The interaction between proteins and nucleic acids is crucial for processes that sustain cellular function, including DNA maintenance and the regulation of gene expression and translation. Amino acid mutat ions in protein - nucleic acid complexes often lead to vital disease s . Experimental techniques have their own specific limitations in predicting mutational effects in protein - nucleic acid complexes . In this study, we compiled a large dataset of 1951 mutations including both protein - DNA and protein - RNA complexes and integrate d structural and sequential features to build a deep learning - based regression model named DeepPNI . This model estimates mutation - induced binding free energy changes in protein - nucleic aci d complexes . The structural feature s are encoded via edge - aware RGCN and the sequential feature s are extracted using protein language model ESM - 2. W e have achieved a high average Pearson correlation coeffi cient (PCC) of 0.76 in the large dataset via five - fold cross - validation. Consistent performance across individual dataset of protein - DNA, protein - RNA complexes, and different experimental temperature split dataset make the model g eneralizable . Our model showed g ood performance in complex - based five - fold cross - validation, which prove d its robustness. In addition, DeepPNI outperform ed in e xternal dataset validation, and compar ison with existing tools .

Online pornography and gambling have consistently posed regulatory challenges for governments, threatening both personal assets and privacy. Therefore, it is imperative to research the classification of the newly registered Pornographic and Gambling Domain Names (PGDN). However, scholarly investigation into this topic is limited. Previous efforts in PGDN classification pursue high accuracy using ideal sample data, while others employ up-to-date data from real-world scenarios but achieve lower classification accuracy. This paper introduces the Real-PGDN method, which accomplishes a complete process of timely and comprehensive real-data crawling, feature extraction with feature-missing tolerance, precise PGDN classification, and assessment of application effects in actual scenarios. Our two-level classifier, which integrates CoSENT (BERT-based), Multilayer Perceptron (MLP), and traditional classification algorithms, achieves a 97.88% precision. The research process amasses the NRD2024 dataset, which contains continuous detection information over 20 days for 1,500,000 newly registered domain names across 6 directions. Results from our case study demonstrate that this method also maintains a forecast precision of over 70% for PGDN that are delayed in usage after registration.

ASD is a complicated neurodevelopmental disorder marked by variation in symptom presentation and neurological underpinnings, making early and objective diagnosis extremely problematic. This paper presents a Graph Convolutional Network (GCN) model, incorporating Chebyshev Spectral Graph Convolution and Graph Attention Networks (GAT), to increase the classification accuracy of ASD utilizing multimodal neuroimaging and phenotypic data. Leveraging the ABIDE I dataset, which contains resting-state functional MRI (rs-fMRI), structural MRI (sMRI), and phenotypic variables from 870 patients, the model leverages a multi-branch architecture that processes each modality individually before merging them via concatenation. Graph structure is encoded using site-based similarity to generate a population graph, which helps in understanding relationship connections across individuals. Chebyshev polynomial filters provide localized spectral learning with lower computational complexity, whereas GAT layers increase node representations by attention-weighted aggregation of surrounding information. The proposed model is trained using stratified five-fold cross-validation with a total input dimension of 5,206 features per individual. Extensive trials demonstrate the enhanced model's superiority, achieving a test accuracy of 74.82\% and an AUC of 0.82 on the entire dataset, surpassing multiple state-of-the-art baselines, including conventional GCNs, autoencoder-based deep neural networks, and multimodal CNNs.

Accurate long horizon forecasting of particulate matter (PM) concentration fields is essential for operational public health decisions. However, achieving reliable forecasts remains challenging in regions with complex terrain and strong atmospheric dynamics such as East Asia. While foundation models such as Aurora offer global generality, they often miss region-specific dynamics and rely on non-real-time inputs, limiting their practical utility for localized warning systems. T o address this gap, we construct and release the real-world observations and high-resolution CMAQ-OBS dataset for East Asia, reducing regional error by 59.5% and enabling real-time 48-120 hour forecasts critical for public health alerts. However, standard point-wise objectives cannot reflect asymmetric operational costs, where false alarms deteriorate public trust while missed severe events endanger populations. This cost mismatch causes SFT models to over-predict and yield high False Alarm Rates. W e introduce Group-Relative Policy Optimization (GRPO) with class-wise rewards and curriculum rollout to align predictions with operational priorities. Experimental results demonstrate that our framework significantly improves the reliability of the forecast. Compared to the SFT-only baseline, our model reduces the False Alarm Rate by 47.3% while achieving a competitive F1-score, proving its effectiveness for practical, real-world air quality forecasting systems on long lead time scenarios.

