Automatic extraction of temporal relations between event pairs is an important task for several natural language processing applications such as Question Answering, Information Extraction, and Summarization. Since most existing methods are supervised and require large corpora, which for many languages do not exist, we have concentrated our efforts to reduce the need for annotated data as much as possible. This paper presents two different algorithms towards this goal. The first algorithm is a weakly supervised machine learning approach for classification of temporal relations between events. In the first stage, the algorithm learns a general classifier from an annotated corpus. Then, inspired by the hypothesis of "one type of temporal relation per discourse'', it extracts useful information from a cluster of topically related documents. We show that by combining the global information of such a cluster with local decisions of a general classifier, a bootstrapping cross-document classifier can be built to extract temporal relations between events. Our experiments show that without any additional annotated data, the accuracy of the proposed algorithm is higher than that of several previous successful systems. The second proposed method for temporal relation extraction is based on the expectation maximization (EM) algorithm. Within EM, we used different techniques such as a greedy best-first search and integer linear programming for temporal inconsistency removal. We think that the experimental results of our EM based algorithm, as a first step toward a fully unsupervised temporal relation extraction method, is encouraging.

Collective classification models attempt to improve classification performance by taking into account the class labels of related instances. However, they tend not to learn patterns of interactions between classes and/or make the assumption that instances of the same class link to each other (assortativity assumption). Blockmodels provide a solution to these issues, being capable of modelling assortative and disassortative interactions, and learning the pattern of interactions in the form of a summary network. The Supervised Blockmodel provides good classification performance using link structure alone, whilst simultaneously providing an interpretable summary of network interactions to allow a better understanding of the data. This work explores three variants of supervised blockmodels of varying complexity and tests them on four structurally different real world networks.

When response variables are nominal and populations are cross-classified with respect to multiple polytomies, questions often arise about the degree of association of the responses with explanatory variables. When populations are known, we introduce a nominal association vector and matrix to evaluate the dependence of a response variable with an explanatory variable. These measures provide detailed evaluations of nominal associations at both local and global levels. We also define a general class of global association measures which embraces the well known association measure by Goodman-Kruskal (1954). The proposed association matrix also gives rise to the expected generalized confusion matrix in classification. The hierarchy of equivalence relations defined by the association vector and matrix are also shown.

Cultural algorithm is a kind of evolutionary algorithm inspired from societal evolution and is composed of a belief space, a population space and a protocol that enables exchange of knowledge between these sources. Knowledge created in the population space is accepted into the belief space while this collective knowledge from these sources is combined to influence the decisions of the individual agents in solving problems. Classification rules comes under descriptive knowledge discovery in data mining and are the most sought out by users since they represent highly comprehensible form of knowledge. The rules have certain properties which make them useful forms of actionable knowledge to users. The rules are evaluated using these properties namely the rule metrics. In the current study a Cultural Algorithm Toolkit for Classification Rule Mining (CAT-CRM) is proposed which allows the user to control three different set of parameters namely the evolutionary parameters, the rule parameters as well as agent parameters and hence can be used for experimenting with an evolutionary system, a rule mining system or an agent based social system. Results of experiments conducted to observe the effect of different number and type of metrics on the performance of the algorithm on bench mark data sets is reported.

We construct an extension of diffusion geometry to multiple modalities through joint approximate diagonalization of Laplacian matrices. This naturally extends classical data analysis tools based on spectral geometry, such as diffusion maps and spectral clustering. We provide several synthetic and real examples of manifold learning, retrieval, and clustering demonstrating that the joint diffusion geometry frequently better captures the inherent structure of multi-modal data. We also show that many previous attempts to construct multimodal spectral clustering can be seen as particular cases of joint approximate diagonalization of the Laplacians.

Data mining involves the systematic analysis of large data sets, and data mining in agricultural soil datasets is exciting and modern research area. The productive capacity of a soil depends on soil fertility. Achieving and maintaining appropriate levels of soil fertility, is of utmost importance if agricultural land is to remain capable of nourishing crop production. In this research, Steps for building a predictive model of soil fertility have been explained. This paper aims at predicting soil fertility class using decision tree algorithms in data mining . Further, it focuses on performance tuning of J48 decision tree algorithm with the help of meta-techniques such as attribute selection and boosting.

