Cultural algorithm is a kind of evolutionary algorithm inspired from societal evolution and is composed of a belief space, a population space and a protocol that enables exchange of knowledge between these sources. Knowledge created in the population space is accepted into the belief space while this collective knowledge from these sources is combined to influence the decisions of the individual agents in solving problems. Classification rules comes under descriptive knowledge discovery in data mining and are the most sought out by users since they represent highly comprehensible form of knowledge. The rules have certain properties which make them useful forms of actionable knowledge to users. The rules are evaluated using these properties namely the rule metrics. In the current study a Cultural Algorithm Toolkit for Classification Rule Mining (CAT-CRM) is proposed which allows the user to control three different set of parameters namely the evolutionary parameters, the rule parameters as well as agent parameters and hence can be used for experimenting with an evolutionary system, a rule mining system or an agent based social system. Results of experiments conducted to observe the effect of different number and type of metrics on the performance of the algorithm on bench mark data sets is reported.

We construct an extension of diffusion geometry to multiple modalities through joint approximate diagonalization of Laplacian matrices. This naturally extends classical data analysis tools based on spectral geometry, such as diffusion maps and spectral clustering. We provide several synthetic and real examples of manifold learning, retrieval, and clustering demonstrating that the joint diffusion geometry frequently better captures the inherent structure of multi-modal data. We also show that many previous attempts to construct multimodal spectral clustering can be seen as particular cases of joint approximate diagonalization of the Laplacians.

Data mining involves the systematic analysis of large data sets, and data mining in agricultural soil datasets is exciting and modern research area. The productive capacity of a soil depends on soil fertility. Achieving and maintaining appropriate levels of soil fertility, is of utmost importance if agricultural land is to remain capable of nourishing crop production. In this research, Steps for building a predictive model of soil fertility have been explained. This paper aims at predicting soil fertility class using decision tree algorithms in data mining . Further, it focuses on performance tuning of J48 decision tree algorithm with the help of meta-techniques such as attribute selection and boosting.

In this work we are interested in the problems of supervised learning and variable selection when the input-output dependence is described by a nonlinear function depending on a few variables. Our goal is to consider a sparse nonparametric model, hence avoiding linear or additive models. The key idea is to measure the importance of each variable in the model by making use of partial derivatives. Based on this intuition we propose a new notion of nonparametric sparsity and a corresponding least squares regularization scheme. Using concepts and results from the theory of reproducing kernel Hilbert spaces and proximal methods, we show that the proposed learning algorithm corresponds to a minimization problem which can be provably solved by an iterative procedure. The consistency properties of the obtained estimator are studied both in terms of prediction and selection performance. An extensive empirical analysis shows that the proposed method performs favorably with respect to the state-of-the-art methods.

Wireless sensor networks are composed of distributed sensors that can be used for signal detection or classification. The likelihood functions of the hypotheses are often not known in advance, and decision rules have to be learned via supervised learning. A specific such algorithm is Fisher discriminant analysis (FDA), the classification accuracy of which has been previously studied in the context of wireless sensor networks. Previous work, however, does not take into account the communication protocol or battery lifetime of the sensor networks; in this paper we extend the existing studies by proposing a model that captures the relationship between battery lifetime and classification accuracy. In order to do so we combine the FDA with a model that captures the dynamics of the Carrier-Sense Multiple-Access (CSMA) algorithm, the random-access algorithm used to regulate communications in sensor networks. This allows us to study the interaction between the classification accuracy, battery lifetime and effort put towards learning, as well as the impact of the back-off rates of CSMA on the accuracy. We characterize the tradeoff between the length of the training stage and accuracy, and show that accuracy is non-monotone in the back-off rate due to changes in the training sample size and overfitting.