Assessing resection margins is central to pathological specimen evaluation and has profound implications for patient outcomes. Current practice employs physical inking, which is applied variably, and cautery artifacts can obscure the true margin on histological sections. We present a virtual inking network (VIN) that autonomously localizes the surgical cut surface on whole-slide images, reducing reliance on inks and standardizing margin-focused review. VIN uses a frozen foundation model as the feature extractor and a compact two-layer multilayer perceptron trained for patch-level classification of cautery-consistent features. The dataset comprised 120 hematoxylin and eosin (H&E) stained slides from 12 human tonsil tissue blocks, resulting in ~2 TB of uncompressed raw image data, where a board-certified pathologist provided boundary annotations. In blind testing with 20 slides from previously unseen blocks, VIN produced coherent margin overlays that qualitatively aligned with expert annotations across serial sections. Quantitatively, region-level accuracy was ~73.3% across the test set, with errors largely confined to limited areas that did not disrupt continuity of the whole-slide margin map. These results indicate that VIN captures cautery-related histomorphology and can provide a reproducible, ink-free margin delineation suitable for integration into routine digital pathology workflows and for downstream measurement of margin distances.

Many real-world scenarios involving streaming information can be represented as temporal graphs, where data flows through dynamic changes in edges over time. Anomaly detection in this context has the objective of identifying unusual temporal connections within the graph structure. Detecting edge anomalies in real time is crucial for mitigating potential risks. Unlike traditional anomaly detection, this task is particularly challenging due to concept drifts, large data volumes, and the need for real-time response. To face these challenges, we introduce ARES, an unsupervised anomaly detection framework for edge streams. ARES combines Graph Neural Networks (GNNs) for feature extraction with Half-Space Trees (HST) for anomaly scoring. GNNs capture both spike and burst anomalous behaviors within streams by embedding node and edge properties in a latent space, while HST partitions this space to isolate anomalies efficiently. ARES operates in an unsupervised way without the need for prior data labeling. To further validate its detection capabilities, we additionally incorporate a simple yet effective supervised thresholding mechanism. This approach leverages statistical dispersion among anomaly scores to determine the optimal threshold using a minimal set of labeled data, ensuring adaptability across different domains. We validate ARES through extensive evaluations across several real-world cyber-attack scenarios, comparing its performance against existing methods while analyzing its space and time complexity.

Clinical notes in Electronic Health Records (EHRs) capture rich temporal information on events, clinician reasoning, and lifestyle factors often missing from structured data. Leveraging them for predictive modeling can be impactful for timely identification of chronic diseases. However, they present core natural language processing (NLP) challenges: long text, irregular event distribution, complex temporal dependencies, privacy constraints, and resource limitations. We present two complementary methods for temporally and contextually grounded risk prediction from longitudinal notes. First, we introduce HiTGNN, a hierarchical temporal graph neural network that integrates intra-note temporal event structures, inter-visit dynamics, and medical knowledge to model patient trajectories with fine-grained temporal granularity. Second, we propose ReVeAL, a lightweight, test-time framework that distills the reasoning of large language models into smaller verifier models. Applied to opportunistic screening for Type 2 Diabetes (T2D) using temporally realistic cohorts curated from private and public hospital corpora, HiTGNN achieves the highest predictive accuracy, especially for near-term risk, while preserving privacy and limiting reliance on large proprietary models. ReVeAL enhances sensitivity to true T2D cases and retains explanatory reasoning. Our ablations confirm the value of temporal structure and knowledge augmentation, and fairness analysis shows HiTGNN performs more equitably across subgroups.