In this work we are interested in the problems of supervised learning and variable selection when the input-output dependence is described by a nonlinear function depending on a few variables. Our goal is to consider a sparse nonparametric model, hence avoiding linear or additive models. The key idea is to measure the importance of each variable in the model by making use of partial derivatives. Based on this intuition we propose a new notion of nonparametric sparsity and a corresponding least squares regularization scheme. Using concepts and results from the theory of reproducing kernel Hilbert spaces and proximal methods, we show that the proposed learning algorithm corresponds to a minimization problem which can be provably solved by an iterative procedure. The consistency properties of the obtained estimator are studied both in terms of prediction and selection performance. An extensive empirical analysis shows that the proposed method performs favorably with respect to the state-of-the-art methods.

Wireless sensor networks are composed of distributed sensors that can be used for signal detection or classification. The likelihood functions of the hypotheses are often not known in advance, and decision rules have to be learned via supervised learning. A specific such algorithm is Fisher discriminant analysis (FDA), the classification accuracy of which has been previously studied in the context of wireless sensor networks. Previous work, however, does not take into account the communication protocol or battery lifetime of the sensor networks; in this paper we extend the existing studies by proposing a model that captures the relationship between battery lifetime and classification accuracy. In order to do so we combine the FDA with a model that captures the dynamics of the Carrier-Sense Multiple-Access (CSMA) algorithm, the random-access algorithm used to regulate communications in sensor networks. This allows us to study the interaction between the classification accuracy, battery lifetime and effort put towards learning, as well as the impact of the back-off rates of CSMA on the accuracy. We characterize the tradeoff between the length of the training stage and accuracy, and show that accuracy is non-monotone in the back-off rate due to changes in the training sample size and overfitting.

We propose a specialized string kernel for small bio-molecules, peptides and pseudo-sequences of binding interfaces. The kernel incorporates physico-chemical properties of amino acids and elegantly generalize eight kernels, such as the Oligo, the Weighted Degree, the Blended Spectrum, and the Radial Basis Function. We provide a low complexity dynamic programming algorithm for the exact computation of the kernel and a linear time algorithm for it's approximation. Combined with kernel ridge regression and SupCK, a novel binding pocket kernel, the proposed kernel yields biologically relevant and good prediction accuracy on the PepX database. For the first time, a machine learning predictor is capable of accurately predicting the binding affinity of any peptide to any protein. The method was also applied to both single-target and pan-specific Major Histocompatibility Complex class II benchmark datasets and three Quantitative Structure Affinity Model benchmark datasets. On all benchmarks, our method significantly (p-value < 0.057) outperforms the current state-of-the-art methods at predicting peptide-protein binding affinities. The proposed approach is flexible and can be applied to predict any quantitative biological activity. The method should be of value to a large segment of the research community with the potential to accelerate peptide-based drug and vaccine development.

In this paper, we propose a semiparametric approach, named nonparanormal skeptic, for efficiently and robustly estimating high dimensional undirected graphical models. To achieve modeling flexibility, we consider Gaussian Copula graphical models (or the nonparanormal) as proposed by Liu et al. (2009). To achieve estimation robustness, we exploit nonparametric rank-based correlation coefficient estimators, including Spearman's rho and Kendall's tau. In high dimensional settings, we prove that the nonparanormal skeptic achieves the optimal parametric rate of convergence in both graph and parameter estimation. This celebrating result suggests that the Gaussian copula graphical models can be used as a safe replacement of the popular Gaussian graphical models, even when the data are truly Gaussian. Besides theoretical analysis, we also conduct thorough numerical simulations to compare different estimators for their graph recovery performance under both ideal and noisy settings. The proposed methods are then applied on a large-scale genomic dataset to illustrate their empirical usefulness. The R language software package huge implementing the proposed methods is available on the Comprehensive R Archive Network: http://cran. r-project.org/.