Performance Analysis
Fast Randomized Kernel Ridge Regression with Statistical Guarantees
Ahmed Alaoui, Michael W. Mahoney
One approach to improving the running time of kernel-based methods is to build a small sketch of the kernel matrix and use it in lieu of the full matrix in the machine learning task of interest. Here, we describe a version of this approach that comes with running time guarantees as well as improved guarantees on its statistical performance. By extending the notion of statistical leverage scores to the setting of kernel ridge regression, we are able to identify a sampling distribution that reduces the size of the sketch (i.e., the required number of columns to be sampled) to the effective dimensionality of the problem. This latter quantity is often much smaller than previous bounds that depend on the maximal degrees of freedom. We give an empirical evidence supporting this fact. Our second contribution is to present a fast algorithm to quickly compute coarse approximations to these scores in time linear in the number of samples.
A Theoretical details
A.2 Proof of Theorem 1 We restate the theorem for completeness: Theorem 1. Assume Any ODE's solution, if it exists and converges, converges to an's estimate of the conditional effect is We now bound the remaining term. 's computation of the surrogate intervention involved Thus, such error does not accumulate even with large step sizes. Theorem 4. Effect Connectivity is necessary for nonparametric effect estimation in Let Effect Connectivity be violated, i.e. there exists a Thus, nonparametric effect estimation is impossible. The effect threshold here is 0.1.Figure 7: True positive vs. False negative rate as we vary the threshold on average
Discriminative Robust Transformation Learning
Jiaji Huang, Qiang Qiu, Guillermo Sapiro, Robert Calderbank
This paper proposes a framework for learning features that are robust to data variation, which is particularly important when only a limited number of training samples are available. The framework makes it possible to tradeoff the discriminative value of learned features against the generalization error of the learning algorithm. Robustness is achieved by encouraging the transform that maps data to features to be a local isometry. This geometric property is shown to improve (K,null)-robustness, thereby providing theoretical justification for reductions in generalization error observed in experiments. The proposed optimization framework is used to train standard learning algorithms such as deep neural networks. Experimental results obtained on benchmark datasets, such as labeled faces in the wild, demonstrate the value of being able to balance discrimination and robustness.
Supplementary Materials A Protein Targets Chosen for Generation
Figure A.1 shows the amino acid sequences corresponding to the three SARS-CoV -2 targets. We used a bidirectional Gated Recurrent Unit (GRU) with a linear output layer as an encoder. Figure B.1: The novelty of the scaffold of each generated molecule compared to the most similar scaffold in the training set. Similarity of the fingerprints, is shown next to the scaffold of each generated molecule. We show a representative set of molecules generated for each target in Figure D.1 Figure D.1: Representative molecules generated for (top to bottom): NSP9 Replicase, Receptor-Binding Domain (RBD) of S protein, and Main Protease of SARS-CoV -2 RBD has maximum subgraph similarity to a commercially available drug Telavancin (See Figure E.3).