Financial fraud is the cause of multi-billion dollar losses annually. Traditionally, fraud detection systems rely on rules due to their transparency and interpretability, key features in domains where decisions need to be explained. However, rule systems require significant input from domain experts to create and tune, an issue that rule induction algorithms attempt to mitigate by inferring rules directly from data. We explore the application of these algorithms to fraud detection, where rule systems are constrained to have a low false positive rate (FPR) or alert rate, by proposing RIFF, a rule induction algorithm that distills a low FPR rule set directly from decision trees. Our experiments show that the induced rules are often able to maintain or improve performance of the original models for low FPR tasks, while substantially reducing their complexity and outperforming rules hand-tuned by experts.

In recent years, there has been considerable progress in research on human activity recognition using data from wearable sensors. This technology also has potential in the context of animal welfare in livestock science. In this paper, we report on research on animal activity recognition in support of welfare monitoring. The data comes from collar-mounted accelerometer sensors worn by Holstein and Jersey calves, the objective being to detect changes in behaviour indicating sickness or stress. A key requirement in detecting changes in behaviour is to be able to classify activities into classes, such as drinking, running or walking. In Machine Learning terms, this is a time-series classification task, and in recent years, the Rocket family of methods have emerged as the state-of-the-art in this area. We have over 27 hours of labelled time-series data from 30 calves for our analysis. Using this data as a baseline, we present Rocket's performance on a 6-class classification task. Then, we compare this against the performance of 11 Deep Learning (DL) methods that have been proposed as promising methods for time-series classification. Given the success of DL in related areas, it is reasonable to expect that these methods will perform well here as well. Surprisingly, despite taking care to ensure that the DL methods are configured correctly, none of them match Rocket's performance. A possible explanation for the impressive success of Rocket is that it has the data encoding benefits of DL models in a much simpler classification framework.

This work reimplements a recent semantic bootstrapping child-language acquisition model, which was originally designed for English, and trains it to learn a new language: Hebrew. The model learns from pairs of utterances and logical forms as meaning representations, and acquires both syntax and word meanings simultaneously. The results show that the model mostly transfers to Hebrew, but that a number of factors, including the richer morphology in Hebrew, makes the learning slower and less robust. This suggests that a clear direction for future work is to enable the model to leverage the similarities between different word forms.

The increasing popularity of Artificial Intelligence in recent years has led to a surge in interest in image classification, especially in the agricultural sector. With the help of Computer Vision, Machine Learning, and Deep Learning, the sector has undergone a significant transformation, leading to the development of new techniques for crop classification in the field. Despite the extensive research on various image classification techniques, most have limitations such as low accuracy, limited use of data, and a lack of reporting model size and prediction. The most significant limitation of all is the need for model explainability. This research evaluates four different approaches for crop classification, namely traditional ML with handcrafted feature extraction methods like SIFT, ORB, and Color Histogram; Custom Designed CNN and established DL architecture like AlexNet; transfer learning on five models pre-trained using ImageNet such as EfficientNetV2, ResNet152V2, Xception, Inception-ResNetV2, MobileNetV3; and cutting-edge foundation models like YOLOv8 and DINOv2, a self-supervised Vision Transformer Model. All models performed well, but Xception outperformed all of them in terms of generalization, achieving 98% accuracy on the test data, with a model size of 80.03 MB and a prediction time of 0.0633 seconds. A key aspect of this research was the application of Explainable AI to provide the explainability of all the models. This journal presents the explainability of Xception model with LIME, SHAP, and GradCAM, ensuring transparency and trustworthiness in the models' predictions. This study highlights the importance of selecting the right model according to task-specific needs. It also underscores the important role of explainability in deploying AI in agriculture, providing insightful information to help enhance AI-driven crop management strategies.

Transcriptome foundation models (TFMs) hold great promises of deciphering the transcriptomic language that dictate diverse cell functions by self-supervised learning on large-scale single-cell gene expression data, and ultimately unraveling the complex mechanisms of human diseases. However, current TFMs treat cells as independent samples and ignore the taxonomic relationships between cell types, which are available in cell ontology graphs. We argue that effectively leveraging this ontology information during the TFM pre-training can improve learning biologically meaningful gene co-expression patterns while preserving TFM as a general purpose foundation model for downstream zero-shot and fine-tuning tasks. To this end, we present single cell, Cell-ontology guided TFM (scCello). We introduce cell-type coherence loss and ontology alignment loss, which are minimized along with the masked gene expression prediction loss during the pre-training. The novel loss component guide scCello to learn the cell-type-specific representation and the structural relation between cell types from the cell ontology graph, respectively. We pre-trained scCello on 22 million cells from CellxGene database leveraging their cell-type labels mapped to the cell ontology graph from Open Biological and Biomedical Ontology Foundry. Our TFM demonstrates competitive generalization and transferability performance over the existing TFMs on biologically important tasks including identifying novel cell types of unseen cells, prediction of cell-type-specific marker genes, and cancer drug responses.

