Species distribution models relate the geographic occurrence pattern of a species to environmental features and are used for a variety of scientific and management purposes. One source of data for building species distribution models is citizen science, in which volunteers report locations where they observed (or did not observe) sets of species. Since volunteers have variable levels of expertise, citizen science data may contain both false positives and false negatives in the location labels (present vs. absent) they provide, but many common modeling approaches for this task do not address these sources of noise explicitly. In this paper, we propose to formulate the species distribution modeling task as a classification problem with class-conditional noise. Our approach builds on other applications of class-conditional noise models to crowdsourced data, but we focus on leveraging features of the noise processes that are distinct from the class features. We describe the conditions under which the parameters of our proposed model are identifiable and apply it to simulated data and data from the eBird citizen science project.

Partial label learning aims to induce a multi-class classifier from training examples where each of them is associated with a set of candidate labels, among which only one label is valid. The common discriminative solution to learn from partial label examples assumes one parametric model for each class label, whose predictions are aggregated to optimize specific objectives such as likelihood or margin over the training examples. Nonetheless, existing discriminative approaches treat the predictions from all parametric models in an equal manner, where the confidence of each candidate label being the ground-truth label is not differentiated. In this paper, a boosting-style partial label learning approach is proposed to enabling confidence-rated discriminative modeling. Specifically, the ground-truth confidence of each candidate label is maintained in each boosting round and utilized to train the base classifier. Extensive experiments on artificial as well as real-world partial label data sets validate the effectiveness of the confidence-rated discriminative modeling.

We propose a framework to improve the performance of distantly-supervised relation extraction, by jointly learning to solve two related tasks: concept-instance extraction and relation extraction. We further extend this framework to make a novel use of document structure: in some small, well-structured corpora, sections can be identified that correspond to relation arguments, and distantly-labeled examples from such sections tend to have good precision. Using these as seeds we extract additional relation examples by applying label propagation on a graph composed of noisy examples extracted from a large unstructured testing corpus. Combined with the soft constraint that concept examples should have the same type as the second argument of the relation, we get significant improvements over several state-of-the-art approaches to distantly-supervised relation extraction, and reasonable extraction performance even with very small set of distant labels.

Adverse drug reaction (ADR) is a major burden for patients and healthcare industry. It usually causes preventable hospitalizations and deaths, while associated with a huge amount of cost. Traditional preclinical in vitro safety profiling and clinical safety trials are restricted in terms of small scale, long duration, huge financial costs and limited statistical signifi- cance. The availability of large amounts of drug and ADR data potentially allows ADR predictions during the drugs’ early preclinical stage with data analytics methods to inform more targeted clinical safety tests. Despite their initial success, existing methods have trade-offs among interpretability, predictive power and efficiency. This urges us to explore methods that could have all these strengths and provide practical solutions for real world ADR predictions. We cast the ADR-drug relation structure into a three-layer hierarchical Bayesian model. We interpret each ADR as a symbolic word and apply latent Dirichlet allocation (LDA) to learn topics that may represent certain biochemical mechanism that relates ADRs with drug structures. Based on LDA, we designed an equivalent regularization term to incorporate the hierarchical ADR domain knowledge. Finally, we developed a mixed input model leveraging a fast collapsed Gibbs sampling method that the complexity of each iteration of Gibbs sampling proportional only to the number of positive ADRs. Experiments on real world data show our models achieved higher prediction accuracy and shorter running time than the state-of-the-art alternatives.

Multimodality has been recently exploited to overcome the challenges of emotion recognition. In this paper, we present a study of fusion of electroencephalogram (EEG) features and musical features extracted from musical stimuli at decision level in recognizing the time-varying binary classes of arousal and valence. Our empirical results demonstrate that EEG modality was suffered from the non-stability of EEG signals, yet fusing with music modality could alleviate the issue and enhance the performance of emotion recognition.

The k-fold cross-validation is commonly used to evaluate the effectiveness of SVMs with the selected hyper-parameters. It is known that the SVM k-fold cross-validation is expensive, since it requires training k SVMs. However, little work has explored reusing the h-th SVM for training the (h+1)-th SVM for improving the efficiency of k-fold cross-validation. In this paper, we propose three algorithms that reuse the h-th SVM for improving the efficiency of training the (h+1)-th SVM. Our key idea is to efficiently identify the support vectors and to accurately estimate their associated weights (also called alpha values) of the next SVM by using the previous SVM. Our experimental results show that our algorithms are several times faster than the k-fold cross-validation which does not make use of the previously trained SVM. Moreover, our algorithms produce the same results (hence same accuracy) as the k-fold cross-validation which does not make use of the previously trained SVM.

Determining mortality risk is important for critical decisions in Intensive Care Units (ICU). The need for machine learning models that provide accurate patient-specific prediction of mortality is well recognized. We present a new algorithm for ICU mortality prediction that is designed to address the problem of imbalance, which occurs, in the context of binary classification, when one of the two classes is significantly under--represented in the data. We take a fundamentally new approach in exploiting the class imbalance through a feature transformation such that the transformed features are easier to classify. Hypothesis testing is used for classification with a test statistic that follows the distribution of the difference of two chi-squared random variables, for which there are no analytic expressions and we derive an accurate approximation. Experiments on a benchmark dataset of 4000 ICU patients show that our algorithm surpasses the best competing methods for mortality prediction.

Automated planning can be used to efficiently recognize goals and plans from partial or full observed action sequences. In this paper, we propose goal recognition heuristics that rely on information from planning landmarks - facts or actions that must occur if a plan is to achieve a goal when starting from some initial state. We develop two such heuristics: the first estimates goal completion by considering the ratio between achieved and extracted landmarks of a candidate goal, while the second takes into account how unique each landmark is among landmarks for all candidate goals. We empirically evaluate these heuristics over both standard goal/plan recognition problems, and a set of very large problems. We show that our heuristics can recognize goals more accurately, and run orders of magnitude faster, than the current state-of-the-art.

We propose a scalable approach to learn video-based question answering (QA): to answer a free-form natural language question about the contents of a video. Our approach automatically harvests a large number of videos and descriptions freely available online. Then, a large number of candidate QA pairs are automatically generated from descriptions rather than manually annotated. Next, we use these candidate QA pairs to train a number of video-based QA methods extended from MN (Sukhbaatar et al. 2015), VQA (Antol et al. 2015), SA (Yao et al. 2015), and SS (Venugopalan et al. 2015). In order to handle non-perfect candidate QA pairs, we propose a self-paced learning procedure to iteratively identify them and mitigate their effects in training. Finally, we evaluate performance on manually generated video-based QA pairs. The results show that our self-paced learning procedure is effective, and the extended SS model outperforms various baselines.

A common approach in positive-unlabeled learning is to train a classification model between labeled and unlabeled data. This strategy is in fact known to give an optimal classifier under mild conditions; however, it results in biased empirical estimates of the classifier performance. In this work, we show that the typically used performance measures such as the receiver operating characteristic curve, or the precision recall curve obtained on such data can be corrected with the knowledge of class priors; i.e., the proportions of the positive and negative examples in the unlabeled data. We extend the results to a noisy setting where some of the examples labeled positive are in fact negative and show that the correction also requires the knowledge of the proportion of noisy examples in the labeled positives. Using state-of-the-art algorithms to estimate the positive class prior and the proportion of noise, we experimentally evaluate two correction approaches and demonstrate their efficacy on real-life data.