Sparse principal component analysis (PCA) is an important technique for dimensionality reduction of high-dimensional data. However, most existing sparse PCA algorithms are based on non-convex optimization, which provide little guarantee on the global convergence. Sparse PCA algorithms based on a convex formulation, for example the Fantope projection and selection (FPS), overcome this difficulty, but are computationally expensive. In this work we study sparse PCA based on the convex FPS formulation, and propose a new algorithm that is computationally efficient and applicable to large and high-dimensional data sets. Nonasymptotic and explicit bounds are derived for both the optimization error and the statistical accuracy, which can be used for testing and inference problems. We also extend our algorithm to online learning problems, where data are obtained in a streaming fashion. The proposed algorithm is applied to high-dimensional gene expression data for the detection of functional gene groups.

Outlier based Robust Principal Component Analysis (RPCA) requires centering of the non-outliers. We show a "bias trick" that automatically centers these non-outliers. Using this bias trick we obtain the first RPCA algorithm that is optimal with respect to centering.

Samuele Battaglino and Erdem Koyuncu † Abstract --Conventional principal component analysis (PCA) finds a principal vector that maximizes the sum of second powers of principal components. We consider a generalized PCA that aims at maximizing the sum of an arbitrary convex function of principal components. We present a gradient ascent algorithm to solve the problem. For the kernel version of generalized PCA, we show that the solutions can be obtained as fixed points of a simple single-layer recurrent neural network. We also evaluate our algorithms on different datasets. I NTRODUCTION A. Conventional Principal Component Analysis (PCA) PCA and variant methods are dimension reduction techniques that rely on orthogonal transformations [1]-[3].

Principal Component Analysis or PCA is a widely used technique for dimensionality reduction of the large data set. Reducing the number of components or features costs some accuracy and on the other hand, it makes the large data set simpler, easy to explore and visualize. Also, it reduces the computational complexity of the model which makes machine learning algorithms run faster. It is always a question and debatable how much accuracy it is sacrificing to get less complex and reduced dimensions data set. In this article, we will be discussing the step by step approach to achieve dimensionality reduction using PCA and then I will also show how can we do all this using python library.

Time delay estimation (TDE) is a critical and challenging step in all ultrasound elastography methods. A growing number of TDE techniques require an approximate but robust and fast method to initialize solving for TDE. Herein, we present a fast method for calculating an approximate TDE between two radio frequency (RF) frames of ultrasound. Although this approximate TDE can be useful for several algorithms, we focus on GLobal Ultrasound Elastography (GLUE), which currently relies on Dynamic Programming (DP) to provide this approximate TDE. We exploit Principal Component Analysis (PCA) to find the general modes of deformation in quasi-static elastography, and therefore call our method PCA-GLUE. PCA-GLUE is a data-driven approach that learns a set of TDE principal components from a training database in real experiments. In the test phase, TDE is approximated as a weighted sum of these principal components. Our algorithm robustly estimates the weights from sparse feature matches, then passes the resulting displacement field to GLUE as initial estimates to perform a more accurate displacement estimation. PCA-GLUE is more than ten times faster than DP in estimation of the initial displacement field and yields similar results.

The flourishing assessments of fairness measure in machine learning algorithms have shown that dimension reduction methods such as PCA treat data from different sensitive groups unfairly. In particular, by aggregating data of different groups, the reconstruction error of the learned subspace becomes biased towards some populations that might hurt or benefit those groups inherently, leading to an unfair representation. On the other hand, alleviating the bias to protect sensitive groups in learning the optimal projection, would lead to a higher reconstruction error overall. This introduces a trade-off between sensitive groups' sacrifices and benefits, and the overall reconstruction error. In this paper, in pursuit of achieving fairness criteria in PCA, we introduce a more efficient notion of Pareto fairness, cast the Pareto fair dimensionality reduction as a multi-objective optimization problem, and propose an adaptive gradient-based algorithm to solve it. Using the notion of Pareto optimality, we can guarantee that the solution of our proposed algorithm belongs to the Pareto frontier for all groups, which achieves the optimal trade-off between those aforementioned conflicting objectives. This framework can be efficiently generalized to multiple group sensitive features, as well. We provide convergence analysis of our algorithm for both convex and non-convex objectives and show its efficacy through empirical studies on different datasets, in comparison with the state-of-the-art algorithm.

This paper extends robust principal component analysis (RPCA) to nonlinear manifolds. Suppose that the observed data matrix is the sum of a sparse component and a component drawn from some low dimensional manifold. Is it possible to separate them by using similar ideas as RPCA? Is there any benefit in treating the manifold as a whole as opposed to treating each local region independently? We answer these two questions affirmatively by proposing and analyzing an optimization framework that separates the sparse component from the manifold under noisy data. Theoretical error bounds are provided when the tangent spaces of the manifold satisfy certain incoherence conditions. We also provide a near optimal choice of the tuning parameters for the proposed optimization formulation with the help of a new curvature estimation method. The efficacy of our method is demonstrated on both synthetic and real datasets.

Principal component analysis (PCA) is recognised as a quintessential data analysis technique when it comes to describing linear relationships between the features of a dataset. However, the well-known sensitivity of PCA to non-Gaussian samples and/or outliers often makes it unreliable in practice. To this end, a robust formulation of PCA is derived based on the maximum correntropy criterion (MCC) so as to maximise the expected likelihood of Gaussian distributed reconstruction errors. In this way, the proposed solution reduces to a generalised power iteration, whereby: (i) robust estimates of the principal components are obtained even in the presence of outliers; (ii) the number of principal components need not be specified in advance; and (iii) the entire set of principal components can be obtained, unlike existing approaches. The advantages of the proposed maximum correntropy power iteration (MCPI) are demonstrated through an intuitive numerical example.

In a previous article, we've shown that a covariance matrix plot can be used for feature selection and dimensionality reduction: Feature Selection and Dimensionality Reduction Using Covariance Matrix Plot. We, therefore, were able to reduce the dimension of our feature space from 6 to 4. Now suppose we want to build a model on the new feature space for predicting the crew variable. Looking at the covariance matrix plot between features, we see that there is a strong correlation between the features (predictor variables), see the image above. In this article, we shall use a technique called Principal Component Analysis (PCA) to transform our features into space where the features are independent or uncorrelated. We shall then train our model on the PCA space.