Objective: Causality mining is an active research area, which requires the application of state-of-the-art natural language processing techniques. In the healthcare domain, medical experts create clinical text to overcome the limitation of well-defined and schema driven information systems. The objective of this research work is to create a framework, which can convert clinical text into causal knowledge. Methods: A practical approach based on term expansion, phrase generation, BERT based phrase embedding and semantic matching, semantic enrichment, expert verification, and model evolution has been used to construct a comprehensive causality mining framework. This active transfer learning based framework along with its supplementary services, is able to extract and enrich, causal relationships and their corresponding entities from clinical text. Results: The multi-model transfer learning technique when applied over multiple iterations, gains performance improvements in terms of its accuracy and recall while keeping the precision constant. We also present a comparative analysis of the presented techniques with their common alternatives, which demonstrate the correctness of our approach and its ability to capture most causal relationships. Conclusion: The presented framework has provided cutting-edge results in the healthcare domain. However, the framework can be tweaked to provide causality detection in other domains, as well. Significance: The presented framework is generic enough to be utilized in any domain, healthcare services can gain massive benefits due to the voluminous and various nature of its data. This causal knowledge extraction framework can be used to summarize clinical text, create personas, discover medical knowledge, and provide evidence to clinical decision making.

This article contains a proposal to add coinduction to the computational apparatus of natural language understanding. This, we argue, will provide a basis for more realistic, computationally sound, and scalable models of natural language dialogue, syntax and semantics. Given that the bottom up, inductively constructed, semantic and syntactic structures are brittle, and seemingly incapable of adequately representing the meaning of longer sentences or realistic dialogues, natural language understanding is in need of a new foundation. Coinduction, which uses top down constraints, has been successfully used in the design of operating systems and programming languages. Moreover, implicitly it has been present in text mining, machine translation, and in some attempts to model intensionality and modalities, which provides evidence that it works. This article shows high level formalizations of some of such uses. Since coinduction and induction can coexist, they can provide a common language and a conceptual model for research in natural language understanding. In particular, such an opportunity seems to be emerging in research on compositionality. This article shows several examples of the joint appearance of induction and coinduction in natural language processing. We argue that the known individual limitations of induction and coinduction can be overcome in empirical settings by a combination of the the two methods. We see an open problem in providing a theory of their joint use.

The hyponym-hypernym relation is an essential element in the semantic network. Identifying the hypernym from a definition is an important task in natural language processing and semantic analysis. While a public dictionary such as WordNet works for common words, its application in domain-specific scenarios is limited. Existing tools for hypernym extraction either rely on specific semantic patterns or focus on the word representation, which all demonstrate certain limitations. Here we propose a method by combining both the syntactic structure in definitions given by the word's part of speech, and the bidirectional gated recurrent unit network as the learning kernel. The output can be further tuned by including other features such as a word's centrality in the hypernym cooccurrence network. The method is tested in the corpus from Wikipedia featuring definition with high regularity, and the corpus from Stack-Overflow whose definition is usually irregular. It shows enhanced performance compared with other tools in both corpora.

Knowledge base question answering (KBQA) is an important task in Natural Language Processing. Existing approaches face significant challenges including complex question understanding, necessity for reasoning, and lack of large training datasets. In this work, we propose a semantic parsing and reasoning-based Neuro-Symbolic Question Answering(NSQA) system, that leverages (1) Abstract Meaning Representation (AMR) parses for task-independent question under-standing; (2) a novel path-based approach to transform AMR parses into candidate logical queries that are aligned to the KB; (3) a neuro-symbolic reasoner called Logical Neural Net-work (LNN) that executes logical queries and reasons over KB facts to provide an answer; (4) system of systems approach,which integrates multiple, reusable modules that are trained specifically for their individual tasks (e.g. semantic parsing,entity linking, and relationship linking) and do not require end-to-end training data. NSQA achieves state-of-the-art performance on QALD-9 and LC-QuAD 1.0. NSQA's novelty lies in its modular neuro-symbolic architecture and its task-general approach to interpreting natural language questions.

