Analysis of the genome sequence of Perccottus glenii, the only fish known to possess freeze tolerance, holds significant importance for understanding how organisms adapt to extreme environments, Traditional biological analysis methods are time-consuming and have limited accuracy, To address these issues, we will employ machine learning techniques to analyze the gene sequences of Perccottus glenii, with Neodontobutis hainanens as a comparative group, Firstly, we have proposed five gene sequence vectorization methods and a method for handling ultra-long gene sequences, We conducted a comparative study on the three vectorization methods: ordinal encoding, One-Hot encoding, and K-mer encoding, to identify the optimal encoding method, Secondly, we constructed four classification models: Random Forest, LightGBM, XGBoost, and Decision Tree, The dataset used by these classification models was extracted from the National Center for Biotechnology Information database, and we vectorized the sequence matrices using the optimal encoding method, K-mer, The Random Forest model, which is the optimal model, achieved a classification accuracy of up to 99, 98 , Lastly, we utilized SHAP values to conduct an interpretable analysis of the optimal classification model, Through ten-fold cross-validation and the AUC metric, we identified the top 10 features that contribute the most to the model's classification accuracy, This demonstrates that machine learning methods can effectively replace traditional manual analysis in identifying genes associated with the freeze tolerance phenotype in Perccottus glenii.

In the current era of big data and machine learning, it's essential to find ways to shrink the size of training dataset while preserving the training performance to improve efficiency. However, the challenge behind it includes providing practical ways to find points that can be deleted without significantly harming the training result and suffering from problems like underfitting. We therefore present the perfect deleted point problem for 1-step noisy SGD in the classical linear regression task, which aims to find the perfect deleted point in the training dataset such that the model resulted from the deleted dataset will be identical to the one trained without deleting it. We apply the so-called signal-to-noise ratio and suggest that its value is closely related to the selection of the perfect deleted point. We also implement an algorithm based on this and empirically show the effectiveness of it in a synthetic dataset. Finally we analyze the consequences of the perfect deleted point, specifically how it affects the training performance and privacy budget, therefore highlighting its potential. This research underscores the importance of data deletion and calls for urgent need for more studies in this field.

In many real-world applications of machine learning, we are interested to know if it is possible to train on the data that we have gathered so far, and obtain accurate predictions on a new test data subset that is qualitatively different in some respect (time period, geographic region, etc). Another question is whether data subsets are similar enough so that it is beneficial to combine subsets during model training. We propose SOAK, Same/Other/All K-fold cross-validation, a new method which can be used to answer both questions. SOAK systematically compares models which are trained on different subsets of data, and then used for prediction on a fixed test subset, to estimate the similarity of learnable/predictable patterns in data subsets. We show results of using SOAK on six new real data sets (with geographic/temporal subsets, to check if predictions are accurate on new subsets), 3 image pair data sets (subsets are different image types, to check that we get smaller prediction error on similar images), and 11 benchmark data sets with predefined train/test splits (to check similarity of predefined splits).

Receiver Operating Characteristic (ROC) curves are useful for evaluation in binary classification and changepoint detection, but difficult to use for learning since the Area Under the Curve (AUC) is piecewise constant (gradient zero almost everywhere). Recently the Area Under Min (AUM) of false positive and false negative rates has been proposed as a differentiable surrogate for AUC. In this paper we study the piecewise linear/constant nature of the AUM/AUC, and propose new efficient path-following algorithms for choosing the learning rate which is optimal for each step of gradient descent (line search), when optimizing a linear model. Remarkably, our proposed line search algorithm has the same log-linear asymptotic time complexity as gradient descent with constant step size, but it computes a complete representation of the AUM/AUC as a function of step size. In our empirical study of binary classification problems, we verify that our proposed algorithm is fast and exact; in changepoint detection problems we show that the proposed algorithm is just as accurate as grid search, but faster.

Off-policy reinforcement learning aims to leverage experience collected from prior policies for sample-efficient learning. However, in practice, commonly used off-policy approximate dynamic programming methods based on Q-learning and actor-critic methods are highly sensitive to the data distribution, and can make only limited progress without collecting additional on-policy data. As a step towards more robust off-policy algorithms, we study the setting where the off-policy experience is fixed and there is no further interaction with the environment. We identify \emph{bootstrapping error} as a key source of instability in current methods. Bootstrapping error is due to bootstrapping from actions that lie outside of the training data distribution, and it accumulates via the Bellman backup operator.

We address the problem of non-parametric multiple model comparison: given l candidate models, decide whether each candidate is as good as the best one(s) or worse than it. We propose two statistical tests, each controlling a different notion of decision errors. The first test, building on the post selection inference framework, provably controls the number of best models that are wrongly declared worse (false positive rate). The second test is based on multiple correction, and controls the proportion of the models declared worse but are in fact as good as the best (false discovery rate). We prove that under appropriate conditions the first test can yield a higher true positive rate than the second.

We study the problem of fair binary classification using the notion of Equal Opportunity. It requires the true positive rate to distribute equally across the sensitive groups. Within this setting we show that the fair optimal classifier is obtained by recalibrating the Bayes classifier by a group-dependent threshold. We provide a constructive expression for the threshold. This result motivates us to devise a plug-in classification procedure based on both unlabeled and labeled datasets.

Heterogeneous Face Recognition (HFR) is a challenging issue because of the large domain discrepancy and a lack of heterogeneous data. This paper considers HFR as a dual generation problem, and proposes a novel Dual Variational Generation (DVG) framework. It generates large-scale new paired heterogeneous images with the same identity from noise, for the sake of reducing the domain gap of HFR. Specifically, we first introduce a dual variational autoencoder to represent a joint distribution of paired heterogeneous images. Then, in order to ensure the identity consistency of the generated paired heterogeneous images, we impose a distribution alignment in the latent space and a pairwise identity preserving in the image space. Moreover, the HFR network reduces the domain discrepancy by constraining the pairwise feature distances between the generated paired heterogeneous images.

Recent work suggests improving the performance of Bloom filter by incorporating a machine learning model as a binary classifier. However, such learned Bloom filter does not take full advantage of the predicted probability scores. We propose new algorithms that generalize the learned Bloom filter by using the complete spectrum of the score regions. We prove our algorithms have lower false positive rate (FPR) and memory usage compared with the existing approaches to learned Bloom filter. We also demonstrate the improved performance of our algorithms on real-world information filtering tasks over the web.

Many recent advances in machine learning are driven by a challenging trifecta: large data size N, high dimensions, and expensive algorithms. In this setting, cross-validation (CV) serves as an important tool for model assessment. Recent advances in approximate cross validation (ACV) provide accurate approximations to CV with only a single model fit, avoiding traditional CV's requirement for repeated runs of expensive algorithms. Unfortunately, these ACV methods can lose both speed and accuracy in high dimensions --- unless sparsity structure is present in the data. Fortunately, there is an alternative type of simplifying structure that is present in most data: approximate low rank (ALR).