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Regularized Partial Least Squares with an Application to NMR Spectroscopy

arXiv.org Machine Learning

High-dimensional data common in genomics, proteomics, and chemometrics often contains complicated correlation structures. Recently, partial least squares (PLS) and Sparse PLS methods have gained attention in these areas as dimension reduction techniques in the context of supervised data analysis. We introduce a framework for Regularized PLS by solving a relaxation of the SIMPLS optimization problem with penalties on the PLS loadings vectors. Our approach enjoys many advantages including flexibility, general penalties, easy interpretation of results, and fast computation in high-dimensional settings. We also outline extensions of our methods leading to novel methods for Non-negative PLS and Generalized PLS, an adaption of PLS for structured data. We demonstrate the utility of our methods through simulations and a case study on proton Nuclear Magnetic Resonance (NMR) spectroscopy data.


Bayesian Locality Sensitive Hashing for Fast Similarity Search

arXiv.org Artificial Intelligence

Given a collection of objects and an associated similarity measure, the all-pairs similarity search problem asks us to find all pairs of objects with similarity greater than a certain user-specified threshold. Locality-sensitive hashing (LSH) based methods have become a very popular approach for this problem. However, most such methods only use LSH for the first phase of similarity search - i.e. efficient indexing for candidate generation. In this paper, we present BayesLSH, a principled Bayesian algorithm for the subsequent phase of similarity search - performing candidate pruning and similarity estimation using LSH. A simpler variant, BayesLSH-Lite, which calculates similarities exactly, is also presented. BayesLSH is able to quickly prune away a large majority of the false positive candidate pairs, leading to significant speedups over baseline approaches. For BayesLSH, we also provide probabilistic guarantees on the quality of the output, both in terms of accuracy and recall. Finally, the quality of BayesLSH's output can be easily tuned and does not require any manual setting of the number of hashes to use for similarity estimation, unlike standard approaches. For two state-of-the-art candidate generation algorithms, AllPairs and LSH, BayesLSH enables significant speedups, typically in the range 2x-20x for a wide variety of datasets.


Meditation Training and Neurofeedback Using a Personal EEG Device

AAAI Conferences

Baseline and meditation data was obtained from 31 longterm meditation practitioners using the single-sensor right Over the past several years, a host of simple consumer prefrontal EEG system produced by Neurosky, Inc. Each electroencephalography (EEG) devices have been released subject was asked to complete a 5 minute resting period in at relatively inexpensive price points. These devices allow which they were asked to close their eyes and let their single or multi-channel recording of EEG, generally mind wander (without meditating). This was followed by employing user-friendly design, e.g.


Harnessing the Crowds for Automating the Identification of Web APIs

AAAI Conferences

Supporting the efficient discovery and use of Web APIs is increasingly important as their use and popularity grows. Yet, a simple task like finding potentially interesting APIs and their related documentation turns out to be hard and time consuming even when using the best resources currently available on the Web. In this paper we describe our research towards an automated Web API documentation crawler and search engine. This paper presents two main contributions. First, we have devised and exploited crowdsourcing techniques to generate a curated dataset of Web APIs documentation. Second, thanks to this dataset, we have devised an engine able to automatically detect documentation pages. Our preliminary experiments have shown that we obtain an accuracy of 80% and a precision increase of 15 points over a keyword-based heuristic we have used as baseline.


Modeling Multiple Annotator Expertise in the Semi-Supervised Learning Scenario

arXiv.org Machine Learning

Learning algorithms normally assume that there is at most one annotation or label per data point. However, in some scenarios, such as medical diagnosis and on-line collaboration,multiple annotations may be available. In either case, obtaining labels for data points can be expensive and time-consuming (in some circumstances ground-truth may not exist). Semi-supervised learning approaches have shown that utilizing the unlabeled data is often beneficial in these cases. This paper presents a probabilistic semi-supervised model and algorithm that allows for learning from both unlabeled and labeled data in the presence of multiple annotators. We assume that it is known what annotator labeled which data points. The proposed approach produces annotator models that allow us to provide (1) estimates of the true label and (2) annotator variable expertise for both labeled and unlabeled data. We provide numerical comparisons under various scenarios and with respect to standard semi-supervised learning. Experiments showed that the presented approach provides clear advantages over multi-annotator methods that do not use the unlabeled data and over methods that do not use multi-labeler information.


