Principal Components Analysis~(PCA) is often used as a feature extraction procedure. Given a matrix $X \in \mathbb{R}^{n \times d}$, whose rows represent $n$ data points with respect to $d$ features, the top $k$ right singular vectors of $X$ (the so-called \textit{eigenfeatures}), are arbitrary linear combinations of all available features. The eigenfeatures are very useful in data analysis, including the regularization of linear regression. Enforcing sparsity on the eigenfeatures, i.e., forcing them to be linear combinations of only a \textit{small} number of actual features (as opposed to all available features), can promote better generalization error and improve the interpretability of the eigenfeatures. We present deterministic and randomized algorithms that construct such sparse eigenfeatures while \emph{provably} achieving in-sample performance comparable to regularized linear regression. Our algorithms are relatively simple and practically efficient, and we demonstrate their performance on several data sets.

Brain-computer interfaces (BCIs) use brain signals to convey a user's intent. Some BCI approaches begin by decoding kinematic parameters of movements from brain signals, and then proceed to using these signals, in absence of movements, to allow a user to control an output. Recent results have shown that electrocorticographic (ECoG)recordings from the surface of the brain in humans can give information about kinematic parameters (e.g., hand velocity or finger flexion). The decoding approaches in these demonstrations usually employed classical classification/regression algorithmsthat derive a linear mapping between brain signals and outputs. However, they typically only incorporate little prior information about the target kinematic parameter.

An accurate model of patient survival time can help in the treatment and care of cancer patients. The common practice of providing survival time estimates based only on population averages for the site and stage of cancer ignores many important individual differences among patients. In this paper, we propose a local regression method for learning patient-specific survival time distribution based on patient attributes such as blood tests and clinical assessments. When tested on a cohort of more than 2000 cancer patients, our method gives survival time predictions that are much more accurate than popular survival analysis models such as the Cox and Aalen regression models. Our results also show that using patient-specific attributes can reduce the prediction error on survival time by as much as 20% when compared to using cancer site and stage only.

Variational Message Passing (VMP) is an algorithmic implementation of the Variational Bayes (VB) method which applies only in the special case of conjugate exponential family models. We propose an extension to VMP, which we refer to as Non-conjugate Variational Message Passing (NCVMP) which aims to alleviate this restriction while maintaining modularity, allowing choice in how expectations are calculated, and integrating into an existing message-passing framework: Infer.NET. We demonstrate NCVMP on logistic binary and multinomial regression. In the multinomial case we introduce a novel variational bound for the softmax factor which is tighter than other commonly used bounds whilst maintaining computational tractability.

A multilinear subspace regression model based on so called latent variable decomposition isintroduced. Unlike standard regression methods which typically employ matrix (2D) data representations followed by vector subspace transformations, theproposed approach uses tensor subspace transformations to model common latent variables across both the independent and dependent data. The proposed approach aims to maximize the correlation between the so derived latent variablesand is shown to be suitable for the prediction of multidimensional dependent data from multidimensional independent data, where for the estimation of the latent variables we introduce an algorithm based on Multilinear Singular Value Decomposition (MSVD) on a specially defined cross-covariance tensor. It is next shown that in this way we are also able to unify the existing Partial Least Squares (PLS) and N-way PLS regression algorithms within the same framework. Simulations on benchmark synthetic data confirm the advantages of the proposed approach, in terms of its predictive ability and robustness, especially for small sample sizes. The potential of the proposed technique is further illustrated on a real world task of the decoding of human intracranial electrocorticogram (ECoG) from a simultaneously recorded scalp electroencephalograph (EEG).

