Performance Analysis
Plant species richness prediction from DESIS hyperspectral data: A comparison study on feature extraction procedures and regression models
Guo, Yiqing, Mokany, Karel, Ong, Cindy, Moghadam, Peyman, Ferrier, Simon, Levick, Shaun R.
The diversity of terrestrial vascular plants plays a key role in maintaining the stability and productivity of ecosystems. Monitoring species compositional diversity across large spatial scales is challenging and time consuming. The advanced spectral and spatial specification of the recently launched DESIS (the DLR Earth Sensing Imaging Spectrometer) instrument provides a unique opportunity to test the potential for monitoring plant species diversity with spaceborne hyperspectral data. This study provides a quantitative assessment on the ability of DESIS hyperspectral data for predicting plant species richness in two different habitat types in southeast Australia. Spectral features were first extracted from the DESIS spectra, then regressed against on-ground estimates of plant species richness, with a two-fold cross validation scheme to assess the predictive performance. We tested and compared the effectiveness of Principal Component Analysis (PCA), Canonical Correlation Analysis (CCA), and Partial Least Squares analysis (PLS) for feature extraction, and Kernel Ridge Regression (KRR), Gaussian Process Regression (GPR), Random Forest Regression (RFR) for species richness prediction. The best prediction results were r=0.76 and RMSE=5.89 for the Southern Tablelands region, and r=0.68 and RMSE=5.95 for the Snowy Mountains region. Relative importance analysis for the DESIS spectral bands showed that the red-edge, red, and blue spectral regions were more important for predicting plant species richness than the green bands and the near-infrared bands beyond red-edge. We also found that the DESIS hyperspectral data performed better than Sentinel-2 multispectral data in the prediction of plant species richness. Our results provide a quantitative reference for future studies exploring the potential of spaceborne hyperspectral data for plant biodiversity mapping.
Micro, Macro & Weighted Averages of F1 Score, Clearly Explained - KDnuggets
The F1 score (aka F-measure) is a popular metric for evaluating the performance of a classification model. In the case of multi-class classification, we adopt averaging methods for F1 score calculation, resulting in a set of different average scores (macro, weighted, micro) in the classification report. This article looks at the meaning of these averages, how to calculate them, and which one to choose for reporting. Note: Skip this section if you are already familiar with the concepts of precision, recall, and F1 score. Layman definition: Of all the positive predictions I made, how many of them are truly positive?
GitHub - leanderme/sytora: A sophisticated smart symptom search engine
Sytora is a multilingual symptom-disease classification app. Translation is managed through the UMLS coding standard. A multinomial Naive Bayes classifier is trained on a handpicked dataset, which is freely available under CC4.0. Check out sytora.com for a demo. Finding the right diagnosis cannot be achieved by extracting symptoms and running a classification algorithm.
The Department of Homeland Security says it developed a portable gunshot detection system
The Department of Homeland Security (DHS) says its Science and Technology Directorate division has created a portable gunshot detection system with the help of a company called Shooter Detection Systems (SDS). The agency notes that whereas other systems only detect audio, SDS Outdoor can pinpoint flashes of gunshots as well. DHS claims this approach can reduce false positive rates. DHS has not disclosed details about the accuracy of the system. SDS, which is owned by Alarm.com, says its indoor gunshot detection system has a near-100 percent detection rate with fewer than one false alert per 5 million hours of use.
Type I and Type II Errors: What's the Difference? - KDnuggets
Let's illustrate Type I and Type II errors using a binary classification machine learning spam filter. We will assume that we have a labelled dataset of N 315 emails, 244 of which are labelled as spam, and 71 are not-spam. Supposed that we've built a machine learning classification algorithm to learn from this data. Now we would like to evaluate the performance of the machine learning model. How good was the model in correctly detecting the spam vs not-spam emails? We will assume that whenever the model predicts an email to be a spam email, the email will be deleted and saved in the spam folder.
Solving The Class Imbalance Problem
Imbalanced classification is a common problem in machine learning, particularly in the realm of binary classification. This occurs when the training dataset has an unequal distribution of classes, leading to a potential bias in the trained model. Examples of imbalanced classification problems include fraud detection, claim prediction, default prediction, churn prediction, spam detection, anomaly detection, and outlier detection. It is important to address the class imbalance in order to improve the performance of our model and ensure its accuracy. Notice that most, if not all, of the examples, are likely binary classification problems.
