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Machine learning to predict the long-term risk of myocardial infarction and cardiac death based on clinical risk, coronary calcium, and epicardial adipose tissue: a prospective study

#artificialintelligence

Our aim was to evaluate the performance of machine learning (ML), integrating clinical parameters with coronary artery calcium (CAC), and automated epicardial adipose tissue (EAT) quantification, for the prediction of long-term risk of myocardial infarction (MI) and cardiac death in asymptomatic subjects. Our study included 1912 asymptomatic subjects [1117 (58.4%) male, age: 55.8 9.1 years] from the prospective EISNER trial with long-term follow-up after CAC scoring. EAT volume and density were quantified using a fully automated deep learning method. ML extreme gradient boosting was trained using clinical co-variates, plasma lipid panel measurements, risk factors, CAC, aortic calcium, and automated EAT measures, and validated using repeated 10-fold cross validation. During mean follow-up of 14.5 2 years, 76 events of MI and/or cardiac death occurred. ML obtained a significantly higher AUC than atherosclerotic cardiovascular disease (ASCVD) risk and CAC score for predicting events (ML: 0.82; ASCVD: 0.77; CAC: 0.77, P 0.05 for all). Subjects with a higher ML score (by Youden's index) had high hazard of suffering events (HR: 10.38, P 0.001); the relationships persisted in multivariable analysis including ASCVD-risk and CAC measures (HR: 2.94, P 0.005). Age, ASCVD-risk, and CAC were prognostically important for both genders. Systolic blood pressure was more important than cholesterol in women, and the opposite in men.


Practical Solutions for Machine Learning Safety in Autonomous Vehicles

arXiv.org Machine Learning

Autonomous vehicles rely on machine learning to solve challenging tasks in perception and motion planning. However, automotive software safety standards have not fully evolved to address the challenges of machine learning safety such as interpretability, verification, and performance limitations. In this paper, we review and organize practical machine learning safety techniques that can complement engineering safety for machine learning based software in autonomous vehicles. Our organization maps safety strategies to state-of-the-art machine learning techniques in order to enhance dependability and safety of machine learning algorithms. We also discuss security limitations and user experience aspects of machine learning components in autonomous vehicles.


Features or Shape? Tackling the False Dichotomy of Time Series Classification

arXiv.org Machine Learning

Time series classification is an important task in its own right, and it is often a precursor to further downstream analytics. To date, virtually all works in the literature have used either shape - based classification using a distance measure or feature - based classification after finding some suitable features for the do main . I t seems to be underappreciated that in many datasets it is the case that some classes are best discriminated with fea tures, while others are best discriminated with shape. Thus, making the shape vs. feature choice will condemn us to poor results, at least for some classes. In this work, we propose a new model for classifying time series that allows the use of both shape and feature - based measures, when warranted . Our algorithm automatically decides which approach is best for which class, and at query time chooses which classifier to trust the most. We evaluate our idea on real world datasets and demonstrate that our ideas produce statistically significant improvement in classification accuracy .


Contextual Outlier Detection in Continuous-Time Event Sequences

arXiv.org Machine Learning

Continuous-time event sequences represent discrete events occurring in continuous time. Such sequences arise frequently in real-life and cover a wide variety of natural events, such as earthquakes, or events corresponding to human actions, such as medical administrations. Usually we expect the event sequences to follow some regular pattern over time. However, sometimes these regular patterns may be interrupted by unexpected absence or unexpected occurrences of events. Identification of these unexpected cases can be very important as they may point to abnormal situations that need human attention. In this work, we study and develop methods for detecting outliers in continuous-time event sequences, including unexpected absence and unexpected occurrences of events. Since the patterns that event sequences tend to follow may change in different contexts, we develop outlier detection methods based on point processes that take into account different contexts. Our outlier scoring methods are based on Bayesian decision theory and hypothesis testing with theoretical guarantees. To test the performance of the methods, we conduct experiments on both synthetic data and real-world clinical data and show the effectiveness of the proposed methods.


Mislabel Detection of Finnish Publication Ranks

arXiv.org Machine Learning

Finland, in the spirit of Norway and Denmark, introduced ranking system for academic publication channels (referring to scientific journals, conference series, book publishers etc.) called as Jufo (i.e. "Julkaisufoorumi" in Finnish, "Publication Forum" in English) in 2010, together with the renewed university legislation. The ranking of a publication channel, ranging from 0 (non-peer- reviewed) to 3 (most distinguished academic publication forums), is decided by a specially nominated panel of a particular scientific discipline. These panels decide the rankings based on their academic expertise in regular meetings. Because the rankings are directly linked to the allocated funding of the universities, there has been and is a lot of discussion about the fairness and objectivity of the ranks. A versatile analysis of the 2015 Jufo-rankings was done in [10]. There, by using association rule mining, decision trees, and confusion matrices with respect to Norwegian and Danish ranks, it was shown that most of the expert-based rankings could be predicted and explained with machine learning methods. Moreover, it was found out that those publication channels, for which the Finnish expert-based rank is higher than the estimated one, are characterized by higher publication activity or recent upgrade of the rank. Hence, the outcomes of the system, the publication ranks, need to be assessed and evaluated regularly and rigorously. 1


Per-sample Prediction Intervals for Extreme Learning Machines

arXiv.org Machine Learning

Prediction intervals in supervised Machine Learning bound the region where the true outputs of new samples may fall. They are necessary in the task of separating reliable predictions of a trained model from near random guesses, minimizing the rate of False Positives, and other problem-specific tasks in applied Machine Learning. Many real problems have heteroscedastic stochastic outputs, which explains the need of input-dependent prediction intervals. This paper proposes to estimate the input-dependent prediction intervals by a separate Extreme Learning Machine model, using variance of its predictions as a correction term accounting for the model uncertainty. The variance is estimated from the model's linear output layer with a weighted Jackknife method. The methodology is very fast, robust to heteroscedastic outputs, and handles both extremely large datasets and insufficient amount of training data.


