended tasks. We encourage future safety research to build on dynamic shaping principles for stronger mitigation against evolving finetuning risks.


CHOICE: Benchmarking the Remote Sensing Capabilities of Large Vision-Language Models

Neural Information Processing Systems

The rapid advancement of Large Vision-Language Models (VLMs), both generaldomain models and those specifically tailored for remote sensing, has demonstrated exceptional perception and reasoning capabilities in Earth observation tasks. However, a benchmark for systematically evaluating their capabilities in this domain is still lacking. To bridge this gap, we propose CHOICE, an extensive benchmark designed to objectively evaluate the hierarchical remote sensing capabilities of VLMs. Focusing on 2 primary capability dimensions essential to remote sensing: perception and reasoning, we further categorize 6 secondary dimensions and 23 leaf tasks to ensure a well-rounded assessment coverage. CHOICE guarantees the quality of all 10,507 problems through a rigorous process of data collection from 50 globally distributed cities, question construction, and quality control. The newly curated data and the format of multiple-choice questions with definitive answers allow for an objective and straightforward performance assessment. Our evaluation of 3 proprietary and 21 open-source VLMs highlights their critical limitations within this specialized context. We hope that CHOICE will serve as a valuable resource and offer deeper insights into the challenges and potential of VLMs in the field of remote sensing. Code and dataset are available at this https URL.