Regression
Towards Coupling Full-disk and Active Region-based Flare Prediction for Operational Space Weather Forecasting
Pandey, Chetraj, Ji, Anli, Angryk, Rafal A., Georgoulis, Manolis K., Aydin, Berkay
Solar flare prediction is a central problem in space weather forecasting and has captivated the attention of a wide spectrum of researchers due to recent advances in both remote sensing as well as machine learning and deep learning approaches. The experimental findings based on both machine and deep learning models reveal significant performance improvements for task specific datasets. Along with building models, the practice of deploying such models to production environments under operational settings is a more complex and often time-consuming process which is often not addressed directly in research settings. We present a set of new heuristic approaches to train and deploy an operational solar flare prediction system for $\geq$M1.0-class flares with two prediction modes: full-disk and active region-based. In full-disk mode, predictions are performed on full-disk line-of-sight magnetograms using deep learning models whereas in active region-based models, predictions are issued for each active region individually using multivariate time series data instances. The outputs from individual active region forecasts and full-disk predictors are combined to a final full-disk prediction result with a meta-model. We utilized an equal weighted average ensemble of two base learners' flare probabilities as our baseline meta learner and improved the capabilities of our two base learners by training a logistic regression model. The major findings of this study are: (i) We successfully coupled two heterogeneous flare prediction models trained with different datasets and model architecture to predict a full-disk flare probability for next 24 hours, (ii) Our proposed ensembling model, i.e., logistic regression, improves on the predictive performance of two base learners and the baseline meta learner measured in terms of two widely used metrics True Skill Statistic (TSS) and Heidke Skill core (HSS), and (iii) Our result analysis suggests that the logistic regression-based ensemble (Meta-FP) improves on the full-disk model (base learner) by $\sim9\%$ in terms TSS and $\sim10\%$ in terms of HSS. Similarly, it improves on the AR-based model (base learner) by $\sim17\%$ and $\sim20\%$ in terms of TSS and HSS respectively. Finally, when compared to the baseline meta model, it improves on TSS by $\sim10\%$ and HSS by $\sim15\%$.
Regressing Relative Fine-Grained Change for Sub-Groups in Unreliable Heterogeneous Data Through Deep Multi-Task Metric Learning
Mahony, Niall O', Campbell, Sean, Krpalkova, Lenka, Walsh, Joseph, Riordan, Daniel
Fine-Grained Change Detection and Regression Analysis are essential in many applications of ArtificialIntelligence. In practice, this task is often challenging owing to the lack of reliable ground truth information andcomplexity arising from interactions between the many underlying factors affecting a system. Therefore,developing a framework which can represent the relatedness and reliability of multiple sources of informationbecomes critical. In this paper, we investigate how techniques in multi-task metric learning can be applied for theregression of fine-grained change in real data.The key idea is that if we incorporate the incremental change in a metric of interest between specific instancesof an individual object as one of the tasks in a multi-task metric learning framework, then interpreting thatdimension will allow the user to be alerted to fine-grained change invariant to what the overall metric isgeneralised to be. The techniques investigated are specifically tailored for handling heterogeneous data sources,i.e. the input data for each of the tasks might contain missing values, the scale and resolution of the values is notconsistent across tasks and the data contains non-independent and identically distributed (non-IID) instances. Wepresent the results of our initial experimental implementations of this idea and discuss related research in thisdomain which may offer direction for further research.
Linear Regression in Python
This tutorial will focus on two main broad topics that are Simple Linear Regression and Multiple Linear regression. Throughout the tutorial, key points are illustrated with clear, step-by-step examples for better understanding. By the end of the tutorial, you will be able to compute all of the essential outputs for simple linear regression and multiple regression. Most important, you will be able to correctly interpret the outputs you produce. Linear regression is a common Statistical Data Analysis technique that is widely being used.
#002 Machine Learning - Linear Regression Models - Master Data Science 18.07.2022
Highlights: Welcome back to the all-new series on Machine Learning. In the previous post, we gave you a sneak peak into the basics of Machine Learning, the two types of Machine Learning, viz., Supervised & Unsupervised, and implemented some examples using various algorithms in each of the techniques. In this new tutorial post, we will explore one of the most widely used Supervised Learning algorithms in the world today โ Linear Regression. We will start off with some theory and go on to build a simple model in Python, from scratch. In our previous post (also the first post of this Machine Learning tutorial series), we brushed the fundamentals of Linear Regression using the example of housing price prediction, given the size of the house. If you remember, the prediction was based on the linear relationship that existed between the house price and the size of the house. Have a look at the image below. In the graph above, the size of the house is shown along the horizontal axis and the price of a house is shown along the vertical axis. Here, each data point is a house with its respective size and the price that the house was recently sold for.