Generalized Linear Models (GLMs) and Single Index Models (SIMs) provide powerful generalizations of linear regression, where the target variable is assumed to be a (possibly unknown) 1-dimensional function of a linear predictor. In general, these problems entail non-convex estimation procedures, and, in practice, iterative local search heuristics are often used. Kalai and Sastry (2009) provided the first provably efficient method, the \emph{Isotron} algorithm, for learning SIMs and GLMs, under the assumption that the data is in fact generated under a GLM and under certain monotonicity and Lipschitz (bounded slope) constraints. The Isotron algorithm interleaves steps of perceptron-like updates with isotonic regression (fitting a one-dimensional non-decreasing function). However, to obtain provable performance, the method requires a fresh sample every iteration. In this paper, we provide algorithms for learning GLMs and SIMs, which are both computationally and statistically efficient. We modify the isotonic regression step in Isotron to fit a Lipschitz monotonic function, and also provide an efficient $O(n \log(n))$ algorithm for this step, improving upon the previous $O(n^2)$ algorithm. We provide a brief empirical study, demonstrating the feasibility of our algorithms in practice.

This paper studies privacy preserving M-estimators using perturbed histograms. The proposed approach allows the release of a wide class of M-estimators with both differential privacy and statistical utility without knowing a priori the particular inference procedure. The performance of the proposed method is demonstrated through a careful study of the convergence rates. A practical algorithm is given and applied on a real world data set containing both continuous and categorical variables.

We introduce a Gaussian process model of functions which are additive. An additive function is one which decomposes into a sum of low-dimensional functions, each depending on only a subset of the input variables. Additive GPs generalize both Generalized Additive Models, and the standard GP models which use squared-exponential kernels. Hyperparameter learning in this model can be seen as Bayesian Hierarchical Kernel Learning (HKL). We introduce an expressive but tractable parameterization of the kernel function, which allows efficient evaluation of all input interaction terms, whose number is exponential in the input dimension. The additional structure discoverable by this model results in increased interpretability, as well as state-of-the-art predictive power in regression tasks.

In this paper we consider the task of estimating the non-zero pattern of the sparse inverse covariance matrix of a zero-mean Gaussian random vector from a set of iid samples. Note that this is also equivalent to recovering the underlying graph structure of a sparse Gaussian Markov Random Field (GMRF). We present two novel greedy approaches to solving this problem. The first estimates the non-zero covariates of the overall inverse covariance matrix using a series of global forward and backward greedy steps. The second estimates the neighborhood of each node in the graph separately, again using greedy forward and backward steps, and combines the intermediate neighborhoods to form an overall estimate. The principal contribution of this paper is a rigorous analysis of the sparsistency, or consistency in recovering the sparsity pattern of the inverse covariance matrix. Surprisingly, we show that both the local and global greedy methods learn the full structure of the model with high probability given just $O(d\log(p))$ samples, which is a \emph{significant} improvement over state of the art $\ell_1$-regularized Gaussian MLE (Graphical Lasso) that requires $O(d^2\log(p))$ samples. Moreover, the restricted eigenvalue and smoothness conditions imposed by our greedy methods are much weaker than the strong irrepresentable conditions required by the $\ell_1$-regularization based methods. We corroborate our results with extensive simulations and examples, comparing our local and global greedy methods to the $\ell_1$-regularized Gaussian MLE as well as the Neighborhood Greedy method to that of nodewise $\ell_1$-regularized linear regression (Neighborhood Lasso).

The $\ell_1$-penalized method, or the Lasso, has emerged as an important tool for the analysis of large data sets. Many important results have been obtained for the Lasso in linear regression which have led to a deeper understanding of high-dimensional statistical problems. In this article, we consider a class of weighted $\ell_1$-penalized estimators for convex loss functions of a general form, including the generalized linear models. We study the estimation, prediction, selection and sparsity properties of the weighted $\ell_1$-penalized estimator in sparse, high-dimensional settings where the number of predictors $p$ can be much larger than the sample size $n$. Adaptive Lasso is considered as a special case. A multistage method is developed to apply an adaptive Lasso recursively. We provide $\ell_q$ oracle inequalities, a general selection consistency theorem, and an upper bound on the dimension of the Lasso estimator. Important models including the linear regression, logistic regression and log-linear models are used throughout to illustrate the applications of the general results.