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On Cross-validation for Sparse Reduced Rank Regression

arXiv.org Machine Learning

In high-dimensional data analysis, regularization methods pursuing sparsity and/or low rank have received a lot of attention recently. To provide a proper amount of shrinkage, it is typical to use a grid search and a model comparison criterion to find the optimal regularization parameters. However, we show that fixing the parameters across all folds may result in an inconsistency issue, and it is more appropriate to cross-validate projection-selection patterns to obtain the best coefficient estimate. Our in-sample error studies in jointly sparse and rank-deficient models lead to a new class of information criteria with four scale-free forms to bypass the estimation of the noise level. By use of an identity, we propose a novel scale-free calibration to help cross-validation achieve the minimax optimal error rate non-asymptotically. Experiments support the efficacy of the proposed methods.


Throwing everything - including the kitchen sink - at a machine learning problem

#artificialintelligence

It seems the more I read, the more confused I get - models, algorithms, surrogates; my head is spinning. Assume the dataset is in perfect condition - pure as the driven snow, no correlated features, no null in sight, nothing; and it has "enough" observations. To simplify, let's say we are looking at binary classification. Let's also say that we want to try four different algorithms: for example - logistic regression, naive Bayes, gradient boosted tree and multilayer perceptron. And, finally, let's assume that (since all this is for educational purposes), we have no issues with time, efficiency, computing power, computing budget and whatnot; we don't care if this is an overkill or if we're going after a fly with an elephant gun: we want to throw everything, including the kitchen sink, at the problem so we can extract every last ounce of performance when it's time to make predictions on totally unseen data.


Machine Learning -- Multiclass Classification with Imbalanced Data-set

#artificialintelligence

Classification problems having multiple classes with imbalanced dataset present a different challenge than a binary classification problem. The skewed distribution makes many conventional machine learning algorithms less effective, especially in predicting minority class examples. In order to do so, let us first understand the problem at hand and then discuss the ways to overcome those. The data set we will be using for this example is the famous "20 News groups" data set. The 20 Newsgroups data set is a collection of approximately 20,000 newsgroup documents, partitioned (nearly) evenly across 20 different newsgroups.


Classification of Functioning, Disability, and Health: ICF-CY Self Care (SCADI Dataset) Using Predictive Analytics

arXiv.org Machine Learning

The International Classification of Functioning, Disability, and Health for Children and Youth (ICF-CY) is a scaffold for designating and systematizing data on functioning and disability. It offers a standard semantic and a theoretical foundation for the demarcation and extent of wellbeing and infirmity. The multidimensional layout of ICF-CY comprehends a plethora of information with about 1400 categories making it difficult to analyze. Our research proposes a predictive model that classify self-care problems on Self-Care Activities Dataset based on the ICF- CY. The data used in this study resides 206 attributes of 70 children with motor and physical disability. Our study implements, compare and analyze Random Forest, Support vector machine, Naive Bayes, Hoeffding tree, and Lazy locally weighted learning using two-tailed T-test at 95% confidence interval. Boruta algorithm involved in the study minimizes the data dimensionality to advocate the minimal-optimal set of predictors. Random forest gave the best classification accuracy of 84.75%; root mean squared error of 0.18 and receiver operating characteristic of 0.99. Predictive analytics can simplify the usage of ICF-CY by automating the classification process of disability, functioning, and health.


Reproducible evaluation of diffusion MRI features for automatic classification of patients with Alzheimers disease