Identifying tumor cells at the single-cell level using machine learning - Genome Biology
Cancer is a disease that stems from the disruption of cellular state. Through genetic perturbations, tumor cells attain cellular states that give them proliferative advantage over the surrounding normal tissue [1]. The inherent variability of this process has hampered efforts to find highly effective common therapies, thereby ushering the need for precision medicine [2]. The scale of single-cell experiments is poised to revolutionize personalized medicine by effective characterization of the complete heterogeneity within a tumor for each individual patient [3, 4]. Recent expansion of single-cell sequencing technologies has exponentially increased the scale of knowledge attainable through a single biological experiment [5].
System Norm Regularization Methods for Koopman Operator Approximation
Dahdah, Steven, Forbes, James Richard
Approximating the Koopman operator from data is numerically challenging when many lifting functions are considered. Even low-dimensional systems can yield unstable or ill-conditioned results in a high-dimensional lifted space. In this paper, Extended Dynamic Mode Decomposition (DMD) and DMD with control, two methods for approximating the Koopman operator, are reformulated as convex optimization problems with linear matrix inequality constraints. Asymptotic stability constraints and system norm regularizers are then incorporated as methods to improve the numerical conditioning of the Koopman operator. Specifically, the H-infinity norm is used to penalize the input-output gain of the Koopman system. Weighting functions are then applied to penalize the system gain at specific frequencies. These constraints and regularizers introduce bilinear matrix inequality constraints to the regression problem, which are handled by solving a sequence of convex optimization problems. Experimental results using data from an aircraft fatigue structural test rig and a soft robot arm highlight the advantages of the proposed regression methods.
Copulaboost: additive modeling with copula-based model components
Brant, Simon Boge, Haff, Ingrid Hobรฆk
We propose a type of generalised additive models with of model components based on pair-copula constructions, with prediction as a main aim. The model components are designed such that our model may capture potentially complex interaction effects in the relationship between the response covariates. In addition, our model does not require discretisation of continuous covariates, and is therefore suitable for problems with many such covariates. Further, we have designed a fitting algorithm inspired by gradient boosting, as well as efficient procedures for model selection and evaluation of the model components, through constraints on the model space and approximations, that speed up time-costly computations. In addition to being absolutely necessary for our model to be a realistic alternative in higher dimensions, these techniques may also be useful as a basis for designing efficient models selection algorithms for other types of copula regression models. We have explored the characteristics of our method in a simulation study, in particular comparing it to natural alternatives, such as logic regression, classic boosting models and penalised logistic regression. We have also illustrated our approach on the Wisconsin breast cancer dataset and on the Boston housing dataset. The results show that our method has a prediction performance that is either better than or comparable to the other methods, even when the proportion of discrete covariates is high.
A review on longitudinal data analysis with random forest in precision medicine
Hu, Jianchang, Szymczak, Silke
Precision medicine provides customized treatments to patients based on their characteristics and is a promising approach to improving treatment efficiency. Large scale omics data are useful for patient characterization, but often their measurements change over time, leading to longitudinal data. Random forest is one of the state-of-the-art machine learning methods for building prediction models, and can play a crucial role in precision medicine. In this paper, we review extensions of the standard random forest method for the purpose of longitudinal data analysis. Extension methods are categorized according to the data structures for which they are designed. We consider both univariate and multivariate responses and further categorize the repeated measurements according to whether the time effect is relevant. Information of available software implementations of the reviewed extensions is also given. We conclude with discussions on the limitations of our review and some future research directions.
EFI: A Toolbox for Feature Importance Fusion and Interpretation in Python
Kumar, Aayush, Mase, Jimiama Mafeni, Rengasamy, Divish, Rothwell, Benjamin, Torres, Mercedes Torres, Winkler, David A., Figueredo, Grazziela P.
This paper presents an open-source Python toolbox called Ensemble Feature Importance (EFI) to provide machine learning (ML) researchers, domain experts, and decision makers with robust and accurate feature importance quantification and more reliable mechanistic interpretation of feature importance for prediction problems using fuzzy sets. The toolkit was developed to address uncertainties in feature importance quantification and lack of trustworthy feature importance interpretation due to the diverse availability of machine learning algorithms, feature importance calculation methods, and dataset dependencies. EFI merges results from multiple machine learning models with different feature importance calculation approaches using data bootstrapping and decision fusion techniques, such as mean, majority voting and fuzzy logic. The main attributes of the EFI toolbox are: (i) automatic optimisation of ML algorithms, (ii) automatic computation of a set of feature importance coefficients from optimised ML algorithms and feature importance calculation techniques, (iii) automatic aggregation of importance coefficients using multiple decision fusion techniques, and (iv) fuzzy membership functions that show the importance of each feature to the prediction task. The key modules and functions of the toolbox are described, and a simple example of their application is presented using the popular Iris dataset.
Learn Linear Regression ForMachine Learning
Machine learning allows an algorithm to become more accurate at predicting outcomes without being explicitly programmed to do so. Predicting is one of the things that ML can do but actually, you can do much more cool stuff with it too and once you go deep into it you'll learn all about it. You can Read My Machine Learning Posts Here. So until now, we've done a lot of things with data. We've handled missing values, handled string data and we'll learn to do much more cool stuff in the future.