Sparse-posterior Gaussian Processes for general likelihoods

arXiv.org Machine Learning

Gaussian processes (GPs) provide a probabilistic nonparametric representation of functions in regression, classification, and other problems. Unfortunately, exact learning with GPs is intractable for large datasets. A variety of approximate GP methods have been proposed that essentially map the large dataset into a small set of basis points. Among them, two state-of-the-art methods are sparse pseudo-input Gaussian process (SPGP) (Snelson and Ghahramani, 2006) and variablesigma GP (VSGP) Walder et al. (2008), which generalizes SPGP and allows each basis point to have its own length scale. However, VSGP was only derived for regression. In this paper, we propose a new sparse GP framework that uses expectation propagation to directly approximate general GP likelihoods using a sparse and smooth basis. It includes both SPGP and VSGP for regression as special cases. Plus as an EP algorithm, it inherits the ability to process data online. As a particular choice of approximating family, we blur each basis point with a Gaussian distribution that has a full covariance matrix representing the data distribution around that basis point; as a result, we can summarize local data manifold information with a small set of basis points. Our experiments demonstrate that this framework outperforms previous GP classification methods on benchmark datasets in terms of minimizing divergence to the non-sparse GP solution as well as lower misclassification rate.


Imitation learning of motor primitives and language bootstrapping in robots

arXiv.org Artificial Intelligence

Imitation learning in robots, also called programing by demonstration, has made important advances in recent years, allowing humans to teach context dependant motor skills/tasks to robots. We propose to extend the usual contexts investigated to also include acoustic linguistic expressions that might denote a given motor skill, and thus we target joint learning of the motor skills and their potential acoustic linguistic name. In addition to this, a modification of a class of existing algorithms within the imitation learning framework is made so that they can handle the unlabeled demonstration of several tasks/motor primitives without having to inform the imitator of what task is being demonstrated or what the number of tasks are, which is a necessity for language learning, i.e; if one wants to teach naturally an open number of new motor skills together with their acoustic names. Finally, a mechanism for detecting whether or not linguistic input is relevant to the task is also proposed, and our architecture also allows the robot to find the right framing for a given identified motor primitive. With these additions it becomes possible to build an imitator that bridges the gap between imitation learning and language learning by being able to learn linguistic expressions using methods from the imitation learning community. In this sense the imitator can learn a word by guessing whether a certain speech pattern present in the context means that a specific task is to be executed. The imitator is however not assumed to know that speech is relevant and has to figure this out on its own by looking at the demonstrations: indeed, the architecture allows the robot to transparently also learn tasks which should not be triggered by an acoustic word, but for example by the color or position of an object or a gesture made by someone in the environment. To demonstrate this ability to find the ...


Unsupervised Real-Time Company Name Disambiguation in Twitter

AAAI Conferences

This paper presents a new approach to disambiguate company names in the Twitter social network. We have focused on making lighter the processing of comparing company profiles with tweets in order to obtain a competitive real-time system. With this aim, we only use the home page of each company as information source to create a unique profile. On the other hand, we compute the similarity of a tweet in connection to a profile by comparing the content of the tweet with the profile. Both steps do not use any other external information source and all the process is developed in an unsupervised way. We have tested our application with the test WePS-3 CLEF ORM corpus obtaining encouraging results.


Identifying Microblogs for Targeted Contextual Advertising

AAAI Conferences

Micro-blogging sites such as Facebook, Twitter, Google+ present a nice opportunity for targeting advertisements that are contextually related to the microblog content. By virtue of the sparse and noisy text makes identifying the microblogs suitable for advertising a very hard problem. In this work, we approach the problem of identifying the microblogs that could be targeted for advertisements as a two-step classification approach. In the first pass, microblogs suitable for advertising are identified. Next, in the second pass, we build a model to find the sentiment of the advertisable microblog. The systems use features derived from the Part-of-speech tags, the tweet content and uses external resources such as query logs and n-gram dictionaries from previously labeled data.This work aims at providing a thorough insight into the problem and analyzing various features to assess which features contribute the most towards identifying the tweets that can be targeted for advertisements.


The YouTube Social Network

AAAI Conferences

Today, YouTube is the largest user-driven video content provider in the world; it has become a major platform for disseminating multimedia information. A major contribution to its success comes from the user-to-user social experience that differentiates it from traditional content broadcasters. This work examines the social network aspect of YouTube by measuring the full-scale YouTube subscription graph, comment graph, and video content corpus. We find YouTube to deviate significantly from network characteristics that mark traditional online social networks, such as homophily, reciprocative linking, and assortativity. However, comparing to reported characteristics of another content-driven online social network, Twitter, YouTube is remarkably similar. Examining the social and content facets of user popularity, we find a stronger correlation between a user's social popularity and his/her most popular content as opposed to typical content popularity. Finally, we demonstrate an application of our measurements for classifying YouTube Partners, who are selected users that share YouTube's advertisement revenue. Results are motivating despite the highly imbalanced nature of the classification problem.