Performance Analysis
PnPOOD : Out-Of-Distribution Detection for Text Classification via Plug andPlay Data Augmentation
Rawat, Mrinal, Hebbalaguppe, Ramya, Vig, Lovekesh
While Out-of-distribution (OOD) detection has been well explored in computer vision, there have been relatively few prior attempts in OOD detection for NLP classification. In this paper we argue that these prior attempts do not fully address the OOD problem and may suffer from data leakage and poor calibration of the resulting models. We present PnPOOD, a data augmentation technique to perform OOD detection via out-of-domain sample generation using the recently proposed Plug and Play Language Model (Dathathri et al., 2020). Our method generates high quality discriminative samples close to the class boundaries, resulting in accurate OOD detection at test time. We demonstrate that our model outperforms prior models on OOD sample detection, and exhibits lower calibration error on the 20 newsgroup text and Stanford Sentiment Treebank dataset (Lang, 1995; Socheret al., 2013). We further highlight an important data leakage issue with datasets used in prior attempts at OOD detection, and share results on a new dataset for OOD detection that does not suffer from the same problem.
Predicting Cancer Using Supervised Machine Learning: Mesothelioma
Background: Pleural Mesothelioma (PM) is an unusual, belligerent tumor that rapidly develops into cancer in the pleura of the lungs. Pleural Mesothelioma is a common type of Mesothelioma that accounts for about 75% of all Mesothelioma diagnosed yearly in the U.S. Diagnosis of Mesothelioma takes several months and is expensive. Given the risk and constraints associated with PM diagnosis, early identification of this ailment is essential for patient health. Objective: In this study, we use artificial intelligence algorithms recommending the best fit model for early diagnosis and prognosis of MPM. Methods: We retrospectively retrieved patients clinical data collected by Dicle University, Turkey, and applied multilayered perceptron (MLP), voted perceptron (VP), Clojure classifier (CC), kernel logistic regression (KLR), stochastic gradient decent SGD), adaptive boosting (AdaBoost), Hoeffding tree (VFDT), and primal estimated sub-gradient solver for support vector machine (s-Pegasos). We evaluated the models, compared and tested using paired T-test (corrected) at 0.05 significance based on their respective classification accuracy, f-measure, precision, recall, root mean squared error, receivers characteristic curve (ROC), and precision-recall curve (PRC). Results: In phase-1, SGD, AdaBoost. M1, KLR, MLP, VFDT generate optimal results with the highest possible performance measures. In phase 2, AdaBoost, with a classification accuracy of 71.29%, outperformed all other algorithms. C-reactive protein, platelet count, duration of symptoms, gender, and pleural protein were found to be the most relevant predictors that can prognosticate Mesothelioma. Conclusion: This study confirms that data obtained from Biopsy and imagining tests are strong predictors of Mesothelioma but are associated with a high cost; however, they can identify Mesothelioma with optimal accuracy.
TorchXRayVision: A library of chest X-ray datasets and models
Cohen, Joseph Paul, Viviano, Joseph D., Bertin, Paul, Morrison, Paul, Torabian, Parsa, Guarrera, Matteo, Lungren, Matthew P, Chaudhari, Akshay, Brooks, Rupert, Hashir, Mohammad, Bertrand, Hadrien
TorchXRayVision is an open source software library for working with chest X-ray datasets and deep learning models. It provides a common interface and common pre-processing chain for a wide set of publicly available chest X-ray datasets. In addition, a number of classification and representation learning models with different architectures, trained on different data combinations, are available through the library to serve as baselines or feature extractors.
Metrics That We Measure - Measuring Efficacy of Your Machine Learning Models
Have we identified the perfect metrics to measure the efficacy of our machine learning models? A perfect metric - does that even exist. A recent feed from LinkedIn on measuring metrics caught my attention, It is a bit opinionated claim from the author with substantial shreds of evidence and arguments. His post drew attention from many and made it a valuable repository of information and views from diverse people. I thank Nikhil and the LinkedIn community who participated in the discussion for inspiring me to write this post.
