Performance Analysis
Byzantine-Robust Distributed Learning: Towards Optimal Statistical Rates
Yin, Dong, Chen, Yudong, Ramchandran, Kannan, Bartlett, Peter
In large-scale distributed learning, security issues have become increasingly important. Particularly in a decentralized environment, some computing units may behave abnormally, or even exhibit Byzantine failures---arbitrary and potentially adversarial behavior. In this paper, we develop distributed learning algorithms that are provably robust against such failures, with a focus on achieving optimal statistical performance. A main result of this work is a sharp analysis of two robust distributed gradient descent algorithms based on median and trimmed mean operations, respectively. We prove statistical error rates for three kinds of population loss functions: strongly convex, non-strongly convex, and smooth non-convex. In particular, these algorithms are shown to achieve order-optimal statistical error rates for strongly convex losses. To achieve better communication efficiency, we further propose a median-based distributed algorithm that is provably robust, and uses only one communication round. For strongly convex quadratic loss, we show that this algorithm achieves the same optimal error rate as the robust distributed gradient descent algorithms.
Fast Best Subset Selection: Coordinate Descent and Local Combinatorial Optimization Algorithms
Hazimeh, Hussein, Mazumder, Rahul
We consider the canonical $L_0$-regularized least squares problem (aka best subsets) which is generally perceived as a `gold-standard' for many sparse learning regimes. In spite of worst-case computational intractability results, recent work has shown that advances in mixed integer optimization can be used to obtain near-optimal solutions to this problem for instances where the number of features $p \approx 10^3$. While these methods lead to estimators with excellent statistical properties, often there is a price to pay in terms of a steep increase in computation times, especially when compared to highly efficient popular algorithms for sparse learning (e.g., based on $L_1$-regularization) that scale to much larger problem sizes. Bridging this gap is a main goal of this paper. We study the computational aspects of a family of $L_0$-regularized least squares problems with additional convex penalties. We propose a hierarchy of necessary optimality conditions for these problems. We develop new algorithms, based on coordinate descent and local combinatorial optimization schemes, and study their convergence properties. We demonstrate that the choice of an algorithm determines the quality of solutions obtained; and local combinatorial optimization-based algorithms generally result in solutions of superior quality. We show empirically that our proposed framework is relatively fast for problem instances with $p\approx 10^6$ and works well, in terms of both optimization and statistical properties (e.g., prediction, estimation, and variable selection), compared to simpler heuristic algorithms. A version of our algorithm reaches up to a three-fold speedup (with $p$ up to $10^6$) when compared to state-of-the-art schemes for sparse learning such as glmnet and ncvreg.
Support Vector Machine Simplified using R
There is no thumb rule of choosing the best kernel. The only solution is Cross-validation. Try several different Kernels, and evaluate their performance metrics such as AUC and select the one with highest AUC. If you want to compare in terms of speed, linear kernels usually compute much faster than radial or polynomial kernels.
Clinically Meaningful Comparisons Over Time: An Approach to Measuring Patient Similarity based on Subsequence Alignment
Goyal, Dev, Syed, Zeeshan, Wiens, Jenna
Longitudinal patient data has the potential to improve clinical risk stratification models for disease. However, chronic diseases that progress slowly over time are often heterogeneous in their clinical presentation. Patients may progress through disease stages at varying rates. This leads to pathophysiological misalignment over time, making it difficult to consistently compare patients in a clinically meaningful way. Furthermore, patients present clinically for the first time at different stages of disease. This eliminates the possibility of simply aligning patients based on their initial presentation. Finally, patient data may be sampled at different rates due to differences in schedules or missed visits. To address these challenges, we propose a robust measure of patient similarity based on subsequence alignment. Compared to global alignment techniques that do not account for pathophysiological misalignment, focusing on the most relevant subsequences allows for an accurate measure of similarity between patients. We demonstrate the utility of our approach in settings where longitudinal data, while useful, are limited and lack a clear temporal alignment for comparison. Applied to the task of stratifying patients for risk of progression to probable Alzheimer's Disease, our approach outperforms models that use only snapshot data (AUROC of 0.839 vs. 0.812) and models that use global alignment techniques (AUROC of 0.822). Our results support the hypothesis that patients' trajectories are useful for quantifying inter-patient similarities and that using subsequence matching and can help account for heterogeneity and misalignment in longitudinal data.