arXiv.org Machine Learning

Diffusion MRI is the modality of choice to study alterations of white matter. In the past years, various works have used diffusion MRI for automatic classification of Alzheimers disease. However, the performances obtained with different approaches are difficult to compare because of variations in components such as input data, participant selection, image preprocessing, feature extraction, feature selection (FS) and cross-validation (CV) procedure. Moreover, these studies are also difficult to reproduce because these different components are not readily available. In a previous work (Samper-Gonzalez et al. 2018), we proposed an open-source framework for the reproducible evaluation of AD classification from T1-weighted (T1w) MRI and PET data. In the present paper, we extend this framework to diffusion MRI data. The framework comprises: tools to automatically convert ADNI data into the BIDS standard, pipelines for image preprocessing and feature extraction, baseline classifiers and a rigorous CV procedure. We demonstrate the use of the framework through assessing the influence of diffusion tensor imaging (DTI) metrics (fractional anisotropy - FA, mean diffusivity - MD), feature types, imaging modalities (diffusion MRI or T1w MRI), data imbalance and FS bias. First, voxel-wise features generally gave better performances than regional features. Secondly, FA and MD provided comparable results for voxel-wise features. Thirdly, T1w MRI performed better than diffusion MRI. Fourthly, we demonstrated that using non-nested validation of FS leads to unreliable and over-optimistic results. All the code is publicly available: general-purpose tools have been integrated into the Clinica software (www.clinica.run) and the paper-specific code is available at: https://gitlab.icm-institute.org/aramislab/AD-ML.


Predicting with Proxies

arXiv.org Machine Learning

Predictive analytics is increasingly used to guide decision-making in many applications. However, in practice, we often have limited data on the true predictive task of interest, but copious data on a closely-related proxy predictive task. Practitioners often train predictive models on proxies since it achieves more accurate predictions. For example, e-commerce platforms use abundant customer click data (proxy) to make product recommendations rather than the relatively sparse customer purchase data (true outcome of interest); alternatively, hospitals often rely on medical risk scores trained on a different patient population (proxy) rather than their own patient population (true cohort of interest) to assign interventions. However, not accounting for the bias in the proxy can lead to sub-optimal decisions. Using real datasets, we find that this bias can often be captured by a sparse function of the features. Thus, we propose a novel two-step estimator that uses techniques from high-dimensional statistics to efficiently combine a large amount of proxy data and a small amount of true data. We prove upper bounds on the error of our proposed estimator and lower bounds on several heuristics commonly used by data scientists; in particular, our proposed estimator can achieve the same accuracy with exponentially less true data (in the number of features $d$). Our proof relies on a new tail inequality on the convergence of LASSO for approximately sparse vectors. Finally, we demonstrate the effectiveness of our approach on e-commerce and healthcare datasets; in both cases, we achieve significantly better predictive accuracy as well as managerial insights into the nature of the bias in the proxy data.


On the Interaction Effects Between Prediction and Clustering

arXiv.org Machine Learning

Machine learning systems increasingly depend on pipelines of multiple algorithms to provide high quality and well structured predictions. This paper argues interaction effects between clustering and prediction (e.g. classification, regression) algorithms can cause subtle adverse behaviors during cross-validation that may not be initially apparent. In particular, we focus on the problem of estimating the out-of-cluster (OOC) prediction loss given an approximate clustering with probabilistic error rate $p_0$. Traditional cross-validation techniques exhibit significant empirical bias in this setting, and the few attempts to estimate and correct for these effects are intractable on larger datasets. Further, no previous work has been able to characterize the conditions under which these empirical effects occur, and if they do, what properties they have. We precisely answer these questions by providing theoretical properties which hold in various settings, and prove that expected out-of-cluster loss behavior rapidly decays with even minor clustering errors. Fortunately, we are able to leverage these same properties to construct hypothesis tests and scalable estimators necessary for correcting the problem. Empirical results on benchmark datasets validate our theoretical results and demonstrate how scaling techniques provide solutions to new classes of problems.


Early Prediction of Post-acute Care Discharge Disposition Using Predictive Analytics: Preponing Prior Health Insurance Authorization Thus Reducing the Inpatient Length of Stay