We propose a specialized string kernel for small bio-molecules, peptides and pseudo-sequences of binding interfaces. The kernel incorporates physico-chemical properties of amino acids and elegantly generalize eight kernels, such as the Oligo, the Weighted Degree, the Blended Spectrum, and the Radial Basis Function. We provide a low complexity dynamic programming algorithm for the exact computation of the kernel and a linear time algorithm for it's approximation. Combined with kernel ridge regression and SupCK, a novel binding pocket kernel, the proposed kernel yields biologically relevant and good prediction accuracy on the PepX database. For the first time, a machine learning predictor is capable of accurately predicting the binding affinity of any peptide to any protein. The method was also applied to both single-target and pan-specific Major Histocompatibility Complex class II benchmark datasets and three Quantitative Structure Affinity Model benchmark datasets. On all benchmarks, our method significantly (p-value < 0.057) outperforms the current state-of-the-art methods at predicting peptide-protein binding affinities. The proposed approach is flexible and can be applied to predict any quantitative biological activity. The method should be of value to a large segment of the research community with the potential to accelerate peptide-based drug and vaccine development.

In this paper, we propose a semiparametric approach, named nonparanormal skeptic, for efficiently and robustly estimating high dimensional undirected graphical models. To achieve modeling flexibility, we consider Gaussian Copula graphical models (or the nonparanormal) as proposed by Liu et al. (2009). To achieve estimation robustness, we exploit nonparametric rank-based correlation coefficient estimators, including Spearman's rho and Kendall's tau. In high dimensional settings, we prove that the nonparanormal skeptic achieves the optimal parametric rate of convergence in both graph and parameter estimation. This celebrating result suggests that the Gaussian copula graphical models can be used as a safe replacement of the popular Gaussian graphical models, even when the data are truly Gaussian. Besides theoretical analysis, we also conduct thorough numerical simulations to compare different estimators for their graph recovery performance under both ideal and noisy settings. The proposed methods are then applied on a large-scale genomic dataset to illustrate their empirical usefulness. The R language software package huge implementing the proposed methods is available on the Comprehensive R Archive Network: http://cran. r-project.org/.

This paper reports on our analysis of the 2011 CAMRa Challenge dataset (Track 2) for context-aware movie recommendation systems. The train dataset comprises 4,536,891 ratings provided by 171,670 users on 23,974$ movies, as well as the household groupings of a subset of the users. The test dataset comprises 5,450 ratings for which the user label is missing, but the household label is provided. The challenge required to identify the user labels for the ratings in the test set. Our main finding is that temporal information (time labels of the ratings) is significantly more useful for achieving this objective than the user preferences (the actual ratings). Using a model that leverages on this fact, we are able to identify users within a known household with an accuracy of approximately 96% (i.e. misclassification rate around 4%).

Electronic health records (EHRs) are an emerging relational domain with large potential to improve clinical outcomes. We apply two statistical relational learning (SRL) algorithms to the task of predicting primary myocardial infarction. We show that one SRL algorithm, relational functional gradient boosting, outperforms propositional learners particularly in the medically-relevant high recall region. We observe that both SRL algorithms predict outcomes better than their propositional analogs and suggest how our methods can augment current epidemiological practices.

We investigate machine learning methods for diagnostic screening of heart disease. Coronary heart disease is the leading cause of death in the US, causing more deaths than all types of cancers combined. Early diagnosis of heart disease in women is harder than it is in men and typically requires the administration of several clinical tests on the patient. Most risk stratification methods aggregate the results of such tests, including the risky, invasive procedures that cannot be administered on all patients. In this paper, our goal is to identify patients who are under high-risk of having heart disease and related adverse events, using a minimal number of diagnostic tests, especially less invasive ones. The low frequency of patients with severe heart disease in the dataset is challenging for most conventional machine learning methods. To overcome this problem, we develop and apply a cost-sensitive k nearest neighbor algorithm. Our contributions are two fold: First, we compare the predictive value of several diagnostic procedures for heart disease, including electrocardiography, angiography, radionuclide perfusion and conclude that in womens heart disease, certain combinations of non-invasive techniques are more predictive than some of the widely used invasive procedures. Then, we evaluate held out data and achieve an AUROC over 0.70, signifying valuable clinical utility, using only the least costly and least invasive tests.