Performance Analysis
Exploiting Liver CT scans in Colorectal Carcinoma genomics mutation classification
Perlo, Daniele, Berton, Luca, Delpiano, Alessia, Menchini, Francesca, Tibaldi, Stefano, Grosso, Marco, Fonio, Paolo
The liver is the most involved organ by distant metastasis in colon-rectal cancer (CRC) patients and it comes necessary to be aware of the mutational status of the lesions to correctly design the best individual treatment. So far, efforts have been made in order to develop non-invasive and real-time methods that permit the analysis of the whole tumor, using new artificial intelligence tools to analyze the tumor's image obtained by Computed Tomography (CT) scan. In order to address the current medical workflow, that is biopsy analysis-based, we propose the first DeepLearning-based exploration, to our knowledge, of such classification approach from the patient medical imaging. We propose i) a solid pipeline for managing undersized datasets of available CT scans and ii) a baseline study for genomics mutation diagnosis support for preemptive patient follow-up. Our method is able to identify CRC RAS mutation family from CT images with 0.73 F1 score.
Alleviating Structural Distribution Shift in Graph Anomaly Detection
Gao, Yuan, Wang, Xiang, He, Xiangnan, Liu, Zhenguang, Feng, Huamin, Zhang, Yongdong
Graph anomaly detection (GAD) is a challenging binary classification problem due to its different structural distribution between anomalies and normal nodes -- abnormal nodes are a minority, therefore holding high heterophily and low homophily compared to normal nodes. Furthermore, due to various time factors and the annotation preferences of human experts, the heterophily and homophily can change across training and testing data, which is called structural distribution shift (SDS) in this paper. The mainstream methods are built on graph neural networks (GNNs), benefiting the classification of normals from aggregating homophilous neighbors, yet ignoring the SDS issue for anomalies and suffering from poor generalization. This work solves the problem from a feature view. We observe that the degree of SDS varies between anomalies and normal nodes. Hence to address the issue, the key lies in resisting high heterophily for anomalies meanwhile benefiting the learning of normals from homophily. We tease out the anomaly features on which we constrain to mitigate the effect of heterophilous neighbors and make them invariant. We term our proposed framework as Graph Decomposition Network (GDN). Extensive experiments are conducted on two benchmark datasets, and the proposed framework achieves a remarkable performance boost in GAD, especially in an SDS environment where anomalies have largely different structural distribution across training and testing environments. Codes are open-sourced in https://github.com/blacksingular/wsdm_GDN.
McUDI: Model-Centric Unsupervised Degradation Indicator for Failure Prediction AIOps Solutions
Poenaru-Olaru, Lorena, Cruz, Luis, Rellermeyer, Jan, van Deursen, Arie
Due to the continuous change in operational data, AIOps solutions suffer from performance degradation over time. Although periodic retraining is the state-of-the-art technique to preserve the failure prediction AIOps models' performance over time, this technique requires a considerable amount of labeled data to retrain. In AIOps obtaining label data is expensive since it requires the availability of domain experts to intensively annotate it. In this paper, we present McUDI, a model-centric unsupervised degradation indicator that is capable of detecting the exact moment the AIOps model requires retraining as a result of changes in data. We further show how employing McUDI in the maintenance pipeline of AIOps solutions can reduce the number of samples that require annotations with 30k for job failure prediction and 260k for disk failure prediction while achieving similar performance with periodic retraining.
Ta'keed: The First Generative Fact-Checking System for Arabic Claims
Althabiti, Saud, Alsalka, Mohammad Ammar, Atwell, Eric
This paper introduces Ta'keed, an explainable Arabic automatic fact-checking system. While existing research often focuses on classifying claims as "True" or "False," there is a limited exploration of generating explanations for claim credibility, particularly in Arabic. Ta'keed addresses this gap by assessing claim truthfulness based on retrieved snippets, utilizing two main components: information retrieval and LLM-based claim verification. We compiled the ArFactEx, a testing gold-labelled dataset with manually justified references, to evaluate the system. The initial model achieved a promising F1 score of 0.72 in the classification task. Meanwhile, the system's generated explanations are compared with gold-standard explanations syntactically and semantically. The study recommends evaluating using semantic similarities, resulting in an average cosine similarity score of 0.76. Additionally, we explored the impact of varying snippet quantities on claim classification accuracy, revealing a potential correlation, with the model using the top seven hits outperforming others with an F1 score of 0.77.
