Cardiovascular signals such as photoplethysmography (PPG), electrocardiography (ECG), and blood pressure (BP) are inherently correlated and complementary, together reflecting the health of cardiovascular system. However, their joint utilization in real-time monitoring is severely limited by diverse acquisition challenges from noisy wearable recordings to burdened invasive procedures. Here we propose UniCardio, a multi-modal diffusion transformer that reconstructs low-quality signals and synthesizes unrecorded signals in a unified generative framework. Its key innovations include a specialized model architecture to manage the signal modalities involved in generation tasks and a continual learning paradigm to incorporate varying modality combinations. By exploiting the complementary nature of cardiovascular signals, UniCardio clearly outperforms recent task-specific baselines in signal denoising, imputation, and translation. The generated signals match the performance of ground-truth signals in detecting abnormal health conditions and estimating vital signs, even in unseen domains, while ensuring interpretability for human experts. These advantages position UniCardio as a promising avenue for advancing AI-assisted healthcare.

Transformer models and end-to-end learning frameworks are rapidly revolutionizing the field of artificial intelligence. In this work, we apply object detection transformers to analyze charge stability diagrams in semiconductor quantum dot arrays, a key task for achieving scalability with spin-based quantum computing. Specifically, our model identifies triple points and their connectivity, which is crucial for virtual gate calibration, charge state initialization, drift correction, and pulse sequencing. We show that it surpasses convolutional neural networks in performance on three different spin qubit architectures, all without the need for retraining. In contrast to existing approaches, our method significantly reduces complexity and runtime, while enhancing generalizability. The results highlight the potential of transformer-based end-to-end learning frameworks as a foundation for a scalable, device- and architecture-agnostic tool for control and tuning of quantum dot devices.

Graphical models are a very useful tool to describe and understand natural phenomena, from gene expression to climate change and social interactions. The topological structure of these graphs/networks is a fundamental part of the analysis, and in many cases the main goal of the study. However, little work has been done on incorporating prior topological knowledge onto the estimation of the underlying graphical models from sample data. In this work we propose extensions to the basic joint regression model for network estimation, which explicitly incorporate graph-topological constraints into the corresponding optimization approach. The first proposed extension includes an eigenvector centrality constraint, thereby promoting this important prior topological property. The second developed extension promotes the formation of certain motifs, triangle-shaped ones in particular, which are known to exist for example in genetic regulatory networks. The presentation of the underlying formulations, which serve as examples of the introduction of topological constraints in network estimation, is complemented with examples in diverse datasets demonstrating the importance of incorporating such critical prior knowledge.

Then we propose a platform, coined Geom3D, which enables benchmarking the effectiveness of geometric strategies.

Feature selection and importance estimation in a model-agnostic setting is an ongoing challenge of significant interest. Wrapper methods are commonly used because they are typically model-agnostic, even though they are computationally intensive. In this paper, we focus on feature selection methods related to the Generalized Covariance Measure (GCM) and Leave-One-Covariate-Out (LOCO) estimation, and provide a comparison based on relative efficiency. In particular, we present a theoretical comparison under three model settings: linear models, non-linear additive models, and single index models that mimic a single-layer neural network. We complement this with extensive simulations and real data examples. Our theoretical results, along with empirical findings, demonstrate that GCM-related methods generally outperform LOCO under suitable regularity conditions. Furthermore, we quantify the asymptotic relative efficiency of these approaches. Our simulations and real data analysis include widely used machine learning methods such as neural networks and gradient boosting trees.

I develop an algorithm to produce the piecewise quadratic that computes leave-one-out cross-validation for the lasso as a function of its hyperparameter. The algorithm can be used to find exact hyperparameters that optimize leave-one-out cross-validation either globally or locally, and its practicality is demonstrated on real-world data sets.

Quantifying out-of-sample discrimination performance for time-to-event outcomes is a fundamental step for model evaluation and selection in the context of predictive modelling. The concordance index, or C-index, is a widely used metric for this purpose, particularly with the growing development of machine learning methods. Beyond differences between proposed C-index estimators (e.g. Harrell's, Uno's and Antolini's), we demonstrate the existence of a C-index multiverse among available R and python software, where seemingly equal implementations can yield different results. This can undermine reproducibility and complicate fair comparisons across models and studies. Key variation sources include tie handling and adjustment to censoring. Additionally, the absence of a standardised approach to summarise risk from survival distributions, result in another source of variation dependent on input types. We demonstrate the consequences of the C-index multiverse when quantifying predictive performance for several survival models (from Cox proportional hazards to recent deep learning approaches) on publicly available breast cancer data, and semi-synthetic examples. Our work emphasises the need for better reporting to improve transparency and reproducibility. This article aims to be a useful guideline, helping analysts when navigating the multiverse, providing unified documentation and highlighting potential pitfalls of existing software. All code is publicly available at: www.github.com/BBolosSierra/CindexMultiverse.

Labor shortages have severely affected the meat processing sector. Automated technology has the potential to support the meat industry, assist workers, and enhance job quality. However, existing automation in meat processing is highly specialized, inflexible, and cost intensive. Instead of forcing manufacturers to buy a separate device for each step of the process, our objective is to develop general-purpose robotic systems that work alongside humans to perform multiple meat processing tasks. Through a recently conducted survey of industry experts, we identified two main challenges associated with integrating these collaborative robots alongside human workers. First, there must be measures to ensure the safety of human coworkers; second, the coworkers need to understand what the robot is doing. This paper addresses both challenges by introducing a safety and transparency framework for general-purpose meat processing robots. For safety, we implement a hand-detection system that continuously monitors nearby humans. This system can halt the robot in situations where the human comes into close proximity of the operating robot. We also develop an instrumented knife equipped with a force sensor that can differentiate contact between objects such as meat, bone, or fixtures. For transparency, we introduce a method that detects the robot's uncertainty about its performance and uses an LED interface to communicate that uncertainty to the human. Additionally, we design a graphical interface that displays the robot's plans and allows the human to provide feedback on the planned cut. Overall, our framework can ensure safe operation while keeping human workers in-the-loop about the robot's actions which we validate through a user study.

Graph Neural Networks (GNNs) have been successful in modeling graph-structured data. However, similar to other machine learning models, GNNs can exhibit bias in predictions based on attributes like race and gender. Moreover, bias in GNNs can be exacerbated by the graph structure and message-passing mechanisms. Recent cutting-edge methods propose mitigating bias by filtering out sensitive information from input or representations, like edge dropping or feature masking. Yet, we argue that such strategies may unintentionally eliminate non-sensitive features, leading to a compromised balance between predictive accuracy and fairness. To tackle this challenge, we present a novel approach utilizing counterfactual data augmentation for bias mitigation. This method involves creating diverse neighborhoods using counterfactuals before message passing, facilitating unbiased node representations learning from the augmented graph. Subsequently, an adversarial discriminator is employed to diminish bias in predictions by conventional GNN classifiers. Our proposed technique, Fair-ICD, ensures the fairness of GNNs under moderate conditions. Experiments on standard datasets using three GNN backbones demonstrate that Fair-ICD notably enhances fairness metrics while preserving high predictive performance.