Performance Analysis
MIDAS: Microcluster-Based Detector of Anomalies in Edge Streams
Bhatia, Siddharth, Hooi, Bryan, Yoon, Minji, Shin, Kijung, Faloutsos, Christos
Given a stream of graph edges from a dynamic graph, how can we assign anomaly scores to edges in an online manner, for the purpose of detecting unusual behavior, using constant time and memory? Existing approaches aim to detect individually surprising edges. In this work, we propose MIDAS, which focuses on detecting microcluster anomalies, or suddenly arriving groups of suspiciously similar edges, such as lockstep behavior, including denial of service attacks in network traffic data. MIDAS has the following properties: (a) it detects microcluster anomalies while providing theoretical guarantees about its false positive probability; (b) it is online, thus processing each edge in constant time and constant memory, and also processes the data 108-505 times faster than state-of-the-art approaches; (c) it provides 46%-52% higher accuracy (in terms of AUC) than state-of-the-art approaches.
When Cross-Validation is More Powerful than Regularization
Regularization is a way of avoiding overfit by restricting the magnitude of model coefficients (or in deep learning, node weights). A simple example of regularization is the use of ridge or lasso regression to fit linear models in the presence of collinear variables or (quasi-)separation. The intuition is that smaller coefficients are less sensitive to idiosyncracies in the training data, and hence, less likely to overfit. Cross-validation is a way to safely reuse training data in nested model situations. This includes both the case of setting hyperparameters before fitting a model, and the case of fitting models (let's call them base learners) that are then used as variables in downstream models, as shown in Figure 1.
Resampling Methods: Bootstrap vs jackknife
Resampling is a way to reuse data to generate new, hypothetical samples (called resamples) that are representative of an underlying population. Two popular tools are the bootstrap and jackknife. Although they have many similarities (e.g. they both can estimate precision for an estimator θ), they do have a few notable differences. Bootstrapping is the most popular resampling method today. It uses sampling with replacement to estimate the sampling distribution for a desired estimator.
On the design of convolutional neural networks for automatic detection of Alzheimer's disease
Liu, Sheng, Yadav, Chhavi, Fernandez-Granda, Carlos, Razavian, Narges
Early detection is a crucial goal in the study of Alzheimer's Disease (AD). In this work, we describe several techniques to boost the performance of 3D convolutional neural networks trained to detect AD using structural brain MRI scans. Specifically, we provide evidence that (1) instance normalization outperforms batch normalization, (2) early spatial downsampling negatively affects performance, (3) widening the model brings consistent gains while increasing the depth does not, and (4) incorporating age information yields moderate improvement. Together, these insights yield an increment of approximately 14% in test accuracy over existing models when distinguishing between patients with AD, mild cognitive impairment, and controls in the ADNI dataset. Similar performance is achieved on an independent dataset.
Human-centric Metric for Accelerating Pathology Reports Annotation
Ma, Ruibin, Chen, Po-Hsuan Cameron, Li, Gang, Weng, Wei-Hung, Lin, Angela, Gadepalli, Krishna, Cai, Yuannan
Pathology reports contain useful information such as the main involved organ, diagnosis, etc. These information can be identified from the free text reports and used for large-scale statistical analysis or serve as annotation for other modalities such as pathology slides images. However, manual classification for a huge number of reports on multiple tasks is labor-intensive. In this paper, we have developed an automatic text classifier based on BERT and we propose a human-centric metric to evaluate the model. According to the model confidence, we identify low-confidence cases that require further expert annotation and high-confidence cases that are automatically classified. We report the percentage of low-confidence cases and the performance of automatically classified cases. On the high-confidence cases, the model achieves classification accuracy comparable to pathologists. This leads a potential of reducing 80% to 98% of the manual annotation workload.
A 6 Step Field Guide for Building Machine Learning Projects
A 6 Step Field Guide for Building Machine Learning Projects Have data and want to know how you can use machine learning with it? Sep 21 · 19 min read I listened to Korn's new album on repeat for 6-hours the other day and wrote out a list of things I think about when it comes to the modelling phase of machine learning projects. Thank you Sam Bourke for the photo. The media makes it sound like magic. Reading this article will change that. It will give you an overview of the most common types of problems machine learning can be used for. And at the same time give you a framework to approach your future machine learning proof of concept projects. How is machine learning, artificial intelligence and data science different? These three topics can be hard to understand because there are no formal definitions. Even after being a machine learning engineer for over a year, I don't have a good answer to this question. I'd be suspicious of anyone who claims they do. To avoid confusion, we'll keep it simple. For this article, you can consider machine learning the process of finding patterns in data to understand something more or to predict some kind of future event. The following steps have a bias towards building something and seeing how it works. You may start a project by collecting data, model it, realise the data you collected was poor, go back to collecting data, model it again, find a good model, deploy it, find it doesn't work, make another model, deploy it, find it doesn't work again, go back to data collection.
Systematic Comparison of the Influence of Different Data Preprocessing Methods on the Classification of Gait Using Machine Learning
Burdack, Johannes, Horst, Fabian, Giesselbach, Sven, Hassan, Ibrahim, Daffner, Sabrina, Schöllhorn, Wolfgang I.
