Performance Analysis
A training regime to learn unified representations from complementary breast imaging modalities
Sharma, Umang, Park, Jungkyu, Heacock, Laura, Chopra, Sumit, Geras, Krzysztof
Full Field Digital Mammograms (FFDMs) and Digital Breast Tomosynthesis (DBT) are the two most widely used imaging modalities for breast cancer screening. Although DBT has increased cancer detection compared to FFDM, its widespread adoption in clinical practice has been slowed by increased interpretation times and a perceived decrease in the conspicuity of specific lesion types. Specifically, the non-inferiority of DBT for microcalcifications remains under debate. Due to concerns about the decrease in visual acuity, combined DBT-FFDM acquisitions remain popular, leading to overall increased exam times and radiation dosage. Enabling DBT to provide diagnostic information present in both FFDM and DBT would reduce reliance on FFDM, resulting in a reduction in both quantities. We propose a machine learning methodology that learns high-level representations leveraging the complementary diagnostic signal from both DBT and FFDM. Experiments on a large-scale data set validate our claims and show that our representations enable more accurate breast lesion detection than any DBT- or FFDM-based model.
Improving VTE Identification through Language Models from Radiology Reports: A Comparative Study of Mamba, Phi-3 Mini, and BERT
Deng, Jamie, Wu, Yusen, Yesha, Yelena, Nguyen, Phuong
Venous thromboembolism (VTE) is a critical cardiovascular condition, encompassing deep vein thrombosis (DVT) and pulmonary embolism (PE). Accurate and timely identification of VTE is essential for effective medical care. This study builds upon our previous work, which addressed VTE detection using deep learning methods for DVT and a hybrid approach combining deep learning and rule-based classification for PE. Our earlier approaches, while effective, had two major limitations: they were complex and required expert involvement for feature engineering of the rule set. To overcome these challenges, we utilize the Mamba architecture-based classifier. This model achieves remarkable results, with a 97\% accuracy and F1 score on the DVT dataset and a 98\% accuracy and F1 score on the PE dataset. In contrast to the previous hybrid method on PE identification, the Mamba classifier eliminates the need for hand-engineered rules, significantly reducing model complexity while maintaining comparable performance. Additionally, we evaluated a lightweight Large Language Model (LLM), Phi-3 Mini, in detecting VTE. While this model delivers competitive results, outperforming the baseline BERT models, it proves to be computationally intensive due to its larger parameter set. Our evaluation shows that the Mamba-based model demonstrates superior performance and efficiency in VTE identification, offering an effective solution to the limitations of previous approaches.
Optimal Symmetries in Binary Classification
Ngairangbam, Vishal S., Spannowsky, Michael
We explore the role of group symmetries in binary classification tasks, presenting a novel framework that leverages the principles of Neyman-Pearson optimality. Contrary to the common intuition that larger symmetry groups lead to improved classification performance, our findings show that selecting the appropriate group symmetries is crucial for optimising generalisation and sample efficiency. We develop a theoretical foundation for designing group equivariant neural networks that align the choice of symmetries with the underlying probability distributions of the data. Our approach provides a unified methodology for improving classification accuracy across a broad range of applications by carefully tailoring the symmetry group to the specific characteristics of the problem. Theoretical analysis and experimental results demonstrate that optimal classification performance is not always associated with the largest equivariant groups possible in the domain, even when the likelihood ratio is invariant under one of its proper subgroups, but rather with those subgroups themselves. This work offers insights and practical guidelines for constructing more effective group equivariant architectures in diverse machine-learning contexts.
Federated Fairness Analytics: Quantifying Fairness in Federated Learning
Dilley, Oscar, Parra-Ullauri, Juan Marcelo, Hussain, Rasheed, Simeonidou, Dimitra
Federated Learning (FL) is a privacy-enhancing technology for distributed ML. By training models locally and aggregating updates - a federation learns together, while bypassing centralised data collection. FL is increasingly popular in healthcare, finance and personal computing. However, it inherits fairness challenges from classical ML and introduces new ones, resulting from differences in data quality, client participation, communication constraints, aggregation methods and underlying hardware. Fairness remains an unresolved issue in FL and the community has identified an absence of succinct definitions and metrics to quantify fairness; to address this, we propose Federated Fairness Analytics - a methodology for measuring fairness. Our definition of fairness comprises four notions with novel, corresponding metrics. They are symptomatically defined and leverage techniques originating from XAI, cooperative game-theory and networking engineering. We tested a range of experimental settings, varying the FL approach, ML task and data settings. The results show that statistical heterogeneity and client participation affect fairness and fairness conscious approaches such as Ditto and q-FedAvg marginally improve fairness-performance trade-offs. Using our techniques, FL practitioners can uncover previously unobtainable insights into their system's fairness, at differing levels of granularity in order to address fairness challenges in FL. We have open-sourced our work at: https://github.com/oscardilley/federated-fairness.
