Public and nonprofit organizations often hesitate to adopt AI tools because most models are opaque even though standard approaches typically analyze aggregate patterns rather than offering actionable, case-level guidance. This study tests a practitioner-in-the-loop workflow that pairs transparent decision-tree models with large language models (LLMs) to improve predictive accuracy, interpretability, and the generation of practical insights. Using data from an ongoing college-success program, we build interpretable decision trees to surface key predictors. We then provide each tree's structure to an LLM, enabling it to reproduce case-level predictions grounded in the transparent models. Practitioners participate throughout feature engineering, model design, explanation review, and usability assessment, ensuring that field expertise informs the analysis at every stage. Results show that integrating transparent models, LLMs, and practitioner input yields accurate, trustworthy, and actionable case-level evaluations, offering a viable pathway for responsible AI adoption in the public and nonprofit sectors.

Membership inference attacks (MIAs) have emerged as the standard tool for evaluating the privacy risks of AI models. However, state-of-the-art attacks require training numerous, often computationally expensive, reference models, limiting their practicality. We present a novel approach for estimating model-level vulnerability, the TPR at low FPR, to membership inference attacks without requiring reference models. Empirical analysis shows loss distributions to be asymmetric and heavy-tailed and suggests that most points at risk from MIAs have moved from the tail (high-loss region) to the head (low-loss region) of the distribution after training. We leverage this insight to propose a method to estimate model-level vulnerability from the training and testing distribution alone: using the absence of outliers from the high-loss region as a predictor of the risk. We evaluate our method, the TNR of a simple loss attack, across a wide range of architectures and datasets and show it to accurately estimate model-level vulnerability to the SOTA MIA attack (LiRA). We also show our method to outperform both low-cost (few reference models) attacks such as RMIA and other measures of distribution difference. We finally evaluate the use of non-linear functions to evaluate risk and show the approach to be promising to evaluate the risk in large-language models.

Deep learning-based computational methods have achieved promising results in predicting protein-protein interactions (PPIs). However, existing benchmarks predominantly focus on isolated pairwise evaluations, overlooking a model's capability to reconstruct biologically meaningful PPI networks, which is crucial for biology research. To address this gap, we introduce PRING, the first comprehensive benchmark that evaluates protein-protein interaction prediction from a graph-level perspective. PRING curates a high-quality, multi-species PPI network dataset comprising 21,484 proteins and 186,818 interactions, with well-designed strategies to address both data redundancy and leakage. Building on this golden-standard dataset, we establish two complementary evaluation paradigms: (1) topology-oriented tasks, which assess intra and cross-species PPI network construction, and (2) function-oriented tasks, including protein complex pathway prediction, GO module analysis, and essential protein justification. These evaluations not only reflect the model's capability to understand the network topology but also facilitate protein function annotation, biological module detection, and even disease mechanism analysis. Extensive experiments on four representative model categories, consisting of sequence similarity-based, naive sequence-based, protein language model-based, and structure-based approaches, demonstrate that current PPI models have potential limitations in recovering both structural and functional properties of PPI networks, highlighting the gap in supporting real-world biological applications. We believe PRING provides a reliable platform to guide the development of more effective PPI prediction models for the community. The dataset and source code of PRING are available at https://github.com/SophieSarceau/PRING.

Ensuring fairness in machine learning models is a critical challenge. Existing debiasing methods often compromise performance, rely on static correction strategies, and struggle with data sparsity, particularly within minority groups. Furthermore, their utilization of sensitive attributes is often suboptimal, either depending excessively on complete attribute labeling or disregarding these attributes entirely. To overcome these limitations, we propose FairNet, a novel framework for dynamic, instance-level fairness correction. FairNet integrates a bias detector with conditional low-rank adaptation (LoRA), which enables selective activation of the fairness correction mechanism exclusively for instances identified as biased, and thereby preserve performance on unbiased instances. A key contribution is a new contrastive loss function for training the LoRA module, specifically designed to minimize intra-class representation disparities across different sensitive groups and effectively address underfitting in minority groups. The FairNet framework can flexibly handle scenarios with complete, partial, or entirely absent sensitive attribute labels. Theoretical analysis confirms that, under moderate TPR/FPR for the bias detector, FairNet can enhance the performance of the worst group without diminishing overall model performance, and potentially yield slight performance improvements. Comprehensive empirical evaluations across diverse vision and language benchmarks validate the effectiveness of FairNet.