A brain signature highly predictive of future progression to Alzheimer's dementia
Dansereau, Christian, Tam, Angela, Badhwar, AmanPreet, Urchs, Sebastian, Orban, Pierre, Rosa-Neto, Pedro, Bellec, Pierre
Early prognosis of Alzheimer's dementia is hard. Mild cognitive impairment (MCI) typically precedes Alzheimer's dementia, yet only a fraction of MCI individuals will progress to dementia, even when screened using biomarkers. We propose here to identify a subset of individuals who share a common brain signature highly predictive of oncoming dementia. This signature was composed of brain atrophy and functional dysconnectivity and discovered using a machine learning model in patients suffering from dementia. The model recognized the same brain signature in MCI individuals, 90% of which progressed to dementia within three years. This result is a marked improvement on the state-of-theart in prognostic precision, while the brain signature still identified 47% of all MCI progressors. We thus discovered a sizable MCI subpopulation which represents an excellent recruitment target for clinical trials at the prodromal stage of Alzheimer's disease. Data used in preparation of this article were obtained from the Alzheimer's Disease Neuroimaging Initiative (ADNI) database (adni.loni.usc.edu). As such, the investigators within the ADNI contributed to the design and implementation of ADNI and/or provided data but did not participate in analysis or writing of this report. Acknowledgement_List.pdf Preprint submitted to March 5, 2018 1. Introduction Alzheimer's disease (AD) is the most common age-related neurodegenerative disorder. The typical progression of late-onset, sporadic AD comprises a lengthy preclinical stage, a prodromal stage of mild cognitive impairment (MCI), and a final stage of dementia. Usually, by the time patients suffer from dementia, severe and irreversible neurodegeneration has already occurred.
Metrics to Evaluate your Machine Learning Algorithm
Evaluating your machine learning algorithm is an essential part of any project. Your model may give you satisfying results when evaluated using a metric say accuracy_score but may give poor results when evaluated against other metrics such as logarithmic_loss or any other such metric. Most of the times we use classification accuracy to measure the performance of our model, however it is not enough to truly judge our model. In this post, we will cover different types of evaluation metrics available. Classification Accuracy is what we usually mean, when we use the term accuracy.
Modeling reverse thinking for machine learning
Human inertial thinking schemes can be formed through learning, which are then applied to quickly solve similar problems later. However, when problems are significantly different, inertial thinking generally presents the solutions that are definitely imperfect. In such cases, people will apply creative thinking, such as reverse thinking, to solve problems. Similarly, machine learning methods also form inertial thinking schemes through learning the knowledge from a large amount of data. However, when the testing data are vastly difference, the formed inertial thinking schemes will inevitably generate errors. This kind of inertial thinking is called illusion inertial thinking. Because all machine learning methods do not consider illusion inertial thinking, in this paper we propose a new method that uses reverse thinking to correct illusion inertial thinking, which increases the generalization ability of machine learning methods. Experimental results on benchmark datasets are used to validate the proposed method.
Constrained Classification and Ranking via Quantiles
Mackey, Alan, Luo, Xiyang, Eban, Elad
In most machine learning applications, classification accuracy is not the primary metric of interest. Binary classifiers which face class imbalance are often evaluated by the $F_\beta$ score, area under the precision-recall curve, Precision at K, and more. The maximization of many of these metrics can be expressed as a constrained optimization problem, where the constraint is a function of the classifier's predictions. In this paper we propose a novel framework for learning with constraints that can be expressed as a predicted positive rate (or negative rate) on a subset of the training data. We explicitly model the threshold at which a classifier must operate to satisfy the constraint, yielding a surrogate loss function which avoids the complexity of constrained optimization. The method is model-agnostic and only marginally more expensive than minimization of the unconstrained loss. Experiments on a variety of benchmarks show competitive performance relative to existing baselines.
Does mitigating ML's impact disparity require treatment disparity?
Lipton, Zachary C., Chouldechova, Alexandra, McAuley, Julian
Following related work in law and policy, two notions of disparity have come to shape the study of fairness in algorithmic decision-making. Algorithms exhibit treatment disparity if they formally treat members of protected subgroups differently; algorithms exhibit impact disparity when outcomes differ across subgroups, even if the correlation arises unintentionally. Naturally, we can achieve impact parity through purposeful treatment disparity. In one thread of technical work, papers aim to reconcile the two forms of parity proposing disparate learning processes (DLPs). Here, the learning algorithm can see group membership during training but produce a classifier that is group-blind at test time. In this paper, we show theoretically that: (i) When other features correlate to group membership, DLPs will (indirectly) implement treatment disparity, undermining the policy desiderata they are designed to address; (ii) When group membership is partly revealed by other features, DLPs induce within-class discrimination; and (iii) In general, DLPs provide a suboptimal trade-off between accuracy and impact parity. Based on our technical analysis, we argue that transparent treatment disparity is preferable to occluded methods for achieving impact parity. Experimental results on several real-world datasets highlight the practical consequences of applying DLPs vs. per-group thresholds.
Detecting Statistical Interactions from Neural Network Weights
Tsang, Michael, Cheng, Dehua, Liu, Yan
Interpreting neural networks is a crucial and challenging task in machine learning. In this paper, we develop a novel framework for detecting statistical interactions captured by a feedforward multilayer neural network by directly interpreting its learned weights. Depending on the desired interactions, our method can achieve significantly better or similar interaction detection performance compared to the state-of-the-art without searching an exponential solution space of possible interactions. We obtain this accuracy and efficiency by observing that interactions between input features are created by the non-additive effect of nonlinear activation functions, and that interacting paths are encoded in weight matrices. We demonstrate the performance of our method and the importance of discovered interactions via experimental results on both synthetic datasets and real-world application datasets.