Performance Analysis
Training Effective Node Classifiers for Cascade Classification
Shen, Chunhua, Wang, Peng, Paisitkriangkrai, Sakrapee, Hengel, Anton van den
Cascade classifiers are widely used in real-time object detection. Different from conventional classifiers that are designed for a low overall classification error rate, a classifier in each node of the cascade is required to achieve an extremely high detection rate and moderate false positive rate. Although there are a few reported methods addressing this requirement in the context of object detection, there is no principled feature selection method that explicitly takes into account this asymmetric node learning objective. We provide such an algorithm here. We show that a special case of the biased minimax probability machine has the same formulation as the linear asymmetric classifier (LAC) of Wu et al (2005). We then design a new boosting algorithm that directly optimizes the cost function of LAC. The resulting totally-corrective boosting algorithm is implemented by the column generation technique in convex optimization. Experimental results on object detection verify the effectiveness of the proposed boosting algorithm as a node classifier in cascade object detection, and show performance better than that of the current state-of-the-art.
Supervised, semi-supervised and unsupervised inference of gene regulatory networks
Maetschke, Stefan R., Madhamshettiwar, Piyush B., Davis, Melissa J., Ragan, Mark A.
Inference of gene regulatory network from expression data is a challenging task. Many methods have been developed to this purpose but a comprehensive evaluation that covers unsupervised, semi-supervised and supervised methods, and provides guidelines for their practical application, is lacking. We performed an extensive evaluation of inference methods on simulated expression data. The results reveal very low prediction accuracies for unsupervised techniques with the notable exception of the z-score method on knock-out data. In all other cases the supervised approach achieved the highest accuracies and even in a semi-supervised setting with small numbers of only positive samples, outperformed the unsupervised techniques.
Semiparametric Principal Component Analysis
We propose two new principal component analysis methods in this paper utilizing a semiparametric model. The according methods are named Copula Component Analysis (COCA) and Copula PCA. The semiparametric model assumes that, after unspecified marginally monotone transformations, the distributions are multivariate Gaussian.
Transelliptical Graphical Models
Liu, Han, Han, Fang, Zhang, Cun-hui
We advocate the use of a new distribution family--the transelliptical--for robust inference of high dimensional graphical models. The transelliptical family is an extension of the nonparanormal family proposed by Liu et al. (2009). Just as the nonparanormal extends the normal by transforming the variables using univariate functions, the transelliptical extends the elliptical family in the same way. We propose a nonparametric rank-based regularization estimator which achieves the parametric rates of convergence for both graph recovery and parameter estimation. Such a result suggests that the extra robustness and flexibility obtained by the semiparametric transelliptical modeling incurs almost no efficiency loss. We also discuss the relationship between this work with the transelliptical component analysis proposed by Han and Liu (2012).
Transelliptical Component Analysis
We propose a high dimensional semiparametric scale-invariant principle component analysis, named TCA, by utilize the natural connection between the elliptical distribution family and the principal component analysis. Elliptical distribution family includes many well-known multivariate distributions like multivariate Gaussian, t and logistic and it is extended to the meta-elliptical by Fang et.al (2002) using the copula techniques. In this paper we extend the meta-elliptical distribution family to a even larger family, called transelliptical. We prove that TCA can obtain a near-optimal s log d/n estimation consistency rate in recovering the leading eigenvector of the latent generalized correlation matrix under the transelliptical distribution family, even if the distributions are very heavy-tailed, have infinite second moments, do not have densities and possess arbitrarily continuous marginal distributions. A feature selection result with explicit rate is also provided. TCA is further implemented in both numerical simulations and largescale stock data to illustrate its empirical usefulness. Both theories and experiments confirm that TCA can achieve model flexibility, estimation accuracy and robustness at almost no cost.
Smooth-projected Neighborhood Pursuit for High-dimensional Nonparanormal Graph Estimation
Zhao, Tuo, Roeder, Kathryn, Liu, Han
We introduce a new learning algorithm, named smooth-projected neighborhood pursuit, for estimating high dimensional undirected graphs. In particularly, we focus on the nonparanormal graphical model and provide theoretical guarantees for graph estimation consistency. In addition to new computational and theoretical analysis, we also provide an alternative view to analyze the tradeoff between computational efficiency and statistical error under a smoothing optimization framework. Numerical results on both synthetic and real datasets are provided to support our theory.
Transelliptical Graphical Models
Liu, Han, Han, Fang, Zhang, Cun-hui
We advocate the use of a new distribution family--the transelliptical--for robust inference of high dimensional graphical models. The transelliptical family is an extension of the nonparanormal family proposed by Liu et al. (2009). Just as the nonparanormal extends the normal by transforming the variables using univariate functions, the transelliptical extends the elliptical family in the same way. We propose a nonparametric rank-based regularization estimator which achieves the parametric rates of convergence for both graph recovery and parameter estimation. Such a result suggests that the extra robustness and flexibility obtained by the semiparametric transelliptical modeling incurs almost no efficiency loss. We also discuss the relationship between this work with the transelliptical component analysis proposed by Han and Liu (2012).
Semiparametric Principal Component Analysis
We propose two new principal component analysis methods in this paper utilizing a semiparametric model. The according methods are named Copula Component Analysis (COCA) and Copula PCA. The semiparametric model assumes that, after unspecified marginally monotone transformations, the distributions are multivariate Gaussian.
Transelliptical Component Analysis
We propose a high dimensional semiparametric scale-invariant principle component analysis, named TCA, by utilize the natural connection between the elliptical distribution family and the principal component analysis. Elliptical distribution family includes many well-known multivariate distributions like multivariate Gaussian, t and logistic and it is extended to the meta-elliptical by Fang et.al (2002) using the copula techniques. In this paper we extend the meta-elliptical distribution family to a even larger family, called transelliptical. We prove that TCA can obtain a near-optimal s log d/n estimation consistency rate in recovering the leading eigenvector of the latent generalized correlation matrix under the transelliptical distribution family, even if the distributions are very heavy-tailed, have infinite second moments, do not have densities and possess arbitrarily continuous marginal distributions. A feature selection result with explicit rate is also provided. TCA is further implemented in both numerical simulations and largescale stock data to illustrate its empirical usefulness. Both theories and experiments confirm that TCA can achieve model flexibility, estimation accuracy and robustness at almost no cost.
Smooth-projected Neighborhood Pursuit for High-dimensional Nonparanormal Graph Estimation
Zhao, Tuo, Roeder, Kathryn, Liu, Han
We introduce a new learning algorithm, named smooth-projected neighborhood pursuit, for estimating high dimensional undirected graphs. In particularly, we focus on the nonparanormal graphical model and provide theoretical guarantees for graph estimation consistency. In addition to new computational and theoretical analysis, we also provide an alternative view to analyze the tradeoff between computational efficiency and statistical error under a smoothing optimization framework. Numerical results on both synthetic and real datasets are provided to support our theory.