ConstraintChecker: A Plugin for Large Language Models to Reason on Commonsense Knowledge Bases
Do, Quyet V., Fang, Tianqing, Diao, Shizhe, Wang, Zhaowei, Song, Yangqiu
Reasoning over Commonsense Knowledge Bases (CSKB), i.e. CSKB reasoning, has been explored as a way to acquire new commonsense knowledge based on reference knowledge in the original CSKBs and external prior knowledge. Despite the advancement of Large Language Models (LLM) and prompt engineering techniques in various reasoning tasks, they still struggle to deal with CSKB reasoning. One of the problems is that it is hard for them to acquire explicit relational constraints in CSKBs from only in-context exemplars, due to a lack of symbolic reasoning capabilities (Bengio et al., 2021). To this end, we proposed **ConstraintChecker**, a plugin over prompting techniques to provide and check explicit constraints. When considering a new knowledge instance, ConstraintChecker employs a rule-based module to produce a list of constraints, then it uses a zero-shot learning module to check whether this knowledge instance satisfies all constraints. The acquired constraint-checking result is then aggregated with the output of the main prompting technique to produce the final output. Experimental results on CSKB Reasoning benchmarks demonstrate the effectiveness of our method by bringing consistent improvements over all prompting methods. Codes and data are available at \url{https://github.com/HKUST-KnowComp/ConstraintChecker}.
Evaluating the Determinants of Mode Choice Using Statistical and Machine Learning Techniques in the Indian Megacity of Bengaluru
Ghosh, Tanmay, Nagaraj, Nithin
The decision making involved behind the mode choice is critical for transportation planning. While statistical learning techniques like discrete choice models have been used traditionally, machine learning (ML) models have gained traction recently among the transportation planners due to their higher predictive performance. However, the black box nature of ML models pose significant interpretability challenges, limiting their practical application in decision and policy making. This study utilised a dataset of $1350$ households belonging to low and low-middle income bracket in the city of Bengaluru to investigate mode choice decision making behaviour using Multinomial logit model and ML classifiers like decision trees, random forests, extreme gradient boosting and support vector machines. In terms of accuracy, random forest model performed the best ($0.788$ on training data and $0.605$ on testing data) compared to all the other models. This research has adopted modern interpretability techniques like feature importance and individual conditional expectation plots to explain the decision making behaviour using ML models. A higher travel costs significantly reduce the predicted probability of bus usage compared to other modes (a $0.66\%$ and $0.34\%$ reduction using Random Forests and XGBoost model for $10\%$ increase in travel cost). However, reducing travel time by $10\%$ increases the preference for the metro ($0.16\%$ in Random Forests and 0.42% in XGBoost). This research augments the ongoing research on mode choice analysis using machine learning techniques, which would help in improving the understanding of the performance of these models with real-world data in terms of both accuracy and interpretability.
BootPIG: Bootstrapping Zero-shot Personalized Image Generation Capabilities in Pretrained Diffusion Models
Purushwalkam, Senthil, Gokul, Akash, Joty, Shafiq, Naik, Nikhil
Recent text-to-image generation models have demonstrated incredible success in generating images that faithfully follow input prompts. However, the requirement of using words to describe a desired concept provides limited control over the appearance of the generated concepts. In this work, we address this shortcoming by proposing an approach to enable personalization capabilities in existing text-to-image diffusion models. We propose a novel architecture (BootPIG) that allows a user to provide reference images of an object in order to guide the appearance of a concept in the generated images. The proposed BootPIG architecture makes minimal modifications to a pretrained text-to-image diffusion model and utilizes a separate UNet model to steer the generations toward the desired appearance. We introduce a training procedure that allows us to bootstrap personalization capabilities in the BootPIG architecture using data generated from pretrained text-to-image models, LLM chat agents, and image segmentation models. In contrast to existing methods that require several days of pretraining, the BootPIG architecture can be trained in approximately 1 hour. Experiments on the DreamBooth dataset demonstrate that BootPIG outperforms existing zero-shot methods while being comparable with test-time finetuning approaches. Through a user study, we validate the preference for BootPIG generations over existing methods both in maintaining fidelity to the reference object's appearance and aligning with textual prompts.
Masked Particle Modeling on Sets: Towards Self-Supervised High Energy Physics Foundation Models
Heinrich, Lukas, Golling, Tobias, Kagan, Michael, Klein, Samuel, Leigh, Matthew, Osadchy, Margarita, Raine, John Andrew
These models also represent a scale in both model size and data size that have not been addressed in HEP. In this work, we aim to take the first steps towards building such While Artificial Intelligence (AI) and Machine Learning a HEP foundation model, focusing on developing HEP (ML) are already playing a major role in the analysis of data specific SSL strategies, whilst keeping an eye on how high energy physics (HEP) data, the HEP community well such strategies may scale in the future. We propose a has yet to benefit from the self-supervised learning (SSL) masked particle modeling (MPM) scheme, akin to masked based approaches to building large foundation models language modeling (MLM) in NLP, for self-supervised (FM) [1] that have been pioneered in natural language learning on unlabeled data consisting of sets of particles processing (NLP) [2-5] and computer vision (CV) [6-8]. in a collider physics environment. In doing so, we propose These modern approaches use SSL to pre-train models a novel scheme to apply masked modeling strategies to on vast data sets in order to learn generic representations unordered sets of inputs. of the data. Such models can then be efficiently finetuned with small datasets for a variety of downstream This work aims to generalize the language-inspired tasks. The self-supervised pre-training of a FM produces MLM-type training scheme to HEP scientific data. The a model that is also referred to as the "backbone", as it paradigm involves extracting semantic meaning and understanding can serve as the information extraction component for of the whole by predicting the missing (masked) downstream models. This concept significantly expands pieces, referred to as tokens, thereby considering the collective the possibilities for learning robust and meaningful data impact of individual input elements.