Pre-training Graph Foundation Models (GFMs) on text-attributed graphs (TAGs) is central to web-scale applications such as search, recommendation, and knowledge discovery. However, existing CLIP-style graph-text aligners face two key limitations: they assume strict one-to-one correspondences between nodes and texts, overlooking the inherent many-to-many relations in real-world graphs; and they rely on static alignment objectives that cannot adapt to varying data quality, making them brittle under noisy supervision. Together, these limitations expose a core dilemma: embracing expressive many-to-many alignment amplifies noise, while reverting to strict one-to-one strategies sacrifices semantic diversity and fails to handle inherently mismatched pairs. To address these challenges, we propose ADAligner, a dynamic, quality-aware graph-text alignment framework that dynamically adjusts between expressive many-to-many and conservative one-to-one objectives according to supervision quality. ADAligner estimates batch-level alignment reliability in real time and adapts its optimization accordingly, promoting soft, subgraph-level many-to-many alignment when supervision is clean, while emphasizing reliable one-to-one alignment by dynamically filtering low-confidence pairs under noise. Theoretically, we prove that this dynamic mechanism forms a stable negative feedback process, ensuring convergence and robustness. Comprehensive experiments on nine diverse TAG datasets demonstrate that ADAligner consistently outperforms prior graph-text aligners on zero-/few-shot node classification, link prediction and cross-modal retrieval tasks. It maintains strong robustness under noisy supervision and accelerates pre-training by approximately 2 to 3 times compared to multimodal baselines, establishing a scalable and reliable foundation for graph-text representation learning in real-world web environments.

Removing Personally Identifiable Information (PII) from clinical notes in Electronic Health Records (EHRs) is essential for research and AI development. While Large Language Models (LLMs) are powerful, their high computational costs and the data privacy risks of API-based services limit their use, especially in low-resource settings. To address this, we developed LOGICAL (Local Obfuscation by GLINER for Impartial Context-Aware Lineage), an efficient, locally deployable PII removal system built on a fine-tuned Generalist and Lightweight Named Entity Recognition (GLiNER) model. We used 1515 clinical documents from a psychiatric hospital's EHR system. We defined nine PII categories for removal. A modern-gliner-bi-large-v1.0 model was fine-tuned on 2849 text instances and evaluated on a test set of 376 instances using character-level precision, recall, and F1-score. We compared its performance against Microsoft Azure NER, Microsoft Presidio, and zero-shot prompting with Gemini-Pro-2.5 and Llama-3.3-70B-Instruct. The fine-tuned GLiNER model achieved superior performance, with an overall micro-average F1-score of 0.980, significantly outperforming Gemini-Pro-2.5 (F1-score: 0.845). LOGICAL correctly sanitised 95% of documents completely, compared to 64% for the next-best solution. The model operated efficiently on a standard laptop without a dedicated GPU. However, a 2% entity-level false negative rate underscores the need for human-in-the-loop validation across all tested systems. Fine-tuned, specialised transformer models like GLiNER offer an accurate, computationally efficient, and secure solution for PII removal from clinical notes. This "sanitisation at the source" approach is a practical alternative to resource-intensive LLMs, enabling the creation of de-identified datasets for research and AI development while preserving data privacy, particularly in resource-constrained environments.

Monitoring species distribution is vital for conservation efforts, enabling the assessment of environmental impacts and the development of effective preservation strategies. Traditional data collection methods, including citizen science, offer valuable insights but remain limited in coverage and completeness. Species Distribution Modelling (SDM) helps address these gaps by using occurrence data and environmental variables to predict species presence across large regions. In this study, we enhance SDM accuracy for frogs (Anura) by applying deep learning and data imputation techniques using data from the "EY - 2022 Biodiversity Challenge." Our experiments show that data balancing significantly improved model performance, reducing the Mean Absolute Error (MAE) from 189 to 29 in frog counting tasks. Feature selection identified key environmental factors influencing occurrence, optimizing inputs while maintaining predictive accuracy. The multimodal ensemble model, integrating land cover, NDVI, and other environmental inputs, outperformed individual models and showed robust generalization across unseen regions. The fusion of image and tabular data improved both frog counting and habitat classification, achieving 84.9% accuracy with an AUC of 0.90. This study highlights the potential of multimodal learning and data preprocessing techniques such as balancing and imputation to improve predictive ecological modeling when data are sparse or incomplete, contributing to more precise and scalable biodiversity monitoring.