Human movements are characterized by highly non-linear and multi-dimensional interactions within the motor system. Recently, an increasing emphasis on machine-learning applications has led to a significant contribution to the field of gait analysis e.g. in increasing the classification accuracy. In order to ensure the generalizability of the machine-learning models, different data preprocessing steps are usually carried out to process the measured raw data before the classifications. In the past, various methods have been used for each of these preprocessing steps. However, there are hardly any standard procedures or rather systematic comparisons of these different methods and their impact on the classification accuracy. Therefore, the aim of this analysis is to compare different combinations of commonly applied data preprocessing steps and test their effects on the classification accuracy of gait patterns. A publicly available dataset on intra-individual changes of gait patterns was used for this analysis. Forty-two healthy subjects performed 6 sessions of 15 gait trials for one day. For each trial, two force plates recorded the 3D ground reaction forces (GRF). The data was preprocessed with the following steps: GRF filtering, time derivative, time normalization, data reduction, weight normalization and data scaling. Subsequently, combinations of all methods from each individual preprocessing step were analyzed and compared with respect to their prediction accuracy in a six-session classification using Support Vector Machines, Random Forest Classifiers and Multi-Layer Perceptrons. In conclusion, the present results provide first domain-specific recommendations for commonly applied data preprocessing methods and might help to build more comparable and more robust classification models based on machine learning that are suitable for a practical application.
Kernel Dependence Regularizers and Gaussian Processes with Applications to Algorithmic Fairness
Li, Zhu, Perez-Suay, Adrian, Camps-Valls, Gustau, Sejdinovic, Dino
Current adoption of machine learning in industrial, societal and economical activities has raised concerns about the fairness, equity and ethics of automated decisions. Predictive models are often developed using biased datasets and thus retain or even exacerbate biases in their decisions and recommendations. Removing the sensitive covariates, such as gender or race, is insufficient to remedy this issue since the biases may be retained due to other related covariates. We present a regularization approach to this problem that trades off predictive accuracy of the learned models (with respect to biased labels) for the fairness in terms of statistical parity, i.e. independence of the decisions from the sensitive covariates. In particular, we consider a general framework of regularized empirical risk minimization over reproducing kernel Hilbert spaces and impose an additional regularizer of dependence between predictors and sensitive covariates using kernel-based measures of dependence, namely the Hilbert-Schmidt Independence Criterion (HSIC) and its normalized version. This approach leads to a closed-form solution in the case of squared loss, i.e. ridge regression. Moreover, we show that the dependence regularizer has an interpretation as modifying the corresponding Gaussian process (GP) prior. As a consequence, a GP model with a prior that encourages fairness to sensitive variables can be derived, allowing principled hyperparameter selection and studying of the relative relevance of covariates under fairness constraints. Experimental results in synthetic examples and in real problems of income and crime prediction illustrate the potential of the approach to improve fairness of automated decisions.
Meta Answering for Machine Reading
Borschinger, Benjamin, Boyd-Graber, Jordan, Buck, Christian, Bulian, Jannis, Ciaramita, Massimiliano, Huebscher, Michelle Chen, Gajewski, Wojciech, Kilcher, Yannic, Nogueira, Rodrigo, Saralegu, Lierni Sestorain
We investigate a framework for machine reading, inspired by real world information-seeking problems, where a meta question answering system interacts with a black box environment. The environment encapsulates a competitive machine reader based on BERT, providing candidate answers to questions, and possibly some context. To validate the realism of our formulation, we ask humans to play the role of a meta-answerer. With just a small snippet of text around an answer, humans can outperform the machine reader, improving recall. Similarly, a simple machine meta-answerer outperforms the environment, improving both precision and recall on the Natural Questions dataset. The system relies on joint training of answer scoring and the selection of conditioning information.
In Vitro Fertilization (IVF) Cumulative Pregnancy Rate Prediction from Basic Patient Characteristics
Zhang, Bo, Cui, Yuqi, Wang, Meng, Li, Jingjing, Jin, Lei, Wu, Dongrui
Tens of millions of women suffer from infertility worldwide each year. In vitro fertilization (IVF) is the best choice for many such patients. However, IVF is expensive, time-consuming, and both physically and emotionally demanding. The first question that a patient usually asks before the IVF is how likely she will conceive, given her basic medical examination information. This paper proposes three approaches to predict the cumulative pregnancy rate after multiple oocyte pickup cycles. Experiments on 11,190 patients showed that first clustering the patients into different groups and then building a support vector machine model for each group can achieve the best overall performance. Our model could be a quick and economic approach for reliably estimating the cumulative pregnancy rate for a patient, given only her basic medical examination information, well before starting the actual IVF procedure. The predictions can help the patient make optimal decisions on whether to use her own oocyte or donor oocyte, how many oocyte pickup cycles she may need, whether to use embryo frozen, etc. They will also reduce the patient's cost and time to pregnancy, and improve her quality of life.