arXiv.org Artificial Intelligence

Objective: A patient medical insurance coverage plays an essential role in determining the post-acute care (PAC) discharge disposition. The prior health insurance authorization process postpones the PAC discharge disposition, increases the inpatient length of stay, and effects patient health. Our study implements predictive analytics for the early prediction of the PAC discharge disposition to reduce the deferments caused by prior health insurance authorization, the inpatient length of stay and inpatient stay expenses. Methodology: We conducted a group discussion involving 25 patient care facilitators (PCFs) and two registered nurses (RNs) and retrieved 1600 patient data records from the initial nursing assessment and discharge notes to conduct a retrospective analysis of PAC discharge dispositions using predictive analytics. Results: The chi-squared automatic interaction detector (CHAID) algorithm enabled the early prediction of the PAC discharge disposition, accelerated the prior health insurance process, decreased the inpatient length of stay by an average of 22.22%, and reduced inpatient stay expenses by \$1,974 for state government hospitals, \$2,346 for non-profit hospitals and \$1,798 for for-profit hospitals per day. The CHAID algorithm produced an overall accuracy of 84.16% and an area under the receiver operating characteristic (ROC) curve value of 0.81. Conclusion: The early prediction of PAC discharge dispositions can condense the PAC deferment caused by the prior health insurance authorization process and simultaneously minimize the inpatient length of stay and related expenses incurred by the hospital.


Robustness to Out-of-Distribution Inputs via Task-Aware Generative Uncertainty

arXiv.org Machine Learning

Deep learning provides a powerful tool for machine perception when the observations resemble the training data. However, real-world robotic systems must react intelligently to their observations even in unexpected circumstances. This requires a system to reason about its own uncertainty given unfamiliar, out-of-distribution observations. Approximate Bayesian approaches are commonly used to estimate uncertainty for neural network predictions, but can struggle with out-of-distribution observations. Generative models can in principle detect out-of-distribution observations as those with a low estimated density. However, the mere presence of an out-of-distribution input does not by itself indicate an unsafe situation. In this paper, we present a method for uncertainty-aware robotic perception that combines generative modeling and model uncertainty to cope with uncertainty stemming from out-of-distribution states. Our method estimates an uncertainty measure about the model's prediction, taking into account an explicit (generative) model of the observation distribution to handle out-of-distribution inputs. This is accomplished by probabilistically projecting observations onto the training distribution, such that out-of-distribution inputs map to uncertain in-distribution observations, which in turn produce uncertain task-related predictions, but only if task-relevant parts of the image change. We evaluate our method on an action-conditioned collision prediction task with both simulated and real data, and demonstrate that our method of projecting out-of-distribution observations improves the performance of four standard Bayesian and non-Bayesian neural network approaches, offering more favorable trade-offs between the proportion of time a robot can remain autonomous and the proportion of impending crashes successfully avoided.


Advancing the State of the Art in Open Domain Dialog Systems through the Alexa Prize

arXiv.org Artificial Intelligence

Building open domain conversational systems that allow users to have engaging conversations on topics of their choice is a challenging task. Alexa Prize was launched in 2016 to tackle the problem of achieving natural, sustained, coherent and engaging open-domain dialogs. In the second iteration of the competition in 2018, university teams advanced the state of the art by using context in dialog models, leveraging knowledge graphs for language understanding, handling complex utterances, building statistical and hierarchical dialog managers, and leveraging model-driven signals from user responses. The 2018 competition also included the provision of a suite of tools and models to the competitors including the CoBot (conversational bot) toolkit, topic and dialog act detection models, conversation evaluators, and a sensitive content detection model so that the competing teams could focus on building knowledge-rich, coherent and engaging multi-turn dialog systems. This paper outlines the advances developed by the university teams as well as the Alexa Prize team to achieve the common goal of advancing the science of Conversational AI. We address several key open-ended problems such as conversational speech recognition, open domain natural language understanding, commonsense reasoning, statistical dialog management and dialog evaluation. These collaborative efforts have driven improved experiences by Alexa users to an average rating of 3.61, median duration of 2 mins 18 seconds, and average turns to 14.6, increases of 14%, 92%, 54% respectively since the launch of the 2018 competition. For conversational speech recognition, we have improved our relative Word Error Rate by 55% and our relative Entity Error Rate by 34% since the launch of the Alexa Prize. Socialbots improved in quality significantly more rapidly in 2018, in part due to the release of the CoBot toolkit, with new entrants attaining an average rating of 3.35 just 1 week into the semifinals, compared to 9 weeks in the 2017 competition.