Interactive Open-Ended Learning for 3D Object Recognition

arXiv.org Artificial Intelligence

The thesis contributes in several important ways to the research area of 3D object category learning and recognition. To cope with the mentioned limitations, we look at human cognition, in particular at the fact that human beings learn to recognize object categories ceaselessly over time. This ability to refine knowledge from the set of accumulated experiences facilitates the adaptation to new environments. Inspired by this capability, we seek to create a cognitive object perception and perceptual learning architecture that can learn 3D object categories in an open-ended fashion. In this context, ``open-ended'' implies that the set of categories to be learned is not known in advance, and the training instances are extracted from actual experiences of a robot, and thus become gradually available, rather than being available since the beginning of the learning process. In particular, this architecture provides perception capabilities that will allow robots to incrementally learn object categories from the set of accumulated experiences and reason about how to perform complex tasks. This framework integrates detection, tracking, teaching, learning, and recognition of objects. An extensive set of systematic experiments, in multiple experimental settings, was carried out to thoroughly evaluate the described learning approaches. Experimental results show that the proposed system is able to interact with human users, learn new object categories over time, as well as perform complex tasks. The contributions presented in this thesis have been fully implemented and evaluated on different standard object and scene datasets and empirically evaluated on different robotic platforms.


Feature-wise change detection and robust indoor positioning using RANSAC-like approach

arXiv.org Machine Learning

Fingerprinting-based positioning, one of the promising indoor positioning solutions, has been broadly explored owing to the pervasiveness of sensor-rich mobile devices, the prosperity of opportunistically measurable location-relevant signals and the progress of data-driven algorithms. One critical challenge is to controland improve the quality of the reference fingerprint map (RFM), which is built at the offline stage and applied for online positioning. The key concept concerningthe quality control of the RFM is updating the RFM according to the newly measured data. Though varies methods have been proposed for adapting the RFM, they approach the problem by introducing extra-positioning schemes (e.g. PDR orUGV) and directly adjust the RFM without distinguishing whether critical changes have occurred. This paper aims at proposing an extra-positioning-free solution by making full use of the redundancy of measurable features. Loosely inspired by random sampling consensus (RANSAC), arbitrarily sampled subset of features from the online measurement are used for generating multi-resamples, which areused for estimating the intermediate locations. In the way of resampling, it can mitigate the impact of the changed features on positioning and enables to retrieve accurate location estimation. The users location is robustly computed by identifying the candidate locations from these intermediate ones using modified Jaccardindex (MJI) and the feature-wise change belief is calculated according to the world model of the RFM and the estimated variability of features. In order to validate our proposed approach, two levels of experimental analysis have been carried out. On the simulated dataset, the average change detection accuracy is about 90%. Meanwhile, the improvement of positioning accuracy within 2 m is about 20% by dropping out the features that are detected as changed when performing positioning comparing to that of using all measured features for location estimation. On the long-term collected dataset, the average change detection accuracy is about 85%.


Comparison of Classification Methods for Very High-Dimensional Data in Sparse Random Projection Representation

arXiv.org Machine Learning

Machine learning is a mature scientific field with lots of theoretical results, established algorithms and processes that address various supervised and unsupervised problems using the provided data. In theoretical research, such data is generated in a convenient way, or various methods are compared on standard benchmark problems - where data samples are represented as dense real-valued vectors of fixed and relatively low length. Practical applications represented by such standard datasets can successfully be solved by one of a myriad of existing machine learning methods and their implementations. However, the most impact of machine learning is currently in the big data field with the problems that are well explained in natural language ("Find malicious files", "Is that website safe to browse?") but are hard to encode numerically. Data samples in these problems have distinct features coming from a huge unordered set of possible features. Same approach can cover a frequent case of missing feature values [10, 28].


Neural networks and kernel ridge regression for excited states dynamics of CH$_2$NH$_2^+$: From single-state to multi-state representations and multi-property machine learning models

arXiv.org Machine Learning

Excited-state dynamics simulations are a powerful tool to investigate photo-induced reactions of molecules and materials and provide complementary information to experiments. Since the applicability of these simulation techniques is limited by the costs of the underlying electronic structure calculations, we develop and assess different machine learning models for this task. The machine learning models are trained on {\emph ab initio} calculations for excited electronic states, using the methylenimmonium cation (CH$_2$NH$_2^+$) as a model system. For the prediction of excited-state properties, multiple outputs are desirable, which is straightforward with neural networks but less explored with kernel ridge regression. We overcome this challenge for kernel ridge regression in the case of energy predictions by encoding the electronic states explicitly in the inputs, in addition to the molecular representation. We adopt this strategy also for our neural networks for comparison. Such a state encoding enables not only kernel ridge regression with multiple outputs but leads also to more accurate machine learning models for state-specific properties. An important goal for excited-state machine learning models is their use in dynamics simulations, which needs not only state-specific information but also couplings, i.e., properties involving pairs of states. Accordingly, we investigate the performance of different models for such coupling elements. Furthermore, we explore how combining all properties in a single neural network affects the accuracy. As an ultimate test for our machine learning models, we carry out excited-state dynamics simulations based on the predicted energies, forces and couplings and, thus, show the scopes and possibilities of machine learning for the treatment of electronically excited states.