Abstract--Alzheimer's disease is a severe brain disorder that causes harm in various brain areas and leads to memory damage. The limited availability of labeled medical data poses a significant challenge for accurate Alzheimer's disease detection. There is a critical need for effective methods to improve the accuracy of Alzheimer's disease detection, considering the scarcity of labeled data, the complexity of the disease, and the constraints related to data privacy. T o address this challenge, our study leverages the power of big data in the form of pre-trained Convolutional Neural Networks (CNNs) within the framework of Few-Shot Learning (FSL) and ensemble learning. We propose an ensemble approach based on a Prototypical Network (ProtoNet), a powerful method in FSL, integrating various pre-trained CNNs as encoders. This integration enhances the richness of features extracted from medical images. Our approach also includes a combination of class-aware loss and entropy loss to ensure a more precise classification of Alzheimer's disease progression levels. The effectiveness of our method was evaluated using two datasets, the Kaggle Alzheimer dataset, and the ADNI dataset, achieving an accuracy of 99.72% and 99.86%, respectively. The comparison of our results with relevant state-of-the-art studies demonstrated that our approach achieved superior accuracy and highlighted its validity and potential for real-world applications in early Alzheimer's disease detection. Index T erms--Few-shot learning, prototypical network, ensemble learning, transfer learning, pre-trained models, healthcare, Alzheimer disease. LZHEIMER'S disease is a progressive neurodegenera-tive disorder that mainly affects the elderly and causes memory loss and severe cognitive decline. The advances in medical imaging technologies, such as Magnetic Resonance Imaging (MRI) and Positron Emission Tomography (PET), have opened new avenues for the analysis and understanding of this severe disease [1], [2]. Employing data analytics on these images helps to provide detailed insights about the structural and functional changes in the brain caused by this disease, which facilitates the early diagnosis and monitoring of disease progression [3]. However, the application of traditional Machine Learning (ML) techniques in analyzing medical images for Alzheimer's disease diagnosis faces significant challenges [4]. One of the primary limitations is the scarcity of labeled data.

Predicting which hypothetical inorganic crystals can be experimentally realized remains a central challenge in accelerating materials discovery. SyntheFormer is a positive-unlabeled framework that learns synthesizability directly from crystal structure, combining a Fourier-transformed crystal periodicity (FTCP) representation with hierarchical feature extraction, Random-Forest feature selection, and a compact deep MLP classifier. The model is trained on historical data from 2011 through 2018 and evaluated prospectively on future years from 2019 to 2025, where the positive class constitutes only 1.02 per cent of samples. Under this temporally separated evaluation, SyntheFormer achieves a test area under the ROC curve of 0.735 and, with dual-threshold calibration, attains high-recall screening with 97.6 per cent recall at 94.2 per cent coverage, which minimizes missed opportunities while preserving discriminative power. Crucially, the model recovers experimentally confirmed metastable compounds that lie far from the convex hull and simultaneously assigns low scores to many thermodynamically stable yet unsynthesized candidates, demonstrating that stability alone is insufficient to predict experimental attainability. By aligning structure-aware representation with uncertainty-aware decision rules, SyntheFormer provides a practical route to prioritize synthesis targets and focus laboratory effort on the most promising new inorganic materials.

Breast cancer is a leading cause of death among women worldwide, emphasizing the need for early detection and accurate diagnosis. As such Ultrasound Imaging, a reliable and cost-effective tool, is used for this purpose, however the sensitive nature of medical data makes it challenging to develop accurate and private artificial intelligence models. A solution is Federated Learning as it is a promising technique for distributed machine learning on sensitive medical data while preserving patient privacy. However, training on non-Independent and non-Identically Distributed (non-IID) local datasets can impact the accuracy and generalization of the trained model, which is crucial for accurate tumour boundary delineation in BC segmentation. This study aims to tackle this challenge by applying the Federated Proximal (FedProx) method to non-IID Ultrasonic Breast Cancer Imaging datasets. Moreover, we focus on enhancing tumour segmentation accuracy by incorporating a modified U-Net model with attention mechanisms. Our approach resulted in a global model with 96% accuracy, demonstrating the effectiveness of our method in enhancing tumour segmentation accuracy while preserving patient privacy. Our findings suggest that FedProx has the potential to be a promising approach for training precise machine learning models on non-IID local medical datasets.