Equation discovery, also known as symbolic regression, is a type of automated modeling that discovers scientific laws, expressed in the form of equations, from observed data and expert knowledge. Deterministic grammars, such as context-free grammars, have been used to limit the search spaces in equation discovery by providing hard constraints that specify which equations to consider and which not. In this paper, we propose the use of probabilistic context-free grammars in the context of equation discovery. Such grammars encode soft constraints on the space of equations, specifying a prior probability distribution on the space of possible equations. We show that probabilistic grammars can be used to elegantly and flexibly formulate the parsimony principle, that favors simpler equations, through probabilities attached to the rules in the grammars. We demonstrate that the use of probabilistic, rather than deterministic grammars, in the context of a Monte-Carlo algorithm for grammar-based equation discovery, leads to more efficient equation discovery. Finally, by specifying prior probability distributions over equation spaces, the foundations are laid for Bayesian approaches to equation discovery.

Chest radiographs are the most common diagnostic exam in emergency rooms and intensive care units today. Recently, a number of researchers have begun working on large chest X-ray datasets to develop deep learning models for recognition of a handful of coarse finding classes such as opacities, masses and nodules. In this paper, we focus on extracting and learning fine-grained labels for chest X-ray images. Specifically we develop a new method of extracting fine-grained labels from radiology reports by combining vocabulary-driven concept extraction with phrasal grouping in dependency parse trees for association of modifiers with findings. A total of 457 fine-grained labels depicting the largest spectrum of findings to date were selected and sufficiently large datasets acquired to train a new deep learning model designed for fine-grained classification. We show results that indicate a highly accurate label extraction process and a reliable learning of fine-grained labels. The resulting network, to our knowledge, is the first to recognize fine-grained descriptions of findings in images covering over nine modifiers including laterality, location, severity, size and appearance.

This is an excerpt from my master thesis titled: "Semi-supervised morphological reinflection using rectified random variables" Languages use suffixes and prefixes to convey context, stress, intonation, and grammatical meaning (like subject-verb agreement). Such suffixes and prefixes form a more general class of entities which are the meaningful sub-parts of a word; these are called as morphemes. A language's morphology refers to the rules and processes through which morphemes are combined; this allows a word to express its syntactic categories and semantic meaning. For example, in English, a verb can have three tenses: past, present, and future. These are the inflected forms' of the verb.

This paper proposes a novel neural model for the understudied task of generating text from keywords. The model takes as input a set of un-ordered keywords, and part-of-speech (POS) based template instructions. This makes it ideal for surface realization in any NLG setup. The framework is based on the encode-attend-decode paradigm, where keywords and templates are encoded first, and the decoder judiciously attends over the contexts derived from the encoded keywords and templates to generate the sentences. Training exploits weak supervision, as the model trains on a large amount of labeled data with keywords and POS based templates prepared through completely automatic means. Qualitative and quantitative performance analyses on publicly available test-data in various domains reveal our system's superiority over baselines, built using state-of-the-art neural machine translation and controllable transfer techniques. Our approach is indifferent to the order of input keywords.

Software debugging has been shown to utilize upwards of 50% of developers' time. Machine programming, the field concerned with the automation of software (and hardware) development, has recently made progress in both research and production-quality automated debugging systems. In this paper, we present ControlFlag, a system that detects possible idiosyncratic violations in software control structures. ControlFlag also suggests possible corrections in the event a true error is detected. A novelty of ControlFlag is that it is entirely self-supervised; that is, it requires no labels to learn about the potential idiosyncratic programming pattern violations. In addition to presenting ControlFlag's design, we also provide an abbreviated experimental evaluation.

Performing fact verification based on structured data is important for many real-life applications and is a challenging research problem, particularly when it involves both symbolic operations and informal inference based on language understanding. In this paper, we present a Program-enhanced Verbalization and Graph Attention Network (ProgVGAT) to integrate programs and execution into textual inference models. Specifically, a verbalization with program execution model is proposed to accumulate evidences that are embedded in operations over the tables. Built on that, we construct the graph attention verification networks, which are designed to fuse different sources of evidences from verbalized program execution, program structures, and the original statements and tables, to make the final verification decision. To support the above framework, we propose a program selection module optimized with a new training strategy based on margin loss, to produce more accurate programs, which is shown to be effective in enhancing the final verification results. Experimental results show that the proposed framework achieves the new state-of-the-art performance, a 74.4% accuracy, on the benchmark dataset TABFACT.