The Clever Hans Effect in Unsupervised Learning
Kauffmann, Jacob, Dippel, Jonas, Ruff, Lukas, Samek, Wojciech, Mรผller, Klaus-Robert, Montavon, Grรฉgoire
Unsupervised learning has become an essential building block of AI systems. The representations it produces, e.g. in foundation models, are critical to a wide variety of downstream applications. It is therefore important to carefully examine unsupervised models to ensure not only that they produce accurate predictions, but also that these predictions are not "right for the wrong reasons", the so-called Clever Hans (CH) effect. Using specially developed Explainable AI techniques, we show for the first time that CH effects are widespread in unsupervised learning. Our empirical findings are enriched by theoretical insights, which interestingly point to inductive biases in the unsupervised learning machine as a primary source of CH effects. Overall, our work sheds light on unexplored risks associated with practical applications of unsupervised learning and suggests ways to make unsupervised learning more robust.
A Single Channel-Based Neonatal Sleep-Wake Classification using Hjorth Parameters and Improved Gradient Boosting
Arslan, Muhammad, Mubeen, Muhammad, Abbasi, Saadullah Farooq, Khan, Muhammad Shahbaz, Boulila, Wadii, Ahmad, Jawad
Sleep plays a crucial role in neonatal development. Monitoring the sleep patterns in neonates in a Neonatal Intensive Care Unit (NICU) is imperative for understanding the maturation process. While polysomnography (PSG) is considered the best practice for sleep classification, its expense and reliance on human annotation pose challenges. Existing research often relies on multichannel EEG signals; however, concerns arise regarding the vulnerability of neonates and the potential impact on their sleep quality. This paper introduces a novel approach to neonatal sleep stage classification using a single-channel gradient boosting algorithm with Hjorth features. The gradient boosting parameters are fine-tuned using random search cross-validation (randomsearchCV), achieving an accuracy of 82.35% for neonatal sleep-wake classification. Validation is conducted through 5-fold cross-validation. The proposed algorithm not only enhances existing neonatal sleep algorithms but also opens avenues for broader applications.
Advance Real-time Detection of Traffic Incidents in Highways using Vehicle Trajectory Data
A significant number of traffic crashes are secondary crashes that occur because of an earlier incident on the road. Thus, early detection of traffic incidents is crucial for road users from safety perspectives with a potential to reduce the risk of secondary crashes. The wide availability of GPS devices now-a-days gives an opportunity of tracking and recording vehicle trajectories. The objective of this study is to use vehicle trajectory data for advance real-time detection of traffic incidents on highways using machine learning-based algorithms. The study uses three days of unevenly sequenced vehicle trajectory data and traffic incident data on I-10, one of the most crash-prone highways in Louisiana. Vehicle trajectories are converted to trajectories based on virtual detector locations to maintain spatial uniformity as well as to generate historical traffic data for machine learning algorithms. Trips matched with traffic incidents on the way are separated and along with other trips with similar spatial attributes are used to build a database for modeling. Multiple machine learning algorithms such as Logistic Regression, Random Forest, Extreme Gradient Boost, and Artificial Neural Network models are used to detect a trajectory that is likely to face an incident in the downstream road section. Results suggest that the Random Forest model achieves the best performance for predicting an incident with reasonable recall value and discrimination capability.