DSOR: A Scalable Statistical Filter for Removing Falling Snow from LiDAR Point Clouds in Severe Winter Weather
For autonomous vehicles to viably replace human drivers they must contend with inclement weather. Falling rain and snow introduce noise in LiDAR returns resulting in both false positive and false negative object detections. In this article we introduce the Winter Adverse Driving dataSet (WADS) collected in the snow belt region of Michigan's Upper Peninsula. WADS is the first multi-modal dataset featuring dense point-wise labeled sequential LiDAR scans collected in severe winter weather; weather that would cause an experienced driver to alter their driving behavior. We have labelled and will make available over 7 GB or 3.6 billion labelled LiDAR points out of over 26 TB of total LiDAR and camera data collected. We also present the Dynamic Statistical Outlier Removal (DSOR) filter, a statistical PCL-based filter capable or removing snow with a higher recall than the state of the art snow de-noising filter while being 28\% faster. Further, the DSOR filter is shown to have a lower time complexity compared to the state of the art resulting in an improved scalability. Our labeled dataset and DSOR filter will be made available at https://bitbucket.org/autonomymtu/dsor_filter
Use of machine learning in geriatric clinical care for chronic diseases: a systematic literature review
Choudhury, Avishek, Renjilian, Emily, Asan, Onur
Objectives-Geriatric clinical care is a multidisciplinary assessment designed to evaluate older patients (age 65 years and above) functional ability, physical health, and cognitive wellbeing. The majority of these patients suffer from multiple chronic conditions and require special attention. Recently, hospitals utilize various artificial intelligence (AI) systems to improve care for elderly patients. The purpose of this systematic literature review is to understand the current use of AI systems, particularly machine learning (ML), in geriatric clinical care for chronic diseases. Materials and Methods-We restricted our search to eight databases, namely PubMed, WorldCat, MEDLINE, ProQuest, ScienceDirect, SpringerLink, Wiley, and ERIC, to analyze research articles published in English between January 2010 and June 2019. We focused on studies that used ML algorithms in the care of geriatrics patients with chronic conditions. Results-We identified 35 eligible studies and classified in three groups-psychological disorder (n=22), eye diseases (n=6), and others (n=7). This review identified the lack of standardized ML evaluation metrics and the need for data governance specific to health care applications. Conclusion- More studies and ML standardization tailored to health care applications are required to confirm whether ML could aid in improving geriatric clinical care.
Conical Classification For Computationally Efficient One-Class Topic Determination
As the Internet grows in size, so does the amount of text based information that exists. For many application spaces it is paramount to isolate and identify texts that relate to a particular topic. While one-class classification would be ideal for such analysis, there is a relative lack of research regarding efficient approaches with high predictive power. By noting that the range of documents we wish to identify can be represented as positive linear combinations of the Vector Space Model representing our text, we propose Conical classification, an approach that allows us to identify if a document is of a particular topic in a computationally efficient manner. We also propose Normal Exclusion, a modified version of Bi-Normal Separation that makes it more suitable within the one-class classification context. We show in our analysis that our approach not only has higher predictive power on our datasets, but is also faster to compute.
Causal Discovery in Linear Structural Causal Models with Deterministic Relations
Yang, Yuqin, Nafea, Mohamed, Ghassami, AmirEmad, Kiyavash, Negar
Linear structural causal models (SCMs) -- in which each observed variable is generated by a subset of the other observed variables as well as a subset of the exogenous sources -- are pervasive in causal inference and casual discovery. However, for the task of causal discovery, existing work almost exclusively focus on the submodel where each observed variable is associated with a distinct source with non-zero variance. This results in the restriction that no observed variable can deterministically depend on other observed variables or latent confounders. In this paper, we extend the results on structure learning by focusing on a subclass of linear SCMs which do not have this property, i.e., models in which observed variables can be causally affected by any subset of the sources, and are allowed to be a deterministic function of other observed variables or latent confounders. This allows for a more realistic modeling of influence or information propagation in systems. We focus on the task of causal discovery form observational data generated from a member of this subclass. We derive a set of necessary and sufficient conditions for unique identifiability of the causal structure. To the best of our knowledge, this is the first work that gives identifiability results for causal discovery under both latent confounding and deterministic relationships. Further, we propose an algorithm for recovering the underlying causal structure when the aforementioned conditions are satisfied. We validate our theoretical results both on synthetic and real datasets.
Robust and efficient change point detection using novel multivariate rank-energy GoF test
Masud, Shoaib Bin, Aeron, Shuchin
In this paper, we use and further develop upon a recently proposed multivariate, distribution-free Goodness-of-Fit (GoF) test based on the theory of Optimal Transport (OT) called the Rank Energy (RE) [1], for non-parametric and unsupervised Change Point Detection (CPD) in multivariate time series data. We show that directly using RE leads to high sensitivity to very small changes in distributions (causing high false alarms) and it requires large sample complexity and huge computational cost. To alleviate these drawbacks, we propose a new GoF test statistic called as soft-Rank Energy (sRE) that is based on entropy regularized OT and employ it towards CPD. We discuss the advantages of using sRE over RE and demonstrate that the proposed sRE based CPD outperforms all the existing methods in terms of Area Under the Curve (AUC) and F1-score on real and synthetic data sets.
False Positive Detection and Prediction Quality Estimation for LiDAR Point Cloud Segmentation
Colling, Pascal, Rottmann, Matthias, Roese-Koerner, Lutz, Gottschalk, Hanno
We present a novel post-processing tool for semantic segmentation of LiDAR point cloud data, called LidarMetaSeg, which estimates the prediction quality segmentwise. For this purpose we compute dispersion measures based on network probability outputs as well as feature measures based on point cloud input features and aggregate them on segment level. These aggregated measures are used to train a meta classification model to predict whether a predicted segment is a false positive or not and a meta regression model to predict the segmentwise intersection over union. Both models can then be applied to semantic segmentation inferences without knowing the ground truth. In our experiments we use different LiDAR segmentation models and datasets and analyze the power of our method. We show that our results outperform other standard approaches.