Large language models (LLMs) have made remarkable progress in various natural language processing tasks as a benefit of their capability to comprehend and reason with factual knowledge. However, a significant amount of factual knowledge is stored in structured data, which possesses unique characteristics that differ from the unstructured texts used for pretraining. This difference can introduce imperceptible inference parameter deviations, posing challenges for LLMs in effectively utilizing and reasoning with structured data to accurately infer factual knowledge. To this end, we propose a benchmark named StructFact, to evaluate the structural reasoning capabilities of LLMs in inferring factual knowledge. StructFact comprises 8,340 factual questions encompassing various tasks, domains, timelines, and regions. This benchmark allows us to investigate the capability of LLMs across five factual tasks derived from the unique characteristics of structural facts. Extensive experiments on a set of LLMs with different training strategies reveal the limitations of current LLMs in inferring factual knowledge from structured data. We present this benchmark as a compass to navigate the strengths and weaknesses of LLMs in reasoning with structured data for knowledge-sensitive tasks, and to encourage advancements in related real-world applications. Please find our code at https://github.com/EganGu/StructFact.

Background: Data quality is vital in software analytics, particularly for machine learning (ML) applications like software defect prediction (SDP). Despite the widespread use of ML in software engineering, the effect of data quality antipatterns on these models remains underexplored. Objective: This study develops a taxonomy of ML-specific data quality antipatterns and assesses their impact on software analytics models' performance and interpretation. Methods: We identified eight types and 14 sub-types of ML-specific data quality antipatterns through a literature review. We conducted experiments to determine the prevalence of these antipatterns in SDP data (RQ1), assess how cleaning order affects model performance (RQ2), evaluate the impact of antipattern removal on performance (RQ3), and examine the consistency of interpretation from models built with different antipatterns (RQ4). Results: In our SDP case study, we identified nine antipatterns. Over 90% of these overlapped at both row and column levels, complicating cleaning prioritization and risking excessive data removal. The order of cleaning significantly impacts ML model performance, with neural networks being more resilient to cleaning order changes than simpler models like logistic regression. Antipatterns such as Tailed Distributions and Class Overlap show a statistically significant correlation with performance metrics when other antipatterns are cleaned. Models built with different antipatterns showed moderate consistency in interpretation results. Conclusion: The cleaning order of different antipatterns impacts ML model performance. Five antipatterns have a statistically significant correlation with model performance when others are cleaned. Additionally, model interpretation is moderately affected by different data quality antipatterns.

Uncertainty Quantification in Machine Learning has progressed to predicting the source of uncertainty in a prediction: Uncertainty from stochasticity in the data (aleatoric), or uncertainty from limitations of the model (epistemic). Generally, each uncertainty is evaluated in isolation, but this obscures the fact that they are often not truly disentangled. This work proposes a set of experiments to evaluate disentanglement of aleatoric and epistemic uncertainty, and uses these methods to compare two competing formulations for disentanglement (the Information Theoretic approach, and the Gaussian Logits approach). The results suggest that the Information Theoretic approach gives better disentanglement, but that either predicted source of uncertainty is still largely contaminated by the other for both methods. We conclude that with the current methods for disentangling, aleatoric and epistemic uncertainty are not reliably separated, and we provide a clear set of experimental criteria that good uncertainty disentanglement should follow.

Evolving networks are complex data structures that emerge in a wide range of systems in science and engineering. Learning expressive representations for such networks that encode their structural connectivity and temporal evolution is essential for downstream data analytics and machine learning applications. In this study, we introduce a self-supervised method for learning representations of temporal networks and employ these representations in the dynamic link prediction task. While temporal networks are typically characterized as a sequence of interactions over the continuous time domain, our study focuses on their discrete-time versions. This enables us to balance the trade-off between computational complexity and precise modeling of the interactions. We propose a recurrent message-passing neural network architecture for modeling the information flow over time-respecting paths of temporal networks. The key feature of our method is the contrastive training objective of the model, which is a combination of three loss functions: link prediction, graph reconstruction, and contrastive predictive coding losses. The contrastive predictive coding objective is implemented using infoNCE losses at both local and global scales of the input graphs. We empirically show that the additional self-supervised losses enhance the training and improve the model's performance in the dynamic link prediction task. The proposed method is tested on Enron, COLAB, and Facebook datasets and exhibits superior results compared to existing models.

To date, several methods have been developed to explain deep learning algorithms for classification tasks. Recently, an adaptation of two of such methods has been proposed to generate instance-level explainable maps in a semantic segmentation scenario, such as multiple sclerosis (MS) lesion segmentation. In the mentioned work, a 3D U-Net was trained and tested for MS lesion segmentation, yielding an F1 score of 0.7006, and a positive predictive value (PPV) of 0.6265. The distribution of values in explainable maps exposed some differences between maps of true and false positive (TP/FP) examples. Inspired by those results, we explore in this paper the use of characteristics of lesion-specific saliency maps to refine segmentation and detection scores. We generate around 21000 maps from as many TP/FP lesions in a batch of 72 patients (training set) and 4868 from the 37 patients in the test set. 93 radiomic features extracted from the first set of maps were used to train a logistic regression model and classify TP versus FP. On the test set, F1 score and PPV were improved by a large margin when compared to the initial model, reaching 0.7450 and 0.7817, with 95% confidence intervals of [0.7358, 0.7547] and [0.7679, 0.7962], respectively. These results suggest that saliency maps can be used to refine prediction scores, boosting a model's performances.