Pixel-Wise Recognition for Holistic Surgical Scene Understanding
Ayobi, Nicolás, Rodríguez, Santiago, Pérez, Alejandra, Hernández, Isabela, Aparicio, Nicolás, Dessevres, Eugénie, Peña, Sebastián, Santander, Jessica, Caicedo, Juan Ignacio, Fernández, Nicolás, Arbeláez, Pablo
This paper presents the Holistic and Multi-Granular Surgical Scene Understanding of Prostatectomies (GraSP) dataset, a curated benchmark that models surgical scene understanding as a hierarchy of complementary tasks with varying levels of granularity. Our approach enables a multi-level comprehension of surgical activities, encompassing long-term tasks such as surgical phases and steps recognition and short-term tasks including surgical instrument segmentation and atomic visual actions detection. To exploit our proposed benchmark, we introduce the Transformers for Actions, Phases, Steps, and Instrument Segmentation (TAPIS) model, a general architecture that combines a global video feature extractor with localized region proposals from an instrument segmentation model to tackle the multi-granularity of our benchmark. Through extensive experimentation, we demonstrate the impact of including segmentation annotations in short-term recognition tasks, highlight the varying granularity requirements of each task, and establish TAPIS's superiority over previously proposed baselines and conventional CNN-based models. Additionally, we validate the robustness of our method across multiple public benchmarks, confirming the reliability and applicability of our dataset. This work represents a significant step forward in Endoscopic Vision, offering a novel and comprehensive framework for future research towards a holistic understanding of surgical procedures.
TrustLLM: Trustworthiness in Large Language Models
Sun, Lichao, Huang, Yue, Wang, Haoran, Wu, Siyuan, Zhang, Qihui, Gao, Chujie, Huang, Yixin, Lyu, Wenhan, Zhang, Yixuan, Li, Xiner, Liu, Zhengliang, Liu, Yixin, Wang, Yijue, Zhang, Zhikun, Kailkhura, Bhavya, Xiong, Caiming, Xiao, Chaowei, Li, Chunyuan, Xing, Eric, Huang, Furong, Liu, Hao, Ji, Heng, Wang, Hongyi, Zhang, Huan, Yao, Huaxiu, Kellis, Manolis, Zitnik, Marinka, Jiang, Meng, Bansal, Mohit, Zou, James, Pei, Jian, Liu, Jian, Gao, Jianfeng, Han, Jiawei, Zhao, Jieyu, Tang, Jiliang, Wang, Jindong, Mitchell, John, Shu, Kai, Xu, Kaidi, Chang, Kai-Wei, He, Lifang, Huang, Lifu, Backes, Michael, Gong, Neil Zhenqiang, Yu, Philip S., Chen, Pin-Yu, Gu, Quanquan, Xu, Ran, Ying, Rex, Ji, Shuiwang, Jana, Suman, Chen, Tianlong, Liu, Tianming, Zhou, Tianyi, Wang, William, Li, Xiang, Zhang, Xiangliang, Wang, Xiao, Xie, Xing, Chen, Xun, Wang, Xuyu, Liu, Yan, Ye, Yanfang, Cao, Yinzhi, Chen, Yong, Zhao, Yue
Large language models (LLMs), exemplified by ChatGPT, have gained considerable attention for their excellent natural language processing capabilities. Nonetheless, these LLMs present many challenges, particularly in the realm of trustworthiness. Therefore, ensuring the trustworthiness of LLMs emerges as an important topic. This paper introduces TrustLLM, a comprehensive study of trustworthiness in LLMs, including principles for different dimensions of trustworthiness, established benchmark, evaluation, and analysis of trustworthiness for mainstream LLMs, and discussion of open challenges and future directions. Specifically, we first propose a set of principles for trustworthy LLMs that span eight different dimensions. Based on these principles, we further establish a benchmark across six dimensions including truthfulness, safety, fairness, robustness, privacy, and machine ethics. We then present a study evaluating 16 mainstream LLMs in TrustLLM, consisting of over 30 datasets. Our findings firstly show that in general trustworthiness and utility (i.e., functional effectiveness) are positively related. Secondly, our observations reveal that proprietary LLMs generally outperform most open-source counterparts in terms of trustworthiness, raising concerns about the potential risks of widely accessible open-source LLMs. However, a few open-source LLMs come very close to proprietary ones. Thirdly, it is important to note that some LLMs may be overly calibrated towards exhibiting trustworthiness, to the extent that they compromise their utility by mistakenly treating benign prompts as harmful and consequently not responding. Finally, we emphasize the importance of ensuring transparency not only in the models themselves but also in the technologies that underpin trustworthiness. Knowing the specific trustworthy technologies that have been employed is crucial for analyzing their effectiveness.