Cognitive Networks and Performance Drive fMRI-Based State Classification Using DNN Models
Kucukosmanoglu, Murat, Garcia, Javier O., Brooks, Justin, Bansal, Kanika
Deep neural network (DNN) models have demonstrated impressive performance in various domains, yet their application in cognitive neuroscience is limited due to their lack of interpretability. In this study we employ two structurally different and complementary DNN-based models, a one-dimensional convolutional neural network (1D-CNN) and a bidirectional long short-term memory network (BiLSTM), to classify individual cognitive states from fMRI BOLD data, with a focus on understanding the cognitive underpinnings of the classification decisions. We show that despite the architectural differences, both models consistently produce a robust relationship between prediction accuracy and individual cognitive performance, such that low performance leads to poor prediction accuracy. To achieve model explainability, we used permutation techniques to calculate feature importance, allowing us to identify the most critical brain regions influencing model predictions. Across models, we found the dominance of visual networks, suggesting that task-driven state differences are primarily encoded in visual processing. Attention and control networks also showed relatively high importance, however, default mode and temporal-parietal networks demonstrated negligible contribution in differentiating cognitive states. Additionally, we observed individual trait-based effects and subtle model-specific differences, such that 1D-CNN showed slightly better overall performance, while BiLSTM showed better sensitivity for individual behavior; these initial findings require further research and robustness testing to be fully established. Our work underscores the importance of explainable DNN models in uncovering the neural mechanisms underlying cognitive state transitions, providing a foundation for future work in this domain.
When Raw Data Prevails: Are Large Language Model Embeddings Effective in Numerical Data Representation for Medical Machine Learning Applications?
Gao, Yanjun, Myers, Skatje, Chen, Shan, Dligach, Dmitriy, Miller, Timothy A, Bitterman, Danielle, Churpek, Matthew, Afshar, Majid
The introduction of Large Language Models (LLMs) has advanced data representation and analysis, bringing significant progress in their use for medical questions and answering. Despite these advancements, integrating tabular data, especially numerical data pivotal in clinical contexts, into LLM paradigms has not been thoroughly explored. In this study, we examine the effectiveness of vector representations from last hidden states of LLMs for medical diagnostics and prognostics using electronic health record (EHR) data. We compare the performance of these embeddings with that of raw numerical EHR data when used as feature inputs to traditional machine learning (ML) algorithms that excel at tabular data learning, such as eXtreme Gradient Boosting. We focus on instruction-tuned LLMs in a zero-shot setting to represent abnormal physiological data and evaluating their utilities as feature extractors to enhance ML classifiers for predicting diagnoses, length of stay, and mortality. Furthermore, we examine prompt engineering techniques on zero-shot and few-shot LLM embeddings to measure their impact comprehensively. Although findings suggest the raw data features still prevails in medical ML tasks, zero-shot LLM embeddings demonstrate competitive results, suggesting a promising avenue for future research in medical applications.
Stabilizer bootstrapping: A recipe for efficient agnostic tomography and magic estimation
Chen, Sitan, Gong, Weiyuan, Ye, Qi, Zhang, Zhihan
We study the task of agnostic tomography: given copies of an unknown $n$-qubit state $\rho$ which has fidelity $\tau$ with some state in a given class $C$, find a state which has fidelity $\ge \tau - \epsilon$ with $\rho$. We give a new framework, stabilizer bootstrapping, for designing computationally efficient protocols for this task, and use this to get new agnostic tomography protocols for the following classes: Stabilizer states: We give a protocol that runs in time $\mathrm{poly}(n,1/\epsilon)\cdot (1/\tau)^{O(\log(1/\tau))}$, answering an open question posed by Grewal, Iyer, Kretschmer, Liang [40] and Anshu and Arunachalam [6]. Previous protocols ran in time $\mathrm{exp}(\Theta(n))$ or required $\tau>\cos^2(\pi/8)$. States with stabilizer dimension $n - t$: We give a protocol that runs in time $n^3\cdot(2^t/\tau)^{O(\log(1/\epsilon))}$, extending recent work on learning quantum states prepared by circuits with few non-Clifford gates, which only applied in the realizable setting where $\tau = 1$ [30, 37, 46, 61]. Discrete product states: If $C = K^{\otimes n}$ for some $\mu$-separated discrete set $K$ of single-qubit states, we give a protocol that runs in time $(n/\mu)^{O((1 + \log (1/\tau))/\mu)}/\epsilon^2$. This strictly generalizes a prior guarantee which applied to stabilizer product states [39]. For stabilizer product states, we give a further improved protocol that runs in time $(n^2/\epsilon^2)\cdot (1/\tau)^{O(\log(1/\tau))}$. As a corollary, we give the first protocol for estimating stabilizer fidelity, a standard measure of magic for quantum states, to error $\epsilon$ in $n^3 \mathrm{quasipoly}(1/\epsilon)$ time.