Multi-Task Learning with Prior Information
Multi-task learning aims to boost the generalization performance of multiple related tasks simultaneously by leveraging information contained in those tasks. In this paper, we propose a multi-task learning framework, where we utilize prior knowledge about the relations between features. We also impose a penalty on the coefficients changing for each specific feature to ensure related tasks have similar coefficients on common features shared among them. In addition, we capture a common set of features via group sparsity. The objective is formulated as a non-smooth convex optimization problem, which can be solved with various methods, including gradient descent method with fixed stepsize, iterative shrinkage-thresholding algorithm (ISTA) with back-tracking, and its variation -- fast iterative shrinkage-thresholding algorithm (FISTA). In light of the sub-linear convergence rate of the methods aforementioned, we propose an asymptotically linear convergent algorithm with theoretical guarantee. Empirical experiments on both regression and classification tasks with real-world datasets demonstrate that our proposed algorithms are capable of improving the generalization performance of multiple related tasks.
Anxolotl, an Anxiety Companion App -- Stress Detection
Gomes, Nuno, Pato, Matilde, Santos, Pedro, Lourenรงo, Andrรฉ, Rodrigues, Lourenรงo
Stress has a great effect on people's lives that can not be understated. While it can be good, since it helps humans to adapt to new and different situations, it can also be harmful when not dealt with properly, leading to chronic stress. The objective of this paper is developing a stress monitoring solution, that can be used in real life, while being able to tackle this challenge in a positive way. The SMILE data set was provided to team Anxolotl, and all it was needed was to develop a robust model. We developed a supervised learning model for classification in Python, presenting the final result of 64.1% in accuracy and a f1-score of 54.96%. The resulting solution stood the robustness test, presenting low variation between runs, which was a major point for it's possible integration in the Anxolotl app in the future.
Identifying Exoplanets with Deep Learning. V. Improved Light Curve Classification for TESS Full Frame Image Observations
Tey, Evan, Moldovan, Dan, Kunimoto, Michelle, Huang, Chelsea X., Shporer, Avi, Daylan, Tansu, Muthukrishna, Daniel, Vanderburg, Andrew, Dattilo, Anne, Ricker, George R., Seager, S.
ABSTRACT The TESS mission produces a large amount of time series data, only a small fraction of which contain detectable exoplanetary transit signals. Deep learning techniques such as neural networks have proved effective at differentiating promising astrophysical eclipsing candidates from other phenomena such as stellar variability and systematic instrumental effects in an efficient, unbiased and sustainable manner. This paper presents a high quality dataset containing light curves from the Primary Mission and 1st Extended Mission full frame images and periodic signals detected via Box Least Squares (Kovรกcs et al. 2002; Hartman 2012). The dataset was curated using a thorough manual review process then used to train a neural network called Astronet-Triage-v2. On our test set, for transiting/eclipsing events we achieve a 99.6% recall (true positives over all data with positive labels) at a precision of 75.7% (true positives over all predicted positives). Since 90% of our training data is from the Primary Mission, we also test our ability to generalize on held-out 1st Extended Mission data. Here, we find an area under the precision-recall curve of 0.965, a 4% improvement over Astronet-Triage (Yu et al. 2019). On the TESS Object of Interest (TOI) Catalog through April 2022, a shortlist of planets and planet candidates, Astronet-Triage-v2 is able to recover 3577 out of 4140 TOIs, while Astronet-Triage only recovers 3349 targets at an equal level of precision. In other words, upgrading to Astronet-Triage-v2 helps save at least 200 planet candidates from being lost. The new model is currently used for planet candidate triage in the Quick-Look Pipeline (Huang et al. 2020a,b; Kunimoto et al. 2021). INTRODUCTION ally requires extremely precise observations.
Detecting Severity of Diabetic Retinopathy from Fundus Images using Ensembled Transformers
Adak, Chandranath, Karkera, Tejas, Chattopadhyay, Soumi, Saqib, Muhammad
Diabetic Retinopathy (DR) is considered one of the primary concerns due to its effect on vision loss among most people with diabetes globally. The severity of DR is mostly comprehended manually by ophthalmologists from fundus photography-based retina images. This paper deals with an automated understanding of the severity stages of DR. In the literature, researchers have focused on this automation using traditional machine learning-based algorithms and convolutional architectures. However, the past works hardly focused on essential parts of the retinal image to improve the model performance. In this paper, we adopt transformer-based learning models to capture the crucial features of retinal images to understand DR severity better. We work with ensembling image transformers, where we adopt four models, namely ViT (Vision Transformer), BEiT (Bidirectional Encoder representation for image Transformer), CaiT (Class-Attention in Image Transformers), and DeiT (Data efficient image Transformers), to infer the degree of DR severity from fundus photographs. For experiments, we used the publicly available APTOS-2019 blindness detection dataset, where the performances of the transformer-based models were quite encouraging.