Large vision foundation models have been widely adopted for retinal disease classification without systematic evidence justifying their parameter requirements. In the present work we address two critical questions: First, are large domain-specific foundation models essential, or do compact general-purpose architectures suffice? Second, does specialized retinal pretraining justify its computational cost? To answer this, we benchmark initialization strategies across four retinal imaging classification tasks spanning Optical Coherence Tomography (OCT) and Color Fundus Photography (CFP) modalities: 8-class OCT classification, 3-class diabetic macular edema (DME), 5-class diabetic retinopathy (DR), and 3-class glaucoma (GL) detection. We evaluate 12-13 model configurations per task, including vision transformers (22.8M-86.6M parameters), Swin Transformers (27.6M-28.3M), ConvNeXt (28.6M), and the domain-specific RETFound models (303M), under identical training conditions. Our results challenge prevailing assumptions: First, we demonstrate that pretraining provides universal benefits (5.18-18.41% improvement), scaling with task difficulty. Second, compact architectures (27-29M) dominate Pareto frontiers; SwinV2-tiny achieves top-1 performance on three datasets. Third, RETFound (303M) justifies its computational cost only for challenging DR grading (accuracy of 71.15%), while ImageNet pretraining proves to be sufficient with all other tasks (DME accuracy: 99.24%, OCT accuracy: 97.96%). CFP tasks show larger pretraining accuracy gains (9.13-18.41%) than OCT (5.18%). Thus, the evidence suggests that compact general-purpose models deliver near-optimal performance for most retinal classification tasks; specialized foundation models warranted only for fine-grained discrimination under extreme class imbalance.

We study the behavior of for-profit institutions that broadcast reputations to foster trust among market participants. We develop a theoretical model in which buyers and sellers are matched on a platform to engage in transactions involving a moral hazard: sellers can either faithfully deliver goods after receiving payment, or not. Although the buyer does not know a seller's true type, the platform maintains a reputation system that probabilistically assigns binary reputation signals. Buyers make purchase decisions based on reputation signals, which influence the payoffs to sellers who then adapt their type over time. These market dynamics ultimately shape the platform's profit from commissions on sales. Our analysis reveals that platforms inherently have an incentive for rating inflation, driven by the desire to increase commission. This introduces a second layer of moral hazard: the platform's incentive to distort reputations for its own profit. Such distortion is self-limited by the platform's need to maintain enough accuracy that trustworthy sellers remain in the market, without which rational buyers would refrain from purchases altogether. Nonetheless, the optimal strategy for the platform can be to invest in order to reduce signal accuracy. When the platform can freely set commission fees, however, maximum profit may be achieved by costly investment in an accurate reputation system. These findings highlight the intricate tensions between platform incentives and resulting social utility for marketplace participants.

The rapid expansion of Internet of Things (IoT) deployments across diverse sectors has significantly enhanced operational efficiency, yet concurrently elevated cybersecurity vulnerabilities due to increased exposure to cyber threats. Given the limitations of traditional signature-based Anomaly Detection Systems (ADS) in identifying emerging and zero-day threats, this study investigates the effectiveness of two unsupervised anomaly detection techniques, Isolation Forest (IF) and One-Class Support Vector Machine (OC-SVM), using the TON_IoT thermostat dataset. A comprehensive evaluation was performed based on standard metrics (accuracy, precision, recall, and F1-score) alongside critical resource utilization metrics such as inference time, model size, and peak RAM usage. Experimental results revealed that IF consistently outperformed OC-SVM, achieving higher detection accuracy, superior precision, and recall, along with a significantly better F1-score. Furthermore, Isolation Forest demonstrated a markedly superior computational footprint, making it more suitable for deployment on resource-constrained IoT edge devices. These findings underscore Isolation Forest's robustness in high-dimensional and imbalanced IoT environments and highlight its practical viability for real-time anomaly detection.