Probabilistic principal component analysis (PPCA) is currently one of the most used statistical tools to reduce the ambient dimension of the data. From multidimensional scaling to the imputation of missing data, PPCA has a broad spectrum of applications ranging from science and engineering to quantitative finance.\Despite

We introduce robust principal component analysis from a data matrix in which the entries of its columns have been corrupted by permutations, termed Unlabeled Principal Component Analysis (UPCA). Using algebraic geometry, we establish that UPCA is a well-defined algebraic problem in the sense that the only matrices of minimal rank that agree with the given data are row-permutations of the ground-truth matrix, arising as the unique solutions of a polynomial system of equations. Further, we propose an efficient two-stage algorithmic pipeline for UPCA suitable for the practically relevant case where only a fraction of the data have been permuted. Stage-I employs outlier-robust PCA methods to estimate the ground-truth column-space. Equipped with the column-space, Stage-II applies recent methods for unlabeled sensing to restore the permuted data. Experiments on synthetic data, face images, educational and medical records reveal the potential of UPCA for applications such as data privatization and record linkage.

Fair Principal Component Analysis (PCA) is a problem setting where we aim to perform PCA while making the resulting representation fair in that the projected distributions, conditional on the sensitive attributes, match one another. However, existing approaches to fair PCA have two main problems: theoretically, there has been no statistical foundation of fair PCA in terms of learnability; practically, limited memory prevents us from using existing approaches, as they explicitly rely on full access to the entire data. On the theoretical side, we rigorously formulate fair PCA using a new notion called probably approximately fair and optimal (PAFO) learnability. On the practical side, motivated by recent advances in streaming algorithms for addressing memory limitation, we propose a new setting called fair streaming PCA along with a memory-efficient algorithm, fair noisy power method (FNPM). We then provide its statistical guarantee in terms of PAFO-learnability, which is the first of its kind in fair PCA literature. We verify our algorithm in the CelebA dataset without any pre-processing; while the existing approaches are inapplicable due to memory limitations, by turning it into a streaming setting, we show that our algorithm performs fair PCA efficiently and effectively.

We study efficient distributed algorithms for the fundamental problem of principal component analysis and leading eigenvector computation on the sphere, when the data are randomly distributed among a set of computational nodes. We propose a new quantized variant of Riemannian gradient descent to solve this problem, and prove that the algorithm converges with high probability under a set of necessary spherical-convexity properties. We give bounds on the number of bits transmitted by the algorithm under common initialization schemes, and investigate the dependency on the problem dimension in each case.

Abstract--Principal Component Analysis (PCA) and K-means constitute fundamental techniques in multivariate analysis. Although they are frequently applied independently or sequentially to cluster observations, the relationship between them, especially when K-means is used to cluster variables rather than observations, has been scarcely explored. This study seeks to address this gap by proposing an innovative method that analyzes the relationship between clusters of variables obtained by applying K-means on transposed data and the principal components of PCA. Our approach involves applying PCA to the original data and K-means to the transposed data set, where the original variables are converted into observations. The contribution of each variable cluster to each principal component is then quantified using measures based on variable loadings. This process provides a tool to explore and understand the clustering of variables and how such clusters contribute to the principal dimensions of variation identified by PCA. We analyze multiple data sets with varying variability structures (USArrests, Iris, Decathlon2) to show that the correspondence between clusters of variables and principal components depends on the data's inherent structure.

Given a matrix of observed data, Principal Components Analysis (PCA) computes a small number of orthogonal directions that contain most of its variability. Provably accurate solutions for PCA have been in use for a long time. However, to the best of our knowledge, all existing theoretical guarantees for it assume that the data and the corrupting noise are mutually independent, or at least uncorrelated. This is valid in practice often, but not always. In this paper, we study the PCA problem in the setting where the data and noise can be correlated. Such noise is often also referred to as ``data-dependent noise. We obtain a correctness result for the standard eigenvalue decomposition (EVD) based solution to PCA under simple assumptions on the data-noise correlation. We also develop and analyze a generalization of EVD, cluster-EVD, that improves upon EVD in certain regimes.

Given a matrix of observed data, Principal Components Analysis (PCA) computes a small number of orthogonal directions that contain most of its variability. Provably accurate solutions for PCA have been in use for a long time. However, to the best of our knowledge, all existing theoretical guarantees for it assume that the data and the corrupting noise are mutually independent, or at least uncorrelated. This is valid in practice often, but not always. In this paper, we study the PCA problem in the setting where the data and noise can be correlated. Such noise is often also referred to as "data-dependent noise". We obtain a correctness result for the standard eigenvalue decomposition (EVD) based solution to PCA under simple assumptions on the data-noise correlation. We also develop and analyze a generalization of EVD, cluster-EVD, that improves upon EVD in certain regimes.

ABSTRACT Principal component analysis (PCA) is a fundamental technique for dimensionality reduction and denoising; however, its application to three-dimensional data with arbitrary orientations--common in structural biology--presents significant challenges. A naive approach requires augmenting the dataset with many rotated copies of each sample, incurring prohibitive computational costs. In this paper, we extend PCA to 3D volumetric datasets with unknown orientations by developing an efficient and principled framework for SO(3)-invariant PCA that implicitly accounts for all rotations without explicit data augmentation. By exploiting underlying algebraic structure, we demonstrate that the computation involves only the square root of the total number of covariance entries, resulting in a substantial reduction in complexity. Index T erms-- steerable PCA, group invariants, 3D volumes, cryo-EM, spherical Bessel, ball harmonics 1. INTRODUCTION Principal component analysis (PCA) is a fundamental technique in data science and statistics, especially when dealing with high-dimensional datasets.

The remarkable success of transformers in sequence modeling tasks, spanning various applications in natural language processing and computer vision, is attributed to the critical role of self-attention.

Robust Principal Component Analysis (RPCA) aims to recover a low-rank structure from noisy, partially observed data that is also corrupted by sparse, potentially large-magnitude outliers. Traditional RPCA models rely on convex relaxations, such as nuclear norm and $\ell_1$ norm, to approximate the rank of a matrix and the $\ell_0$ functional (the number of non-zero elements) of another. In this work, we advocate a nonconvex regularization method, referred to as transformed $\ell_1$ (TL1), to improve both approximations. The rationale is that by varying the internal parameter of TL1, its behavior asymptotically approaches either $\ell_0$ or $\ell_1$. Since the rank is equal to the number of non-zero singular values and the nuclear norm is defined as their sum, applying TL1 to the singular values can approximate either the rank or the nuclear norm, depending on its internal parameter. We conduct a fine-grained theoretical analysis of statistical convergence rates, measured in the Frobenius norm, for both the low-rank and sparse components under general sampling schemes. These rates are comparable to those of the classical RPCA model based on the nuclear norm and $\ell_1$ norm. Moreover, we establish constant-order upper bounds on the estimated rank of the low-rank component and the cardinality of the sparse component in the regime where TL1 behaves like $\ell_0$, assuming that the respective matrices are exactly low-rank and exactly sparse. Extensive numerical experiments on synthetic data and real-world applications demonstrate that the proposed approach achieves higher accuracy than the classic convex model, especially under non-uniform sampling schemes.